Strain Fitness in Rahnella sp. WP5 around EX31_RS15640

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15635 and EX31_RS15640 are separated by 342 nucleotidesEX31_RS15640 and EX31_RS15645 are separated by 215 nucleotides EX31_RS15635: EX31_RS15635 - HAMP domain-containing protein, at 24,042 to 25,871 _RS15635 EX31_RS15640: EX31_RS15640 - porphobilinogen synthase, at 26,214 to 27,188 _RS15640 EX31_RS15645: EX31_RS15645 - peptidase domain-containing ABC transporter, at 27,404 to 29,503 _RS15645 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.304 kb on + strand, within EX31_RS15635at 25.305 kb on - strand, within EX31_RS15635at 25.326 kb on + strand, within EX31_RS15635at 25.409 kb on - strand, within EX31_RS15635at 25.520 kb on - strand, within EX31_RS15635at 25.547 kb on + strand, within EX31_RS15635at 25.618 kb on - strand, within EX31_RS15635at 25.667 kb on - strand, within EX31_RS15635at 25.707 kb on + strandat 25.726 kb on - strandat 25.749 kb on - strandat 25.774 kb on - strandat 25.816 kb on - strandat 25.901 kb on + strandat 25.909 kb on + strandat 25.947 kb on + strandat 26.040 kb on + strandat 26.047 kb on + strandat 26.048 kb on - strandat 26.050 kb on + strandat 26.051 kb on - strandat 26.061 kb on + strandat 26.087 kb on + strandat 26.111 kb on + strandat 26.130 kb on + strandat 26.130 kb on + strandat 26.130 kb on + strandat 26.142 kb on + strandat 27.300 kb on + strandat 27.306 kb on - strandat 27.344 kb on + strandat 27.344 kb on + strandat 27.345 kb on - strandat 27.460 kb on + strandat 27.473 kb on - strandat 27.686 kb on - strand, within EX31_RS15645at 27.686 kb on - strand, within EX31_RS15645at 27.758 kb on - strand, within EX31_RS15645

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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25,304 + EX31_RS15635 0.69 +0.1
25,305 - EX31_RS15635 0.69 +0.4
25,326 + EX31_RS15635 0.70 -1.3
25,409 - EX31_RS15635 0.75 +0.1
25,520 - EX31_RS15635 0.81 -1.7
25,547 + EX31_RS15635 0.82 -0.4
25,618 - EX31_RS15635 0.86 +0.7
25,667 - EX31_RS15635 0.89 +0.6
25,707 + -2.2
25,726 - +0.0
25,749 - +0.1
25,774 - -0.0
25,816 - +0.0
25,901 + -0.7
25,909 + -0.9
25,947 + -0.1
26,040 + -0.2
26,047 + -0.1
26,048 - +0.6
26,050 + -0.6
26,051 - -0.2
26,061 + +0.2
26,087 + -0.5
26,111 + -0.5
26,130 + +0.0
26,130 + +0.1
26,130 + +0.1
26,142 + -0.5
27,300 + +0.4
27,306 - +0.4
27,344 + -1.5
27,344 + +0.4
27,345 - -0.0
27,460 + +0.6
27,473 - -0.4
27,686 - EX31_RS15645 0.13 +0.7
27,686 - EX31_RS15645 0.13 -0.3
27,758 - EX31_RS15645 0.17 -0.2

Or see this region's nucleotide sequence