Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24370 and EX31_RS24375 are separated by 144 nucleotides EX31_RS24375 and EX31_RS24380 are separated by 346 nucleotides EX31_RS24380 and EX31_RS24385 are separated by 81 nucleotides
EX31_RS24370: EX31_RS24370 - N-methyl-L-tryptophan oxidase, at 642,089 to 643,204
_RS24370
EX31_RS24375: EX31_RS24375 - biofilm formation regulator BssS, at 643,349 to 643,603
_RS24375
EX31_RS24380: EX31_RS24380 - DNA damage-inducible protein I, at 643,950 to 644,204
_RS24380
EX31_RS24385: EX31_RS24385 - dihydroorotase, at 644,286 to 645,335
_RS24385
Position (kb) 643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 643.027 kb on - strand, within EX31_RS24370 at 643.108 kb on + strand at 643.112 kb on + strand at 643.112 kb on + strand at 643.112 kb on + strand at 643.112 kb on + strand at 643.113 kb on - strand at 643.146 kb on + strand at 643.146 kb on + strand at 643.146 kb on + strand at 643.146 kb on + strand at 643.147 kb on - strand at 643.197 kb on + strand at 643.197 kb on + strand at 643.257 kb on + strand at 643.257 kb on + strand at 643.258 kb on - strand at 643.343 kb on + strand at 643.351 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.378 kb on - strand, within EX31_RS24375 at 643.378 kb on - strand, within EX31_RS24375 at 643.385 kb on - strand, within EX31_RS24375 at 643.421 kb on - strand, within EX31_RS24375 at 643.445 kb on - strand, within EX31_RS24375 at 643.448 kb on + strand, within EX31_RS24375 at 643.506 kb on + strand, within EX31_RS24375 at 643.506 kb on + strand, within EX31_RS24375 at 643.507 kb on - strand, within EX31_RS24375 at 643.517 kb on + strand, within EX31_RS24375 at 643.582 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.606 kb on - strand at 643.606 kb on - strand at 643.606 kb on - strand at 643.614 kb on + strand at 643.615 kb on - strand at 643.615 kb on - strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.617 kb on - strand at 643.617 kb on - strand at 643.617 kb on - strand at 643.621 kb on + strand at 643.621 kb on + strand at 643.622 kb on - strand at 643.665 kb on + strand at 643.695 kb on + strand at 643.737 kb on + strand at 643.905 kb on - strand at 643.908 kb on + strand at 643.909 kb on - strand at 643.909 kb on - strand at 644.060 kb on + strand, within EX31_RS24380 at 644.061 kb on - strand, within EX31_RS24380 at 644.118 kb on - strand, within EX31_RS24380 at 644.126 kb on + strand, within EX31_RS24380 at 644.181 kb on - strand at 644.204 kb on + strand at 644.204 kb on + strand at 644.205 kb on - strand at 644.205 kb on - strand at 644.287 kb on + strand at 644.288 kb on - strand at 644.288 kb on - strand at 644.384 kb on + strand at 644.500 kb on + strand, within EX31_RS24385 at 644.756 kb on - strand, within EX31_RS24385 at 644.776 kb on + strand, within EX31_RS24385 at 644.776 kb on + strand, within EX31_RS24385 at 644.777 kb on - strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.949 kb on - strand, within EX31_RS24385 at 645.023 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.122 kb on + strand, within EX31_RS24385 at 645.122 kb on + strand, within EX31_RS24385 at 645.147 kb on - strand, within EX31_RS24385
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 643,027 - EX31_RS24370 0.84 +0.1 643,108 + +0.4 643,112 + -0.1 643,112 + -0.5 643,112 + -0.6 643,112 + +1.6 643,113 - -0.8 643,146 + -1.5 643,146 + +0.1 643,146 + +1.1 643,146 + -0.1 643,147 - -1.8 643,197 + +0.3 643,197 + +1.0 643,257 + -0.7 643,257 + +0.7 643,258 - -1.1 643,343 + -0.3 643,351 - +0.1 643,372 - -0.9 643,372 - +0.1 643,372 - -0.0 643,372 - -3.3 643,378 - EX31_RS24375 0.11 +0.7 643,378 - EX31_RS24375 0.11 +0.2 643,385 - EX31_RS24375 0.14 -0.5 643,421 - EX31_RS24375 0.28 +0.2 643,445 - EX31_RS24375 0.38 +1.2 643,448 + EX31_RS24375 0.39 -0.6 643,506 + EX31_RS24375 0.62 +0.6 643,506 + EX31_RS24375 0.62 -0.8 643,507 - EX31_RS24375 0.62 +0.7 643,517 + EX31_RS24375 0.66 +1.1 643,582 + +0.6 643,605 + +0.1 643,605 + -1.2 643,605 + -0.3 643,605 + -0.2 643,606 - -0.3 643,606 - +0.2 643,606 - -3.0 643,614 + -0.5 643,615 - -0.6 643,615 - -1.1 643,616 + -0.3 643,616 + -1.3 643,616 + -0.9 643,616 + -0.4 643,616 + -0.4 643,617 - +0.0 643,617 - -0.2 643,617 - +1.1 643,621 + -0.2 643,621 + -1.5 643,622 - -0.6 643,665 + -0.3 643,695 + +0.5 643,737 + +0.5 643,905 - -1.3 643,908 + -1.7 643,909 - -0.7 643,909 - -0.1 644,060 + EX31_RS24380 0.43 -3.0 644,061 - EX31_RS24380 0.44 -0.8 644,118 - EX31_RS24380 0.66 -1.0 644,126 + EX31_RS24380 0.69 -1.9 644,181 - +0.2 644,204 + +0.7 644,204 + +0.5 644,205 - +0.8 644,205 - -0.7 644,287 + -0.9 644,288 - -2.0 644,288 - +0.4 644,384 + -1.9 644,500 + EX31_RS24385 0.20 -1.5 644,756 - EX31_RS24385 0.45 -0.2 644,776 + EX31_RS24385 0.47 -3.0 644,776 + EX31_RS24385 0.47 -2.2 644,777 - EX31_RS24385 0.47 -0.9 644,948 + EX31_RS24385 0.63 +0.6 644,948 + EX31_RS24385 0.63 -1.2 644,948 + EX31_RS24385 0.63 -0.4 644,948 + EX31_RS24385 0.63 -2.9 644,949 - EX31_RS24385 0.63 -0.6 645,023 - EX31_RS24385 0.70 +0.2 645,098 - EX31_RS24385 0.77 -3.2 645,098 - EX31_RS24385 0.77 -2.3 645,098 - EX31_RS24385 0.77 -1.7 645,098 - EX31_RS24385 0.77 -1.8 645,122 + EX31_RS24385 0.80 -1.8 645,122 + EX31_RS24385 0.80 -1.2 645,147 - EX31_RS24385 0.82 +0.1
Or see this region's nucleotide sequence