Strain Fitness in Rahnella sp. WP5 around EX31_RS23985

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23975 and EX31_RS23980 are separated by 2 nucleotidesEX31_RS23980 and EX31_RS23985 overlap by 4 nucleotidesEX31_RS23985 and EX31_RS23990 are separated by 1 nucleotidesEX31_RS23990 and EX31_RS23995 overlap by 1 nucleotides EX31_RS23975: EX31_RS23975 - class I SAM-dependent methyltransferase, at 563,045 to 564,277 _RS23975 EX31_RS23980: EX31_RS23980 - DUF1365 domain-containing protein, at 564,280 to 564,996 _RS23980 EX31_RS23985: EX31_RS23985 - FAD-dependent oxidoreductase, at 564,993 to 566,351 _RS23985 EX31_RS23990: EX31_RS23990 - SDR family NAD(P)-dependent oxidoreductase, at 566,353 to 567,069 _RS23990 EX31_RS23995: EX31_RS23995 - nuclear transport factor 2 family protein, at 567,069 to 567,521 _RS23995 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2at 564.004 kb on + strand, within EX31_RS23975at 564.028 kb on + strand, within EX31_RS23975at 564.029 kb on - strand, within EX31_RS23975at 564.199 kb on + strandat 564.288 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.350 kb on + strandat 564.350 kb on + strandat 564.351 kb on - strandat 564.354 kb on + strand, within EX31_RS23980at 564.354 kb on + strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.370 kb on - strand, within EX31_RS23980at 564.469 kb on - strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.527 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.630 kb on + strand, within EX31_RS23980at 564.720 kb on - strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.867 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.881 kb on - strand, within EX31_RS23980at 564.922 kb on - strand, within EX31_RS23980at 564.926 kb on + strandat 564.952 kb on - strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 565.108 kb on + strandat 565.108 kb on + strandat 565.205 kb on + strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.283 kb on + strand, within EX31_RS23985at 565.302 kb on - strand, within EX31_RS23985at 565.302 kb on - strand, within EX31_RS23985at 565.310 kb on + strand, within EX31_RS23985at 565.310 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.312 kb on + strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.313 kb on - strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.356 kb on + strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.357 kb on - strand, within EX31_RS23985at 565.399 kb on + strand, within EX31_RS23985at 565.400 kb on - strand, within EX31_RS23985at 565.565 kb on + strand, within EX31_RS23985at 565.608 kb on + strand, within EX31_RS23985at 565.698 kb on - strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.699 kb on + strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.700 kb on - strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.855 kb on + strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.856 kb on - strand, within EX31_RS23985at 565.910 kb on + strand, within EX31_RS23985at 565.911 kb on - strand, within EX31_RS23985at 566.051 kb on - strand, within EX31_RS23985at 566.051 kb on - strand, within EX31_RS23985at 566.060 kb on + strand, within EX31_RS23985at 566.060 kb on + strand, within EX31_RS23985at 566.060 kb on + strand, within EX31_RS23985at 566.061 kb on - strand, within EX31_RS23985at 566.061 kb on - strand, within EX31_RS23985at 566.147 kb on - strand, within EX31_RS23985at 566.159 kb on + strand, within EX31_RS23985at 566.159 kb on + strand, within EX31_RS23985at 566.159 kb on + strand, within EX31_RS23985at 566.161 kb on + strand, within EX31_RS23985at 566.161 kb on + strand, within EX31_RS23985at 566.161 kb on + strand, within EX31_RS23985at 566.162 kb on - strand, within EX31_RS23985at 566.162 kb on - strand, within EX31_RS23985at 566.225 kb on + strandat 566.225 kb on + strandat 566.225 kb on + strandat 566.225 kb on + strandat 566.225 kb on + strandat 566.328 kb on + strandat 566.375 kb on - strandat 566.725 kb on + strand, within EX31_RS23990at 566.896 kb on + strand, within EX31_RS23990at 567.128 kb on - strand, within EX31_RS23995at 567.128 kb on - strand, within EX31_RS23995at 567.128 kb on - strand, within EX31_RS23995at 567.149 kb on - strand, within EX31_RS23995at 567.163 kb on + strand, within EX31_RS23995at 567.163 kb on + strand, within EX31_RS23995at 567.163 kb on + strand, within EX31_RS23995at 567.164 kb on - strand, within EX31_RS23995at 567.164 kb on - strand, within EX31_RS23995at 567.164 kb on - strand, within EX31_RS23995at 567.167 kb on + strand, within EX31_RS23995at 567.167 kb on + strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.168 kb on - strand, within EX31_RS23995at 567.170 kb on + strand, within EX31_RS23995at 567.170 kb on + strand, within EX31_RS23995at 567.288 kb on - strand, within EX31_RS23995at 567.288 kb on - strand, within EX31_RS23995at 567.317 kb on - strand, within EX31_RS23995at 567.347 kb on - strand, within EX31_RS23995

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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564,004 + EX31_RS23975 0.78 -0.2
564,028 + EX31_RS23975 0.80 +0.2
564,029 - EX31_RS23975 0.80 +0.1
564,199 + -0.7
564,288 + -0.3
564,308 + -0.8
564,308 + +0.4
564,308 + -0.4
564,308 + -0.1
564,350 + +0.2
564,350 + -0.6
564,351 - +0.0
564,354 + EX31_RS23980 0.10 -0.3
564,354 + EX31_RS23980 0.10 +0.7
564,355 - EX31_RS23980 0.10 -0.3
564,355 - EX31_RS23980 0.10 -0.2
564,355 - EX31_RS23980 0.10 -0.1
564,370 - EX31_RS23980 0.13 +0.2
564,469 - EX31_RS23980 0.26 -0.5
564,493 + EX31_RS23980 0.30 -0.4
564,493 + EX31_RS23980 0.30 -0.6
564,493 + EX31_RS23980 0.30 +0.6
564,493 + EX31_RS23980 0.30 -0.5
564,527 + EX31_RS23980 0.34 -0.6
564,605 + EX31_RS23980 0.45 -1.4
564,605 + EX31_RS23980 0.45 -2.1
564,605 + EX31_RS23980 0.45 -0.5
564,606 - EX31_RS23980 0.45 -0.7
564,606 - EX31_RS23980 0.45 +0.7
564,606 - EX31_RS23980 0.45 +0.1
564,606 - EX31_RS23980 0.45 -1.4
564,630 + EX31_RS23980 0.49 +0.5
564,720 - EX31_RS23980 0.61 -0.0
564,733 + EX31_RS23980 0.63 -0.7
564,733 + EX31_RS23980 0.63 -0.4
564,867 + EX31_RS23980 0.82 +0.4
564,880 + EX31_RS23980 0.84 -1.1
564,880 + EX31_RS23980 0.84 +0.9
564,881 - EX31_RS23980 0.84 +0.7
564,922 - EX31_RS23980 0.90 -0.8
564,926 + +0.4
564,952 - -0.4
564,980 + -0.9
564,980 + -1.3
564,980 + +1.0
564,981 - -0.5
564,981 - +0.6
564,981 - -0.7
564,981 - -0.5
564,981 - -0.2
564,981 - +0.4
565,108 + +0.5
565,108 + -0.4
565,205 + EX31_RS23985 0.16 +0.2
565,206 - EX31_RS23985 0.16 -0.1
565,206 - EX31_RS23985 0.16 -0.3
565,206 - EX31_RS23985 0.16 -0.3
565,206 - EX31_RS23985 0.16 +0.1
565,206 - EX31_RS23985 0.16 +0.4
565,206 - EX31_RS23985 0.16 -0.4
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 +0.3
565,207 + EX31_RS23985 0.16 -1.0
565,207 + EX31_RS23985 0.16 -0.6
565,207 + EX31_RS23985 0.16 +0.5
565,207 + EX31_RS23985 0.16 -0.4
565,207 + EX31_RS23985 0.16 +0.8
565,207 + EX31_RS23985 0.16 +1.1
565,207 + EX31_RS23985 0.16 -0.1
565,207 + EX31_RS23985 0.16 -1.3
565,207 + EX31_RS23985 0.16 +0.1
565,207 + EX31_RS23985 0.16 +0.6
565,207 + EX31_RS23985 0.16 +0.2
565,207 + EX31_RS23985 0.16 +0.6
565,207 + EX31_RS23985 0.16 +1.0
565,207 + EX31_RS23985 0.16 -0.6
565,207 + EX31_RS23985 0.16 -0.4
565,207 + EX31_RS23985 0.16 +0.0
565,207 + EX31_RS23985 0.16 -0.6
565,208 - EX31_RS23985 0.16 +0.8
565,208 - EX31_RS23985 0.16 +0.8
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 +0.9
565,208 - EX31_RS23985 0.16 -1.7
565,208 - EX31_RS23985 0.16 +0.8
565,208 - EX31_RS23985 0.16 -0.3
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 +0.3
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 -0.3
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 +0.0
565,208 - EX31_RS23985 0.16 -0.3
565,208 - EX31_RS23985 0.16 +0.1
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 +0.3
565,208 - EX31_RS23985 0.16 +2.7
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 -1.3
565,208 - EX31_RS23985 0.16 +0.1
565,208 - EX31_RS23985 0.16 -0.3
565,208 - EX31_RS23985 0.16 -0.1
565,208 - EX31_RS23985 0.16 -0.0
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -0.0
565,283 + EX31_RS23985 0.21 +0.4
565,302 - EX31_RS23985 0.23 +0.1
565,302 - EX31_RS23985 0.23 -1.4
565,310 + EX31_RS23985 0.23 +1.5
565,310 + EX31_RS23985 0.23 -0.6
565,312 + EX31_RS23985 0.23 -0.2
565,312 + EX31_RS23985 0.23 -0.8
565,312 + EX31_RS23985 0.23 -0.6
565,312 + EX31_RS23985 0.23 +0.0
565,312 + EX31_RS23985 0.23 -0.4
565,312 + EX31_RS23985 0.23 +0.2
565,312 + EX31_RS23985 0.23 -1.2
565,312 + EX31_RS23985 0.23 -0.0
565,312 + EX31_RS23985 0.23 -0.9
565,313 - EX31_RS23985 0.24 -0.4
565,313 - EX31_RS23985 0.24 -0.5
565,313 - EX31_RS23985 0.24 -0.3
565,313 - EX31_RS23985 0.24 +0.4
565,313 - EX31_RS23985 0.24 +0.8
565,313 - EX31_RS23985 0.24 +0.3
565,356 + EX31_RS23985 0.27 -0.4
565,356 + EX31_RS23985 0.27 -1.0
565,356 + EX31_RS23985 0.27 -0.1
565,356 + EX31_RS23985 0.27 -0.6
565,356 + EX31_RS23985 0.27 +0.2
565,357 - EX31_RS23985 0.27 -0.3
565,357 - EX31_RS23985 0.27 +0.5
565,357 - EX31_RS23985 0.27 +0.5
565,399 + EX31_RS23985 0.30 +0.2
565,400 - EX31_RS23985 0.30 -0.6
565,565 + EX31_RS23985 0.42 +1.1
565,608 + EX31_RS23985 0.45 +0.7
565,698 - EX31_RS23985 0.52 +0.5
565,699 + EX31_RS23985 0.52 +0.1
565,699 + EX31_RS23985 0.52 -2.2
565,699 + EX31_RS23985 0.52 -0.0
565,699 + EX31_RS23985 0.52 +0.6
565,700 - EX31_RS23985 0.52 +1.0
565,700 - EX31_RS23985 0.52 -1.1
565,700 - EX31_RS23985 0.52 -0.2
565,855 + EX31_RS23985 0.63 +0.6
565,855 + EX31_RS23985 0.63 -0.6
565,855 + EX31_RS23985 0.63 +0.9
565,855 + EX31_RS23985 0.63 -0.0
565,855 + EX31_RS23985 0.63 -0.2
565,855 + EX31_RS23985 0.63 +1.2
565,855 + EX31_RS23985 0.63 +0.3
565,856 - EX31_RS23985 0.64 -1.0
565,856 - EX31_RS23985 0.64 -0.8
565,856 - EX31_RS23985 0.64 +0.6
565,856 - EX31_RS23985 0.64 +0.1
565,856 - EX31_RS23985 0.64 -0.6
565,856 - EX31_RS23985 0.64 -0.1
565,910 + EX31_RS23985 0.67 -2.0
565,911 - EX31_RS23985 0.68 +0.4
566,051 - EX31_RS23985 0.78 -0.1
566,051 - EX31_RS23985 0.78 -0.3
566,060 + EX31_RS23985 0.79 -0.9
566,060 + EX31_RS23985 0.79 -0.4
566,060 + EX31_RS23985 0.79 -0.1
566,061 - EX31_RS23985 0.79 -2.3
566,061 - EX31_RS23985 0.79 -1.1
566,147 - EX31_RS23985 0.85 +0.0
566,159 + EX31_RS23985 0.86 +0.5
566,159 + EX31_RS23985 0.86 -0.9
566,159 + EX31_RS23985 0.86 -1.0
566,161 + EX31_RS23985 0.86 +0.4
566,161 + EX31_RS23985 0.86 +0.1
566,161 + EX31_RS23985 0.86 -1.2
566,162 - EX31_RS23985 0.86 +0.6
566,162 - EX31_RS23985 0.86 +0.7
566,225 + -0.5
566,225 + +0.9
566,225 + +0.8
566,225 + -1.4
566,225 + -0.3
566,328 + -2.2
566,375 - -0.5
566,725 + EX31_RS23990 0.52 +0.3
566,896 + EX31_RS23990 0.76 -1.7
567,128 - EX31_RS23995 0.13 +0.5
567,128 - EX31_RS23995 0.13 -0.7
567,128 - EX31_RS23995 0.13 -0.4
567,149 - EX31_RS23995 0.18 -0.2
567,163 + EX31_RS23995 0.21 -0.2
567,163 + EX31_RS23995 0.21 -0.5
567,163 + EX31_RS23995 0.21 -1.3
567,164 - EX31_RS23995 0.21 -0.6
567,164 - EX31_RS23995 0.21 +0.6
567,164 - EX31_RS23995 0.21 +0.6
567,167 + EX31_RS23995 0.22 -0.8
567,167 + EX31_RS23995 0.22 -0.5
567,168 - EX31_RS23995 0.22 -1.2
567,168 - EX31_RS23995 0.22 +0.2
567,168 - EX31_RS23995 0.22 -0.2
567,168 - EX31_RS23995 0.22 +0.5
567,168 - EX31_RS23995 0.22 -0.1
567,168 - EX31_RS23995 0.22 -0.0
567,170 + EX31_RS23995 0.22 -0.5
567,170 + EX31_RS23995 0.22 +0.1
567,288 - EX31_RS23995 0.48 +0.4
567,288 - EX31_RS23995 0.48 +0.9
567,317 - EX31_RS23995 0.55 +0.5
567,347 - EX31_RS23995 0.61 -0.9

Or see this region's nucleotide sequence