Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20990 and EX31_RS20995 are separated by 186 nucleotides EX31_RS20995 and EX31_RS21000 are separated by 293 nucleotides
EX31_RS20990: EX31_RS20990 - esterase FrsA, at 840,916 to 842,166
_RS20990
EX31_RS20995: EX31_RS20995 - xanthine phosphoribosyltransferase, at 842,353 to 842,811
_RS20995
EX31_RS21000: EX31_RS21000 - beta-Ala-His dipeptidase, at 843,105 to 844,565
_RS21000
Position (kb) 842
843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.511 kb on + strand, within EX31_RS20990 at 841.511 kb on + strand, within EX31_RS20990 at 841.511 kb on + strand, within EX31_RS20990 at 841.511 kb on + strand, within EX31_RS20990 at 841.511 kb on + strand, within EX31_RS20990 at 841.512 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.544 kb on - strand, within EX31_RS20990 at 841.548 kb on + strand, within EX31_RS20990 at 841.644 kb on + strand, within EX31_RS20990 at 841.644 kb on + strand, within EX31_RS20990 at 841.645 kb on - strand, within EX31_RS20990 at 841.667 kb on + strand, within EX31_RS20990 at 841.667 kb on + strand, within EX31_RS20990 at 841.702 kb on - strand, within EX31_RS20990 at 841.735 kb on - strand, within EX31_RS20990 at 841.769 kb on + strand, within EX31_RS20990 at 841.844 kb on + strand, within EX31_RS20990 at 841.844 kb on + strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.845 kb on - strand, within EX31_RS20990 at 841.868 kb on + strand, within EX31_RS20990 at 841.868 kb on + strand, within EX31_RS20990 at 842.010 kb on + strand, within EX31_RS20990 at 842.073 kb on + strand at 842.073 kb on + strand at 842.073 kb on + strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.076 kb on + strand at 842.076 kb on + strand at 842.076 kb on + strand at 842.076 kb on + strand at 842.076 kb on + strand at 842.077 kb on - strand at 842.077 kb on - strand at 842.077 kb on - strand at 842.077 kb on - strand at 842.185 kb on - strand at 842.229 kb on + strand at 842.229 kb on + strand at 842.229 kb on + strand at 842.232 kb on - strand at 842.291 kb on + strand at 842.291 kb on + strand at 842.325 kb on - strand at 842.325 kb on - strand at 842.337 kb on + strand at 842.337 kb on + strand at 842.337 kb on + strand at 842.338 kb on - strand at 842.340 kb on + strand at 842.341 kb on - strand at 842.354 kb on + strand at 842.355 kb on - strand at 842.363 kb on - strand at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.438 kb on + strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.439 kb on - strand, within EX31_RS20995 at 842.478 kb on + strand, within EX31_RS20995 at 842.479 kb on - strand, within EX31_RS20995 at 842.501 kb on + strand, within EX31_RS20995 at 842.625 kb on - strand, within EX31_RS20995 at 842.625 kb on - strand, within EX31_RS20995 at 842.625 kb on - strand, within EX31_RS20995 at 842.634 kb on + strand, within EX31_RS20995 at 842.634 kb on + strand, within EX31_RS20995 at 842.634 kb on + strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.635 kb on - strand, within EX31_RS20995 at 842.638 kb on + strand, within EX31_RS20995 at 842.638 kb on + strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.639 kb on - strand, within EX31_RS20995 at 842.644 kb on - strand, within EX31_RS20995 at 842.644 kb on - strand, within EX31_RS20995 at 842.715 kb on + strand, within EX31_RS20995 at 842.715 kb on + strand, within EX31_RS20995 at 842.716 kb on - strand, within EX31_RS20995 at 842.716 kb on - strand, within EX31_RS20995 at 842.757 kb on + strand, within EX31_RS20995 at 842.758 kb on - strand, within EX31_RS20995 at 842.758 kb on - strand, within EX31_RS20995 at 842.758 kb on - strand, within EX31_RS20995 at 842.758 kb on - strand, within EX31_RS20995 at 842.791 kb on + strand at 842.792 kb on - strand at 842.792 kb on - strand at 842.798 kb on + strand at 842.798 kb on + strand at 842.798 kb on + strand at 842.799 kb on - strand at 842.811 kb on + strand at 842.811 kb on + strand at 842.811 kb on + strand at 842.811 kb on + strand at 842.812 kb on - strand at 842.812 kb on - strand at 842.812 kb on - strand at 842.812 kb on - strand at 842.812 kb on - strand at 842.812 kb on - strand at 842.835 kb on - strand at 842.835 kb on - strand at 842.881 kb on + strand at 842.881 kb on + strand at 842.881 kb on + strand at 842.882 kb on - strand at 842.882 kb on - strand at 842.882 kb on - strand at 842.883 kb on + strand at 842.883 kb on + strand at 842.883 kb on + strand at 842.883 kb on + strand at 842.883 kb on + strand at 842.884 kb on - strand at 842.884 kb on - strand at 842.884 kb on - strand at 842.976 kb on + strand at 842.976 kb on + strand at 842.976 kb on + strand at 842.976 kb on + strand at 842.976 kb on + strand at 842.977 kb on - strand at 842.977 kb on - strand at 842.977 kb on - strand at 842.977 kb on - strand at 842.977 kb on - strand at 842.977 kb on - strand at 842.984 kb on - strand at 842.984 kb on - strand at 843.022 kb on + strand at 843.022 kb on + strand at 843.022 kb on + strand at 843.023 kb on - strand at 843.023 kb on - strand at 843.023 kb on - strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.027 kb on - strand at 843.033 kb on - strand at 843.039 kb on - strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.101 kb on + strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.102 kb on - strand at 843.103 kb on + strand at 843.103 kb on + strand at 843.103 kb on + strand at 843.103 kb on + strand at 843.103 kb on + strand at 843.103 kb on + strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.104 kb on - strand at 843.183 kb on + strand at 843.183 kb on + strand at 843.183 kb on + strand at 843.184 kb on - strand at 843.184 kb on - strand at 843.338 kb on + strand, within EX31_RS21000 at 843.363 kb on - strand, within EX31_RS21000 at 843.363 kb on - strand, within EX31_RS21000 at 843.363 kb on - strand, within EX31_RS21000 at 843.419 kb on - strand, within EX31_RS21000 at 843.499 kb on + strand, within EX31_RS21000 at 843.499 kb on + strand, within EX31_RS21000 at 843.499 kb on + strand, within EX31_RS21000 at 843.500 kb on - strand, within EX31_RS21000 at 843.583 kb on + strand, within EX31_RS21000 at 843.583 kb on + strand, within EX31_RS21000 at 843.583 kb on + strand, within EX31_RS21000 at 843.583 kb on + strand, within EX31_RS21000 at 843.633 kb on + strand, within EX31_RS21000 at 843.633 kb on + strand, within EX31_RS21000 at 843.633 kb on + strand, within EX31_RS21000 at 843.633 kb on + strand, within EX31_RS21000 at 843.634 kb on - strand, within EX31_RS21000 at 843.634 kb on - strand, within EX31_RS21000 at 843.769 kb on + strand, within EX31_RS21000 at 843.769 kb on + strand, within EX31_RS21000 at 843.769 kb on + strand, within EX31_RS21000 at 843.770 kb on - strand, within EX31_RS21000 at 843.770 kb on - strand, within EX31_RS21000 at 843.770 kb on - strand, within EX31_RS21000
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 841,511 + EX31_RS20990 0.48 +0.1 841,511 + EX31_RS20990 0.48 -0.4 841,511 + EX31_RS20990 0.48 -0.3 841,511 + EX31_RS20990 0.48 -0.6 841,511 + EX31_RS20990 0.48 +0.5 841,512 - EX31_RS20990 0.48 -0.6 841,544 - EX31_RS20990 0.50 -0.2 841,544 - EX31_RS20990 0.50 -0.2 841,544 - EX31_RS20990 0.50 +0.5 841,544 - EX31_RS20990 0.50 -0.1 841,544 - EX31_RS20990 0.50 -0.2 841,544 - EX31_RS20990 0.50 +0.6 841,544 - EX31_RS20990 0.50 +0.5 841,548 + EX31_RS20990 0.51 +1.0 841,644 + EX31_RS20990 0.58 -1.2 841,644 + EX31_RS20990 0.58 -0.6 841,645 - EX31_RS20990 0.58 -1.1 841,667 + EX31_RS20990 0.60 -0.8 841,667 + EX31_RS20990 0.60 -0.1 841,702 - EX31_RS20990 0.63 +0.2 841,735 - EX31_RS20990 0.65 -0.2 841,769 + EX31_RS20990 0.68 +0.8 841,844 + EX31_RS20990 0.74 -0.3 841,844 + EX31_RS20990 0.74 -1.0 841,845 - EX31_RS20990 0.74 -1.0 841,845 - EX31_RS20990 0.74 +0.1 841,845 - EX31_RS20990 0.74 +0.1 841,845 - EX31_RS20990 0.74 +0.8 841,845 - EX31_RS20990 0.74 +0.3 841,845 - EX31_RS20990 0.74 +0.7 841,868 + EX31_RS20990 0.76 +0.2 841,868 + EX31_RS20990 0.76 -0.5 842,010 + EX31_RS20990 0.87 +0.3 842,073 + +0.5 842,073 + +0.0 842,073 + -0.3 842,074 - +0.2 842,074 - +1.1 842,074 - -0.4 842,074 - +0.2 842,074 - +0.1 842,074 - +0.7 842,074 - -0.3 842,076 + -0.6 842,076 + -0.5 842,076 + -0.1 842,076 + -0.5 842,076 + +0.2 842,077 - +1.6 842,077 - +0.4 842,077 - +0.6 842,077 - -0.2 842,185 - +0.5 842,229 + -0.4 842,229 + +1.0 842,229 + -0.2 842,232 - -0.6 842,291 + +0.4 842,291 + +0.3 842,325 - +0.6 842,325 - +0.3 842,337 + -1.2 842,337 + -0.3 842,337 + +0.5 842,338 - +0.9 842,340 + -0.3 842,341 - +0.3 842,354 + +0.0 842,355 - +0.8 842,363 - -0.1 842,438 + EX31_RS20995 0.19 +1.2 842,438 + EX31_RS20995 0.19 +0.1 842,438 + EX31_RS20995 0.19 -0.4 842,438 + EX31_RS20995 0.19 +0.8 842,438 + EX31_RS20995 0.19 -0.5 842,438 + EX31_RS20995 0.19 -1.2 842,438 + EX31_RS20995 0.19 -2.6 842,438 + EX31_RS20995 0.19 +0.4 842,438 + EX31_RS20995 0.19 +1.4 842,439 - EX31_RS20995 0.19 +0.2 842,439 - EX31_RS20995 0.19 +0.7 842,439 - EX31_RS20995 0.19 +0.2 842,439 - EX31_RS20995 0.19 -0.6 842,439 - EX31_RS20995 0.19 -0.1 842,439 - EX31_RS20995 0.19 +1.2 842,439 - EX31_RS20995 0.19 -0.3 842,439 - EX31_RS20995 0.19 +0.6 842,439 - EX31_RS20995 0.19 +0.6 842,439 - EX31_RS20995 0.19 -0.1 842,439 - EX31_RS20995 0.19 +0.7 842,439 - EX31_RS20995 0.19 +0.5 842,439 - EX31_RS20995 0.19 -0.2 842,478 + EX31_RS20995 0.27 +1.1 842,479 - EX31_RS20995 0.27 +0.9 842,501 + EX31_RS20995 0.32 +0.5 842,625 - EX31_RS20995 0.59 +0.0 842,625 - EX31_RS20995 0.59 +1.0 842,625 - EX31_RS20995 0.59 -0.6 842,634 + EX31_RS20995 0.61 +1.2 842,634 + EX31_RS20995 0.61 -0.5 842,634 + EX31_RS20995 0.61 -0.5 842,635 - EX31_RS20995 0.61 +0.8 842,635 - EX31_RS20995 0.61 +1.2 842,635 - EX31_RS20995 0.61 +0.2 842,635 - EX31_RS20995 0.61 -0.2 842,635 - EX31_RS20995 0.61 -0.1 842,635 - EX31_RS20995 0.61 -0.1 842,635 - EX31_RS20995 0.61 -0.3 842,635 - EX31_RS20995 0.61 -0.2 842,635 - EX31_RS20995 0.61 -0.1 842,635 - EX31_RS20995 0.61 +0.3 842,635 - EX31_RS20995 0.61 +0.9 842,635 - EX31_RS20995 0.61 -0.4 842,638 + EX31_RS20995 0.62 +0.8 842,638 + EX31_RS20995 0.62 +1.1 842,639 - EX31_RS20995 0.62 +0.7 842,639 - EX31_RS20995 0.62 -0.3 842,639 - EX31_RS20995 0.62 -0.5 842,639 - EX31_RS20995 0.62 -0.3 842,639 - EX31_RS20995 0.62 +0.2 842,639 - EX31_RS20995 0.62 +0.2 842,639 - EX31_RS20995 0.62 +0.3 842,639 - EX31_RS20995 0.62 -0.1 842,639 - EX31_RS20995 0.62 -0.0 842,644 - EX31_RS20995 0.63 -0.6 842,644 - EX31_RS20995 0.63 +0.7 842,715 + EX31_RS20995 0.79 -0.4 842,715 + EX31_RS20995 0.79 +0.2 842,716 - EX31_RS20995 0.79 +0.9 842,716 - EX31_RS20995 0.79 +0.9 842,757 + EX31_RS20995 0.88 +0.5 842,758 - EX31_RS20995 0.88 +0.9 842,758 - EX31_RS20995 0.88 +0.2 842,758 - EX31_RS20995 0.88 -1.7 842,758 - EX31_RS20995 0.88 +0.9 842,791 + -0.6 842,792 - +0.1 842,792 - +1.2 842,798 + +0.4 842,798 + +1.0 842,798 + +0.7 842,799 - +0.1 842,811 + +0.5 842,811 + +0.2 842,811 + -0.5 842,811 + -1.3 842,812 - -0.4 842,812 - -0.4 842,812 - +0.3 842,812 - -0.5 842,812 - +1.1 842,812 - -0.3 842,835 - +0.3 842,835 - -0.4 842,881 + -0.8 842,881 + +0.4 842,881 + -0.8 842,882 - -1.5 842,882 - -0.1 842,882 - -1.1 842,883 + +0.1 842,883 + -0.9 842,883 + -1.9 842,883 + -0.4 842,883 + -0.3 842,884 - -0.4 842,884 - -0.1 842,884 - +0.1 842,976 + -0.4 842,976 + -0.4 842,976 + -0.0 842,976 + -0.1 842,976 + +0.4 842,977 - +0.2 842,977 - +0.7 842,977 - -0.4 842,977 - -1.0 842,977 - +0.1 842,977 - -0.5 842,984 - +1.1 842,984 - +1.2 843,022 + +0.5 843,022 + +0.2 843,022 + -0.1 843,023 - +0.3 843,023 - -0.3 843,023 - -0.3 843,026 + +0.7 843,026 + -0.9 843,027 - -0.2 843,033 - -0.7 843,039 - +0.1 843,101 + +0.1 843,101 + -0.4 843,101 + +1.4 843,101 + +1.4 843,101 + -0.4 843,101 + +1.2 843,101 + -0.1 843,101 + -0.9 843,101 + -0.5 843,101 + -0.0 843,101 + -0.5 843,101 + -0.2 843,101 + +0.3 843,101 + -1.1 843,101 + +0.1 843,101 + +0.1 843,101 + +0.4 843,101 + -0.6 843,101 + -0.0 843,101 + +1.6 843,101 + +0.5 843,101 + -1.4 843,101 + +0.6 843,101 + -0.5 843,101 + +0.6 843,101 + -0.1 843,101 + -0.6 843,101 + -0.3 843,101 + +0.2 843,101 + -0.5 843,101 + -1.0 843,102 - -0.8 843,102 - +0.1 843,102 - +1.1 843,102 - -0.1 843,102 - +0.5 843,102 - +0.2 843,102 - -0.7 843,102 - +0.2 843,102 - -0.2 843,102 - -2.1 843,102 - +0.5 843,102 - -0.6 843,102 - +0.2 843,102 - +0.6 843,102 - -0.5 843,102 - +0.6 843,102 - -0.2 843,102 - +0.1 843,102 - +0.2 843,102 - -0.4 843,102 - +0.0 843,103 + +0.6 843,103 + -0.4 843,103 + -0.4 843,103 + -0.4 843,103 + -0.4 843,103 + +1.2 843,104 - +1.7 843,104 - +0.8 843,104 - +1.4 843,104 - +0.2 843,104 - -0.0 843,104 - -0.2 843,104 - +1.0 843,104 - +0.6 843,104 - +0.5 843,104 - -0.2 843,183 + -0.0 843,183 + +0.5 843,183 + -0.3 843,184 - -0.3 843,184 - -0.7 843,338 + EX31_RS21000 0.16 +0.5 843,363 - EX31_RS21000 0.18 -0.9 843,363 - EX31_RS21000 0.18 +0.5 843,363 - EX31_RS21000 0.18 -1.2 843,419 - EX31_RS21000 0.21 -0.2 843,499 + EX31_RS21000 0.27 -0.4 843,499 + EX31_RS21000 0.27 +1.8 843,499 + EX31_RS21000 0.27 -0.2 843,500 - EX31_RS21000 0.27 +0.4 843,583 + EX31_RS21000 0.33 +0.4 843,583 + EX31_RS21000 0.33 +1.6 843,583 + EX31_RS21000 0.33 -0.2 843,583 + EX31_RS21000 0.33 -0.5 843,633 + EX31_RS21000 0.36 +0.0 843,633 + EX31_RS21000 0.36 -0.3 843,633 + EX31_RS21000 0.36 +0.4 843,633 + EX31_RS21000 0.36 +1.0 843,634 - EX31_RS21000 0.36 -1.0 843,634 - EX31_RS21000 0.36 +0.3 843,769 + EX31_RS21000 0.45 +0.1 843,769 + EX31_RS21000 0.45 +0.2 843,769 + EX31_RS21000 0.45 -0.2 843,770 - EX31_RS21000 0.46 +0.7 843,770 - EX31_RS21000 0.46 +0.4 843,770 - EX31_RS21000 0.46 +0.8
Or see this region's nucleotide sequence