Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16605 and EX31_RS16610 are separated by 227 nucleotides EX31_RS16610 and EX31_RS16615 overlap by 4 nucleotides EX31_RS16615 and EX31_RS16620 are separated by 7 nucleotides
EX31_RS16605: EX31_RS16605 - iron permease, at 2,991 to 4,619
_RS16605
EX31_RS16610: EX31_RS16610 - glycosyltransferase family 2 protein, at 4,847 to 5,524
_RS16610
EX31_RS16615: EX31_RS16615 - membrane protein, at 5,521 to 6,090
_RS16615
EX31_RS16620: EX31_RS16620 - glycosyltransferase, at 6,098 to 7,258
_RS16620
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.604 kb on + strand at 4.604 kb on + strand at 4.605 kb on - strand at 4.605 kb on - strand at 4.605 kb on - strand at 4.706 kb on + strand at 4.706 kb on + strand at 4.737 kb on + strand at 4.743 kb on + strand at 4.744 kb on - strand at 4.750 kb on + strand at 4.917 kb on - strand, within EX31_RS16610 at 4.947 kb on - strand, within EX31_RS16610 at 4.947 kb on - strand, within EX31_RS16610 at 5.006 kb on - strand, within EX31_RS16610 at 5.108 kb on + strand, within EX31_RS16610 at 5.108 kb on + strand, within EX31_RS16610 at 5.140 kb on + strand, within EX31_RS16610 at 5.141 kb on - strand, within EX31_RS16610 at 5.141 kb on - strand, within EX31_RS16610 at 5.241 kb on - strand, within EX31_RS16610 at 5.242 kb on + strand, within EX31_RS16610 at 5.242 kb on + strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.328 kb on + strand, within EX31_RS16610 at 5.421 kb on - strand, within EX31_RS16610 at 5.544 kb on + strand at 5.544 kb on + strand at 5.683 kb on - strand, within EX31_RS16615 at 5.683 kb on - strand, within EX31_RS16615 at 5.684 kb on + strand, within EX31_RS16615 at 5.685 kb on - strand, within EX31_RS16615 at 5.908 kb on - strand, within EX31_RS16615 at 6.090 kb on + strand at 6.090 kb on + strand at 6.090 kb on + strand at 6.090 kb on + strand at 6.091 kb on - strand at 6.091 kb on - strand at 6.100 kb on - strand at 6.143 kb on + strand at 6.144 kb on - strand at 6.144 kb on - strand at 6.144 kb on - strand at 6.158 kb on + strand at 6.158 kb on + strand at 6.178 kb on + strand at 6.251 kb on - strand, within EX31_RS16620 at 6.688 kb on - strand, within EX31_RS16620 at 6.688 kb on - strand, within EX31_RS16620 at 6.803 kb on - strand, within EX31_RS16620 at 6.803 kb on - strand, within EX31_RS16620 at 6.822 kb on + strand, within EX31_RS16620 at 6.895 kb on + strand, within EX31_RS16620
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 4,604 + +0.3 4,604 + -0.5 4,605 - +0.3 4,605 - -0.1 4,605 - -0.2 4,706 + -1.0 4,706 + +1.0 4,737 + -0.4 4,743 + -0.3 4,744 - -0.2 4,750 + -0.5 4,917 - EX31_RS16610 0.10 +0.3 4,947 - EX31_RS16610 0.15 +0.5 4,947 - EX31_RS16610 0.15 +0.3 5,006 - EX31_RS16610 0.23 -1.3 5,108 + EX31_RS16610 0.38 +1.0 5,108 + EX31_RS16610 0.38 -1.2 5,140 + EX31_RS16610 0.43 -0.4 5,141 - EX31_RS16610 0.43 +1.3 5,141 - EX31_RS16610 0.43 +0.9 5,241 - EX31_RS16610 0.58 +0.5 5,242 + EX31_RS16610 0.58 -1.1 5,242 + EX31_RS16610 0.58 -1.5 5,243 - EX31_RS16610 0.58 -0.4 5,243 - EX31_RS16610 0.58 -0.6 5,243 - EX31_RS16610 0.58 -0.2 5,243 - EX31_RS16610 0.58 -0.0 5,328 + EX31_RS16610 0.71 +0.5 5,421 - EX31_RS16610 0.85 +2.1 5,544 + +0.4 5,544 + -0.0 5,683 - EX31_RS16615 0.28 -0.3 5,683 - EX31_RS16615 0.28 -0.5 5,684 + EX31_RS16615 0.29 -0.9 5,685 - EX31_RS16615 0.29 -1.2 5,908 - EX31_RS16615 0.68 -1.8 6,090 + +1.0 6,090 + +0.8 6,090 + +0.1 6,090 + +0.5 6,091 - -0.3 6,091 - +0.8 6,100 - -1.4 6,143 + +0.4 6,144 - +0.4 6,144 - -0.0 6,144 - -1.2 6,158 + -0.7 6,158 + -1.1 6,178 + -0.7 6,251 - EX31_RS16620 0.13 -0.5 6,688 - EX31_RS16620 0.51 +0.4 6,688 - EX31_RS16620 0.51 +0.9 6,803 - EX31_RS16620 0.61 +0.8 6,803 - EX31_RS16620 0.61 -1.3 6,822 + EX31_RS16620 0.62 -0.0 6,895 + EX31_RS16620 0.69 +1.8
Or see this region's nucleotide sequence