Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00330 and EX31_RS00335 are separated by 97 nucleotides EX31_RS00335 and EX31_RS00340 are separated by 39 nucleotides EX31_RS00340 and EX31_RS00345 are separated by 134 nucleotides
EX31_RS00330: EX31_RS00330 - drug:proton antiporter, at 69,634 to 70,005
_RS00330
EX31_RS00335: EX31_RS00335 - YafY family transcriptional regulator, at 70,103 to 70,792
_RS00335
EX31_RS00340: EX31_RS00340 - MFS transporter, at 70,832 to 72,253
_RS00340
EX31_RS00345: EX31_RS00345 - LysR family transcriptional regulator, at 72,388 to 73,293
_RS00345
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.847 kb on - strand, within EX31_RS00330 at 69.847 kb on - strand, within EX31_RS00330 at 69.945 kb on - strand, within EX31_RS00330 at 69.977 kb on + strand at 69.985 kb on - strand at 69.985 kb on - strand at 69.985 kb on - strand at 70.051 kb on - strand at 70.057 kb on + strand at 70.062 kb on + strand at 70.063 kb on - strand at 70.063 kb on - strand at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.196 kb on - strand, within EX31_RS00335 at 70.253 kb on + strand, within EX31_RS00335 at 70.272 kb on + strand, within EX31_RS00335 at 70.273 kb on - strand, within EX31_RS00335 at 70.345 kb on + strand, within EX31_RS00335 at 70.358 kb on - strand, within EX31_RS00335 at 70.424 kb on + strand, within EX31_RS00335 at 70.424 kb on + strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.425 kb on - strand, within EX31_RS00335 at 70.523 kb on - strand, within EX31_RS00335 at 70.523 kb on - strand, within EX31_RS00335 at 70.615 kb on + strand, within EX31_RS00335 at 70.615 kb on + strand, within EX31_RS00335 at 70.616 kb on - strand, within EX31_RS00335 at 70.616 kb on - strand, within EX31_RS00335 at 70.764 kb on - strand at 70.764 kb on - strand at 70.764 kb on - strand at 70.799 kb on - strand at 70.799 kb on - strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.806 kb on + strand at 70.807 kb on - strand at 70.807 kb on - strand at 70.811 kb on - strand at 70.817 kb on + strand at 70.822 kb on - strand at 70.824 kb on + strand at 70.824 kb on + strand at 70.825 kb on - strand at 70.825 kb on - strand at 70.825 kb on - strand at 70.884 kb on - strand at 70.953 kb on - strand at 70.971 kb on + strand at 70.971 kb on + strand at 70.971 kb on + strand at 70.972 kb on - strand at 70.972 kb on - strand at 70.972 kb on - strand at 71.030 kb on - strand, within EX31_RS00340 at 71.190 kb on - strand, within EX31_RS00340 at 71.211 kb on - strand, within EX31_RS00340 at 71.287 kb on + strand, within EX31_RS00340 at 71.287 kb on + strand, within EX31_RS00340 at 71.288 kb on - strand, within EX31_RS00340 at 71.316 kb on - strand, within EX31_RS00340 at 71.529 kb on + strand, within EX31_RS00340 at 71.535 kb on - strand, within EX31_RS00340 at 71.651 kb on - strand, within EX31_RS00340 at 71.683 kb on + strand, within EX31_RS00340 at 71.683 kb on + strand, within EX31_RS00340 at 71.684 kb on - strand, within EX31_RS00340 at 71.753 kb on + strand, within EX31_RS00340 at 71.754 kb on - strand, within EX31_RS00340 at 71.754 kb on - strand, within EX31_RS00340 at 71.754 kb on - strand, within EX31_RS00340 at 71.820 kb on - strand, within EX31_RS00340 at 71.918 kb on - strand, within EX31_RS00340 at 71.918 kb on - strand, within EX31_RS00340 at 71.921 kb on + strand, within EX31_RS00340 at 71.922 kb on - strand, within EX31_RS00340 at 71.922 kb on - strand, within EX31_RS00340 at 71.922 kb on - strand, within EX31_RS00340 at 72.245 kb on + strand at 72.246 kb on - strand at 72.253 kb on + strand at 72.253 kb on + strand at 72.285 kb on + strand at 72.286 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.290 kb on - strand at 72.301 kb on + strand at 72.302 kb on - strand at 72.302 kb on - strand at 72.304 kb on + strand at 72.304 kb on + strand at 72.304 kb on + strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.305 kb on - strand at 72.333 kb on + strand at 72.334 kb on - strand at 72.337 kb on - strand at 72.377 kb on - strand at 72.410 kb on + strand at 72.410 kb on + strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.411 kb on - strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.414 kb on + strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.415 kb on - strand at 72.449 kb on + strand at 72.449 kb on + strand at 72.477 kb on - strand at 72.558 kb on + strand, within EX31_RS00345 at 72.559 kb on - strand, within EX31_RS00345 at 72.559 kb on - strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.761 kb on + strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.762 kb on - strand, within EX31_RS00345 at 72.895 kb on - strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.955 kb on + strand, within EX31_RS00345 at 72.956 kb on - strand, within EX31_RS00345 at 73.000 kb on + strand, within EX31_RS00345 at 73.154 kb on + strand, within EX31_RS00345 at 73.154 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.156 kb on + strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345 at 73.157 kb on - strand, within EX31_RS00345
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 69,847 - EX31_RS00330 0.57 -0.9 69,847 - EX31_RS00330 0.57 +1.4 69,945 - EX31_RS00330 0.84 -0.1 69,977 + -0.2 69,985 - +0.9 69,985 - +1.1 69,985 - -0.3 70,051 - +1.1 70,057 + +0.4 70,062 + -1.1 70,063 - -0.5 70,063 - -0.1 70,196 - EX31_RS00335 0.13 -0.1 70,196 - EX31_RS00335 0.13 -0.2 70,196 - EX31_RS00335 0.13 -0.5 70,196 - EX31_RS00335 0.13 -0.8 70,196 - EX31_RS00335 0.13 +0.3 70,196 - EX31_RS00335 0.13 +0.3 70,196 - EX31_RS00335 0.13 -0.3 70,196 - EX31_RS00335 0.13 +1.1 70,196 - EX31_RS00335 0.13 -0.1 70,196 - EX31_RS00335 0.13 -0.0 70,196 - EX31_RS00335 0.13 +0.4 70,196 - EX31_RS00335 0.13 -0.0 70,196 - EX31_RS00335 0.13 +0.2 70,196 - EX31_RS00335 0.13 +1.9 70,196 - EX31_RS00335 0.13 +0.3 70,253 + EX31_RS00335 0.22 -0.2 70,272 + EX31_RS00335 0.24 +1.1 70,273 - EX31_RS00335 0.25 +0.2 70,345 + EX31_RS00335 0.35 -0.9 70,358 - EX31_RS00335 0.37 -0.7 70,424 + EX31_RS00335 0.47 +0.7 70,424 + EX31_RS00335 0.47 -1.1 70,425 - EX31_RS00335 0.47 +0.4 70,425 - EX31_RS00335 0.47 -0.9 70,425 - EX31_RS00335 0.47 -1.1 70,523 - EX31_RS00335 0.61 -1.2 70,523 - EX31_RS00335 0.61 -0.8 70,615 + EX31_RS00335 0.74 -0.5 70,615 + EX31_RS00335 0.74 -0.5 70,616 - EX31_RS00335 0.74 +0.1 70,616 - EX31_RS00335 0.74 +0.0 70,764 - -0.4 70,764 - -1.8 70,764 - +1.7 70,799 - -0.2 70,799 - -0.5 70,806 + -1.0 70,806 + -0.8 70,806 + +0.4 70,806 + -0.9 70,807 - -1.6 70,807 - -0.0 70,811 - +0.3 70,817 + -0.3 70,822 - +0.5 70,824 + +0.5 70,824 + -0.2 70,825 - +1.5 70,825 - +0.4 70,825 - -0.3 70,884 - +1.3 70,953 - +0.3 70,971 + +0.3 70,971 + -0.2 70,971 + +0.7 70,972 - -0.1 70,972 - +0.8 70,972 - +0.6 71,030 - EX31_RS00340 0.14 -0.8 71,190 - EX31_RS00340 0.25 +1.2 71,211 - EX31_RS00340 0.27 +0.8 71,287 + EX31_RS00340 0.32 +0.3 71,287 + EX31_RS00340 0.32 +0.8 71,288 - EX31_RS00340 0.32 +1.4 71,316 - EX31_RS00340 0.34 +0.7 71,529 + EX31_RS00340 0.49 +0.3 71,535 - EX31_RS00340 0.49 -0.5 71,651 - EX31_RS00340 0.58 +1.0 71,683 + EX31_RS00340 0.60 -1.4 71,683 + EX31_RS00340 0.60 +1.3 71,684 - EX31_RS00340 0.60 +0.7 71,753 + EX31_RS00340 0.65 +0.4 71,754 - EX31_RS00340 0.65 -0.5 71,754 - EX31_RS00340 0.65 +0.5 71,754 - EX31_RS00340 0.65 +0.3 71,820 - EX31_RS00340 0.69 +0.8 71,918 - EX31_RS00340 0.76 +0.8 71,918 - EX31_RS00340 0.76 -0.3 71,921 + EX31_RS00340 0.77 +0.2 71,922 - EX31_RS00340 0.77 +0.3 71,922 - EX31_RS00340 0.77 -0.6 71,922 - EX31_RS00340 0.77 -0.4 72,245 + +1.2 72,246 - +0.0 72,253 + -0.1 72,253 + +0.6 72,285 + -0.3 72,286 - -0.7 72,290 - +0.3 72,290 - -1.1 72,290 - -0.1 72,290 - -1.0 72,290 - +0.3 72,290 - -0.7 72,290 - -1.3 72,301 + -0.2 72,302 - -0.8 72,302 - +1.7 72,304 + -0.4 72,304 + -0.1 72,304 + -0.4 72,305 - -0.7 72,305 - -1.5 72,305 - -0.3 72,305 - +2.7 72,333 + +0.3 72,334 - +1.5 72,337 - +0.3 72,377 - +0.4 72,410 + -0.5 72,410 + +0.2 72,411 - -0.0 72,411 - +0.1 72,411 - +0.4 72,411 - +0.1 72,411 - -1.7 72,414 + +0.2 72,414 + +0.9 72,414 + +0.5 72,414 + +0.3 72,415 - -0.8 72,415 - +0.5 72,415 - +0.7 72,415 - -0.9 72,415 - -0.7 72,449 + +0.3 72,449 + +0.2 72,477 - +0.1 72,558 + EX31_RS00345 0.19 +0.0 72,559 - EX31_RS00345 0.19 -0.8 72,559 - EX31_RS00345 0.19 +0.6 72,761 + EX31_RS00345 0.41 -0.0 72,761 + EX31_RS00345 0.41 -1.1 72,761 + EX31_RS00345 0.41 -0.1 72,762 - EX31_RS00345 0.41 -0.7 72,762 - EX31_RS00345 0.41 -0.9 72,762 - EX31_RS00345 0.41 -1.5 72,762 - EX31_RS00345 0.41 +0.5 72,895 - EX31_RS00345 0.56 +0.6 72,955 + EX31_RS00345 0.63 -0.8 72,955 + EX31_RS00345 0.63 -1.1 72,955 + EX31_RS00345 0.63 +0.3 72,956 - EX31_RS00345 0.63 -0.9 73,000 + EX31_RS00345 0.68 -0.7 73,154 + EX31_RS00345 0.85 +0.2 73,154 + EX31_RS00345 0.85 -0.3 73,156 + EX31_RS00345 0.85 +0.1 73,156 + EX31_RS00345 0.85 -0.7 73,156 + EX31_RS00345 0.85 -0.4 73,156 + EX31_RS00345 0.85 -0.2 73,156 + EX31_RS00345 0.85 -0.2 73,156 + EX31_RS00345 0.85 -2.2 73,157 - EX31_RS00345 0.85 -0.5 73,157 - EX31_RS00345 0.85 +0.0 73,157 - EX31_RS00345 0.85 -0.1 73,157 - EX31_RS00345 0.85 -2.0 73,157 - EX31_RS00345 0.85 -1.3
Or see this region's nucleotide sequence