Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00925 and EX31_RS00930 are separated by 77 nucleotides EX31_RS00930 and EX31_RS00935 are separated by 351 nucleotides
EX31_RS00925: EX31_RS00925 - glycosyltransferase family 9 protein, at 200,665 to 201,747
_RS00925
EX31_RS00930: EX31_RS00930 - glycosyltransferase family 9 protein, at 201,825 to 202,844
_RS00930
EX31_RS00935: EX31_RS00935 - LysR family transcriptional regulator, at 203,196 to 204,167
_RS00935
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 200.847 kb on + strand, within EX31_RS00925 at 200.848 kb on - strand, within EX31_RS00925 at 200.851 kb on + strand, within EX31_RS00925 at 200.872 kb on - strand, within EX31_RS00925 at 200.876 kb on - strand, within EX31_RS00925 at 200.876 kb on - strand, within EX31_RS00925 at 200.966 kb on - strand, within EX31_RS00925 at 200.967 kb on + strand, within EX31_RS00925 at 200.968 kb on - strand, within EX31_RS00925 at 200.968 kb on - strand, within EX31_RS00925 at 200.968 kb on - strand, within EX31_RS00925 at 200.968 kb on - strand, within EX31_RS00925 at 201.071 kb on - strand, within EX31_RS00925 at 201.079 kb on - strand, within EX31_RS00925 at 201.265 kb on - strand, within EX31_RS00925 at 201.296 kb on - strand, within EX31_RS00925 at 201.481 kb on - strand, within EX31_RS00925 at 201.503 kb on + strand, within EX31_RS00925 at 201.629 kb on + strand, within EX31_RS00925 at 201.879 kb on - strand at 201.977 kb on + strand, within EX31_RS00930 at 202.047 kb on + strand, within EX31_RS00930 at 202.048 kb on - strand, within EX31_RS00930 at 202.113 kb on - strand, within EX31_RS00930 at 202.115 kb on + strand, within EX31_RS00930 at 202.115 kb on + strand, within EX31_RS00930 at 202.118 kb on + strand, within EX31_RS00930 at 202.141 kb on + strand, within EX31_RS00930 at 202.142 kb on - strand, within EX31_RS00930 at 202.171 kb on + strand, within EX31_RS00930 at 202.172 kb on - strand, within EX31_RS00930 at 202.179 kb on - strand, within EX31_RS00930 at 202.309 kb on + strand, within EX31_RS00930 at 202.311 kb on + strand, within EX31_RS00930 at 202.312 kb on - strand, within EX31_RS00930 at 202.378 kb on - strand, within EX31_RS00930 at 202.446 kb on - strand, within EX31_RS00930 at 202.466 kb on - strand, within EX31_RS00930 at 202.471 kb on - strand, within EX31_RS00930 at 202.682 kb on + strand, within EX31_RS00930 at 202.906 kb on - strand at 202.980 kb on + strand at 203.085 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.174 kb on + strand at 203.175 kb on - strand at 203.180 kb on + strand at 203.230 kb on + strand at 203.283 kb on - strand at 203.585 kb on + strand, within EX31_RS00935 at 203.585 kb on + strand, within EX31_RS00935 at 203.784 kb on + strand, within EX31_RS00935 at 203.798 kb on + strand, within EX31_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 200,847 + EX31_RS00925 0.17 -1.6 200,848 - EX31_RS00925 0.17 +0.1 200,851 + EX31_RS00925 0.17 -1.1 200,872 - EX31_RS00925 0.19 -0.9 200,876 - EX31_RS00925 0.19 +0.6 200,876 - EX31_RS00925 0.19 -1.4 200,966 - EX31_RS00925 0.28 -0.3 200,967 + EX31_RS00925 0.28 -1.5 200,968 - EX31_RS00925 0.28 -0.2 200,968 - EX31_RS00925 0.28 -0.0 200,968 - EX31_RS00925 0.28 +0.6 200,968 - EX31_RS00925 0.28 +0.7 201,071 - EX31_RS00925 0.37 +1.7 201,079 - EX31_RS00925 0.38 -0.1 201,265 - EX31_RS00925 0.55 +0.7 201,296 - EX31_RS00925 0.58 -0.5 201,481 - EX31_RS00925 0.75 -0.8 201,503 + EX31_RS00925 0.77 -2.1 201,629 + EX31_RS00925 0.89 -0.2 201,879 - -1.4 201,977 + EX31_RS00930 0.15 -0.7 202,047 + EX31_RS00930 0.22 -2.7 202,048 - EX31_RS00930 0.22 -1.2 202,113 - EX31_RS00930 0.28 -0.3 202,115 + EX31_RS00930 0.28 +0.3 202,115 + EX31_RS00930 0.28 -1.4 202,118 + EX31_RS00930 0.29 -0.3 202,141 + EX31_RS00930 0.31 -0.1 202,142 - EX31_RS00930 0.31 -0.3 202,171 + EX31_RS00930 0.34 -0.9 202,172 - EX31_RS00930 0.34 -0.6 202,179 - EX31_RS00930 0.35 +0.2 202,309 + EX31_RS00930 0.47 +0.3 202,311 + EX31_RS00930 0.48 -0.4 202,312 - EX31_RS00930 0.48 -0.4 202,378 - EX31_RS00930 0.54 -2.3 202,446 - EX31_RS00930 0.61 -1.1 202,466 - EX31_RS00930 0.63 +0.0 202,471 - EX31_RS00930 0.63 -0.9 202,682 + EX31_RS00930 0.84 -0.6 202,906 - +1.4 202,980 + -2.0 203,085 + +0.9 203,174 + +0.8 203,174 + -0.5 203,174 + -0.7 203,174 + -0.4 203,174 + -0.7 203,175 - +0.1 203,180 + -1.4 203,230 + -0.7 203,283 - +0.8 203,585 + EX31_RS00935 0.40 -2.8 203,585 + EX31_RS00935 0.40 -0.1 203,784 + EX31_RS00935 0.60 -0.1 203,798 + EX31_RS00935 0.62 +0.8
Or see this region's nucleotide sequence