Strain Fitness in Rahnella sp. WP5 around EX31_RS23645

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS23640 and EX31_RS23645 are separated by 254 nucleotidesEX31_RS23645 and EX31_RS23650 are separated by 82 nucleotides EX31_RS23640: EX31_RS23640 - 6-phosphogluconolactonase, at 491,716 to 492,714 _RS23640 EX31_RS23645: EX31_RS23645 - HAMP domain-containing protein, at 492,969 to 494,480 _RS23645 EX31_RS23650: EX31_RS23650 - putative acyl-CoA thioester hydrolase, at 494,563 to 495,843 _RS23650 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.976 kb on + strand, within EX31_RS23640at 492.014 kb on - strand, within EX31_RS23640at 492.021 kb on + strand, within EX31_RS23640at 492.256 kb on - strand, within EX31_RS23640at 492.256 kb on - strand, within EX31_RS23640at 492.293 kb on + strand, within EX31_RS23640at 492.293 kb on + strand, within EX31_RS23640at 492.294 kb on - strand, within EX31_RS23640at 492.294 kb on - strand, within EX31_RS23640at 492.375 kb on + strand, within EX31_RS23640at 492.375 kb on + strand, within EX31_RS23640at 492.446 kb on - strand, within EX31_RS23640at 492.577 kb on + strand, within EX31_RS23640at 492.577 kb on + strand, within EX31_RS23640at 492.578 kb on - strand, within EX31_RS23640at 492.578 kb on - strand, within EX31_RS23640at 492.742 kb on + strandat 492.743 kb on - strandat 492.767 kb on + strandat 492.830 kb on + strandat 492.830 kb on + strandat 492.866 kb on + strandat 492.866 kb on + strandat 492.867 kb on - strandat 492.976 kb on + strandat 492.976 kb on + strandat 492.977 kb on - strandat 493.133 kb on + strand, within EX31_RS23645at 493.133 kb on + strand, within EX31_RS23645at 493.134 kb on - strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.182 kb on + strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.183 kb on - strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.184 kb on + strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.185 kb on - strand, within EX31_RS23645at 493.270 kb on - strand, within EX31_RS23645at 493.270 kb on - strand, within EX31_RS23645at 493.270 kb on - strand, within EX31_RS23645at 493.625 kb on + strand, within EX31_RS23645at 493.625 kb on + strand, within EX31_RS23645at 493.762 kb on + strand, within EX31_RS23645at 493.763 kb on - strand, within EX31_RS23645at 493.772 kb on + strand, within EX31_RS23645at 493.772 kb on + strand, within EX31_RS23645at 493.773 kb on - strand, within EX31_RS23645at 493.935 kb on - strand, within EX31_RS23645at 493.973 kb on + strand, within EX31_RS23645at 494.004 kb on - strand, within EX31_RS23645at 494.039 kb on + strand, within EX31_RS23645at 494.178 kb on - strand, within EX31_RS23645at 494.178 kb on - strand, within EX31_RS23645at 494.479 kb on - strandat 494.564 kb on + strandat 494.565 kb on - strandat 494.565 kb on - strandat 494.565 kb on - strandat 494.594 kb on + strandat 494.595 kb on - strandat 494.617 kb on - strandat 494.617 kb on - strandat 494.617 kb on - strandat 494.717 kb on + strand, within EX31_RS23650at 494.717 kb on + strand, within EX31_RS23650at 494.717 kb on + strand, within EX31_RS23650at 494.717 kb on + strand, within EX31_RS23650at 494.717 kb on + strand, within EX31_RS23650at 494.718 kb on - strand, within EX31_RS23650at 494.718 kb on - strand, within EX31_RS23650at 494.718 kb on - strand, within EX31_RS23650at 494.718 kb on - strand, within EX31_RS23650at 494.747 kb on - strand, within EX31_RS23650at 494.968 kb on + strand, within EX31_RS23650at 494.969 kb on - strand, within EX31_RS23650at 494.969 kb on - strand, within EX31_RS23650at 494.969 kb on - strand, within EX31_RS23650at 494.972 kb on + strand, within EX31_RS23650at 494.973 kb on - strand, within EX31_RS23650at 494.973 kb on - strand, within EX31_RS23650at 494.973 kb on - strand, within EX31_RS23650at 494.973 kb on - strand, within EX31_RS23650at 495.000 kb on + strand, within EX31_RS23650at 495.001 kb on - strand, within EX31_RS23650at 495.001 kb on - strand, within EX31_RS23650at 495.001 kb on - strand, within EX31_RS23650at 495.001 kb on - strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.008 kb on + strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.009 kb on - strand, within EX31_RS23650at 495.020 kb on + strand, within EX31_RS23650at 495.067 kb on - strand, within EX31_RS23650at 495.067 kb on - strand, within EX31_RS23650at 495.166 kb on - strand, within EX31_RS23650at 495.288 kb on + strand, within EX31_RS23650at 495.288 kb on + strand, within EX31_RS23650at 495.288 kb on + strand, within EX31_RS23650at 495.288 kb on + strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.289 kb on - strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.290 kb on + strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.291 kb on - strand, within EX31_RS23650at 495.419 kb on - strand, within EX31_RS23650at 495.449 kb on + strand, within EX31_RS23650at 495.450 kb on - strand, within EX31_RS23650at 495.450 kb on - strand, within EX31_RS23650at 495.450 kb on - strand, within EX31_RS23650at 495.450 kb on - strand, within EX31_RS23650at 495.464 kb on + strand, within EX31_RS23650at 495.464 kb on + strand, within EX31_RS23650at 495.464 kb on + strand, within EX31_RS23650at 495.464 kb on + strand, within EX31_RS23650at 495.464 kb on + strand, within EX31_RS23650at 495.465 kb on - strand, within EX31_RS23650at 495.465 kb on - strand, within EX31_RS23650at 495.465 kb on - strand, within EX31_RS23650at 495.465 kb on - strand, within EX31_RS23650at 495.465 kb on - strand, within EX31_RS23650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
491,976 + EX31_RS23640 0.26 +0.1
492,014 - EX31_RS23640 0.30 -1.8
492,021 + EX31_RS23640 0.31 +1.5
492,256 - EX31_RS23640 0.54 -0.0
492,256 - EX31_RS23640 0.54 +0.8
492,293 + EX31_RS23640 0.58 +0.8
492,293 + EX31_RS23640 0.58 -1.2
492,294 - EX31_RS23640 0.58 +0.0
492,294 - EX31_RS23640 0.58 +1.2
492,375 + EX31_RS23640 0.66 -0.6
492,375 + EX31_RS23640 0.66 -2.2
492,446 - EX31_RS23640 0.73 -0.4
492,577 + EX31_RS23640 0.86 -0.1
492,577 + EX31_RS23640 0.86 -0.3
492,578 - EX31_RS23640 0.86 -0.4
492,578 - EX31_RS23640 0.86 +0.1
492,742 + -1.4
492,743 - -0.2
492,767 + -0.3
492,830 + -0.1
492,830 + +0.4
492,866 + -1.3
492,866 + -0.1
492,867 - +0.7
492,976 + -0.1
492,976 + +0.2
492,977 - +0.9
493,133 + EX31_RS23645 0.11 -0.3
493,133 + EX31_RS23645 0.11 +0.5
493,134 - EX31_RS23645 0.11 -0.4
493,182 + EX31_RS23645 0.14 -0.3
493,182 + EX31_RS23645 0.14 -0.5
493,182 + EX31_RS23645 0.14 +0.3
493,182 + EX31_RS23645 0.14 +0.8
493,182 + EX31_RS23645 0.14 -0.5
493,182 + EX31_RS23645 0.14 -0.2
493,182 + EX31_RS23645 0.14 +0.8
493,182 + EX31_RS23645 0.14 +0.7
493,182 + EX31_RS23645 0.14 +0.2
493,182 + EX31_RS23645 0.14 -1.0
493,182 + EX31_RS23645 0.14 -0.6
493,183 - EX31_RS23645 0.14 +0.2
493,183 - EX31_RS23645 0.14 -0.1
493,183 - EX31_RS23645 0.14 -0.0
493,183 - EX31_RS23645 0.14 -0.8
493,183 - EX31_RS23645 0.14 +0.2
493,183 - EX31_RS23645 0.14 -0.8
493,183 - EX31_RS23645 0.14 -0.1
493,183 - EX31_RS23645 0.14 +0.2
493,183 - EX31_RS23645 0.14 -0.2
493,183 - EX31_RS23645 0.14 -0.8
493,183 - EX31_RS23645 0.14 -1.4
493,183 - EX31_RS23645 0.14 +0.4
493,183 - EX31_RS23645 0.14 -0.5
493,183 - EX31_RS23645 0.14 -2.3
493,183 - EX31_RS23645 0.14 +0.3
493,184 + EX31_RS23645 0.14 -0.5
493,184 + EX31_RS23645 0.14 +1.0
493,184 + EX31_RS23645 0.14 -0.9
493,184 + EX31_RS23645 0.14 -0.0
493,184 + EX31_RS23645 0.14 +0.3
493,184 + EX31_RS23645 0.14 +1.1
493,185 - EX31_RS23645 0.14 +0.1
493,185 - EX31_RS23645 0.14 -0.4
493,185 - EX31_RS23645 0.14 -0.1
493,185 - EX31_RS23645 0.14 +0.7
493,185 - EX31_RS23645 0.14 -0.4
493,185 - EX31_RS23645 0.14 +0.7
493,185 - EX31_RS23645 0.14 +0.0
493,185 - EX31_RS23645 0.14 -0.5
493,185 - EX31_RS23645 0.14 -0.8
493,185 - EX31_RS23645 0.14 +2.7
493,270 - EX31_RS23645 0.20 -0.6
493,270 - EX31_RS23645 0.20 -0.5
493,270 - EX31_RS23645 0.20 -2.6
493,625 + EX31_RS23645 0.43 +0.1
493,625 + EX31_RS23645 0.43 -0.1
493,762 + EX31_RS23645 0.52 +0.2
493,763 - EX31_RS23645 0.53 +0.2
493,772 + EX31_RS23645 0.53 +0.2
493,772 + EX31_RS23645 0.53 -0.4
493,773 - EX31_RS23645 0.53 +0.8
493,935 - EX31_RS23645 0.64 +0.6
493,973 + EX31_RS23645 0.66 +0.6
494,004 - EX31_RS23645 0.68 -0.0
494,039 + EX31_RS23645 0.71 -0.3
494,178 - EX31_RS23645 0.80 -0.1
494,178 - EX31_RS23645 0.80 +0.5
494,479 - -3.0
494,564 + -2.2
494,565 - -1.1
494,565 - +0.1
494,565 - +0.0
494,594 + +0.2
494,595 - +0.2
494,617 - -0.4
494,617 - -0.4
494,617 - -0.8
494,717 + EX31_RS23650 0.12 -0.5
494,717 + EX31_RS23650 0.12 -0.1
494,717 + EX31_RS23650 0.12 -0.1
494,717 + EX31_RS23650 0.12 -0.6
494,717 + EX31_RS23650 0.12 -1.3
494,718 - EX31_RS23650 0.12 +1.4
494,718 - EX31_RS23650 0.12 -0.3
494,718 - EX31_RS23650 0.12 -0.7
494,718 - EX31_RS23650 0.12 +0.2
494,747 - EX31_RS23650 0.14 +1.4
494,968 + EX31_RS23650 0.32 -0.1
494,969 - EX31_RS23650 0.32 -0.4
494,969 - EX31_RS23650 0.32 -0.1
494,969 - EX31_RS23650 0.32 -0.4
494,972 + EX31_RS23650 0.32 -0.2
494,973 - EX31_RS23650 0.32 +1.2
494,973 - EX31_RS23650 0.32 -0.2
494,973 - EX31_RS23650 0.32 +0.0
494,973 - EX31_RS23650 0.32 -0.4
495,000 + EX31_RS23650 0.34 -0.0
495,001 - EX31_RS23650 0.34 +0.0
495,001 - EX31_RS23650 0.34 +1.0
495,001 - EX31_RS23650 0.34 -0.6
495,001 - EX31_RS23650 0.34 -0.3
495,008 + EX31_RS23650 0.35 -1.0
495,008 + EX31_RS23650 0.35 -0.1
495,008 + EX31_RS23650 0.35 +0.5
495,008 + EX31_RS23650 0.35 +0.2
495,008 + EX31_RS23650 0.35 +0.1
495,008 + EX31_RS23650 0.35 -0.9
495,008 + EX31_RS23650 0.35 +0.2
495,009 - EX31_RS23650 0.35 -1.3
495,009 - EX31_RS23650 0.35 -0.7
495,009 - EX31_RS23650 0.35 -0.3
495,009 - EX31_RS23650 0.35 +0.7
495,009 - EX31_RS23650 0.35 +1.0
495,009 - EX31_RS23650 0.35 +0.0
495,009 - EX31_RS23650 0.35 +0.4
495,009 - EX31_RS23650 0.35 +0.2
495,009 - EX31_RS23650 0.35 -0.8
495,009 - EX31_RS23650 0.35 +0.5
495,020 + EX31_RS23650 0.36 -0.1
495,067 - EX31_RS23650 0.39 -1.8
495,067 - EX31_RS23650 0.39 -0.0
495,166 - EX31_RS23650 0.47 +0.6
495,288 + EX31_RS23650 0.57 -0.5
495,288 + EX31_RS23650 0.57 +0.6
495,288 + EX31_RS23650 0.57 -0.5
495,288 + EX31_RS23650 0.57 -0.3
495,289 - EX31_RS23650 0.57 -0.1
495,289 - EX31_RS23650 0.57 -0.2
495,289 - EX31_RS23650 0.57 +0.6
495,289 - EX31_RS23650 0.57 -0.6
495,289 - EX31_RS23650 0.57 -1.8
495,289 - EX31_RS23650 0.57 -0.3
495,289 - EX31_RS23650 0.57 -0.6
495,290 + EX31_RS23650 0.57 +0.1
495,290 + EX31_RS23650 0.57 +0.1
495,290 + EX31_RS23650 0.57 -0.9
495,290 + EX31_RS23650 0.57 -1.1
495,290 + EX31_RS23650 0.57 -1.0
495,290 + EX31_RS23650 0.57 -0.9
495,290 + EX31_RS23650 0.57 -0.2
495,290 + EX31_RS23650 0.57 -1.7
495,290 + EX31_RS23650 0.57 +0.3
495,290 + EX31_RS23650 0.57 +0.0
495,290 + EX31_RS23650 0.57 -0.4
495,290 + EX31_RS23650 0.57 -0.1
495,290 + EX31_RS23650 0.57 -2.1
495,291 - EX31_RS23650 0.57 -1.5
495,291 - EX31_RS23650 0.57 -1.6
495,291 - EX31_RS23650 0.57 -2.0
495,291 - EX31_RS23650 0.57 -1.5
495,291 - EX31_RS23650 0.57 +0.4
495,291 - EX31_RS23650 0.57 -1.0
495,291 - EX31_RS23650 0.57 -0.3
495,291 - EX31_RS23650 0.57 -1.2
495,291 - EX31_RS23650 0.57 +0.0
495,291 - EX31_RS23650 0.57 -0.6
495,419 - EX31_RS23650 0.67 +0.7
495,449 + EX31_RS23650 0.69 +0.7
495,450 - EX31_RS23650 0.69 -1.8
495,450 - EX31_RS23650 0.69 -1.1
495,450 - EX31_RS23650 0.69 -1.4
495,450 - EX31_RS23650 0.69 -0.4
495,464 + EX31_RS23650 0.70 -0.6
495,464 + EX31_RS23650 0.70 -3.6
495,464 + EX31_RS23650 0.70 -1.4
495,464 + EX31_RS23650 0.70 +0.0
495,464 + EX31_RS23650 0.70 -0.3
495,465 - EX31_RS23650 0.70 -1.6
495,465 - EX31_RS23650 0.70 -0.9
495,465 - EX31_RS23650 0.70 -0.2
495,465 - EX31_RS23650 0.70 +0.7
495,465 - EX31_RS23650 0.70 -1.8

Or see this region's nucleotide sequence