Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22765 and EX31_RS22770 are separated by 108 nucleotides EX31_RS22770 and EX31_RS22775 are separated by 79 nucleotides
EX31_RS22765: EX31_RS22765 - tRNA(Met) cytidine acetyltransferase, at 312,023 to 314,008
_RS22765
EX31_RS22770: EX31_RS22770 - esterase, at 314,117 to 314,767
_RS22770
EX31_RS22775: EX31_RS22775 - phosphoserine transaminase, at 314,847 to 315,947
_RS22775
Position (kb) 314
315 Strain fitness (log2 ratio) -2
-1
0
1 at 313.128 kb on + strand, within EX31_RS22765 at 313.140 kb on - strand, within EX31_RS22765 at 313.523 kb on + strand, within EX31_RS22765 at 313.720 kb on - strand, within EX31_RS22765 at 313.846 kb on - strand at 314.006 kb on + strand at 314.082 kb on - strand at 314.083 kb on + strand at 314.083 kb on + strand at 314.083 kb on + strand at 314.095 kb on + strand at 314.095 kb on + strand at 314.095 kb on + strand at 314.096 kb on - strand at 314.096 kb on - strand at 314.096 kb on - strand at 314.096 kb on - strand at 314.096 kb on - strand at 314.176 kb on - strand at 314.262 kb on + strand, within EX31_RS22770 at 314.281 kb on + strand, within EX31_RS22770 at 314.436 kb on + strand, within EX31_RS22770 at 314.436 kb on + strand, within EX31_RS22770 at 314.437 kb on - strand, within EX31_RS22770 at 314.437 kb on - strand, within EX31_RS22770 at 314.437 kb on - strand, within EX31_RS22770 at 314.510 kb on - strand, within EX31_RS22770 at 314.662 kb on + strand, within EX31_RS22770 at 314.663 kb on - strand, within EX31_RS22770 at 314.663 kb on - strand, within EX31_RS22770 at 314.663 kb on - strand, within EX31_RS22770 at 314.713 kb on + strand at 314.713 kb on + strand at 314.713 kb on + strand at 314.829 kb on - strand at 314.867 kb on + strand at 314.868 kb on - strand at 314.924 kb on - strand at 314.924 kb on - strand at 314.924 kb on - strand at 314.928 kb on - strand at 315.033 kb on - strand, within EX31_RS22775 at 315.082 kb on + strand, within EX31_RS22775 at 315.083 kb on - strand, within EX31_RS22775 at 315.083 kb on - strand, within EX31_RS22775 at 315.113 kb on - strand, within EX31_RS22775 at 315.113 kb on - strand, within EX31_RS22775 at 315.113 kb on - strand, within EX31_RS22775 at 315.129 kb on - strand, within EX31_RS22775 at 315.149 kb on + strand, within EX31_RS22775 at 315.173 kb on + strand, within EX31_RS22775 at 315.205 kb on + strand, within EX31_RS22775 at 315.205 kb on + strand, within EX31_RS22775 at 315.206 kb on - strand, within EX31_RS22775 at 315.206 kb on - strand, within EX31_RS22775 at 315.206 kb on - strand, within EX31_RS22775 at 315.206 kb on - strand, within EX31_RS22775 at 315.217 kb on - strand, within EX31_RS22775 at 315.228 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.368 kb on - strand, within EX31_RS22775 at 315.499 kb on + strand, within EX31_RS22775 at 315.499 kb on + strand, within EX31_RS22775 at 315.499 kb on + strand, within EX31_RS22775 at 315.500 kb on - strand, within EX31_RS22775 at 315.500 kb on - strand, within EX31_RS22775 at 315.500 kb on - strand, within EX31_RS22775 at 315.500 kb on - strand, within EX31_RS22775 at 315.500 kb on - strand, within EX31_RS22775 at 315.626 kb on + strand, within EX31_RS22775 at 315.627 kb on - strand, within EX31_RS22775 at 315.627 kb on - strand, within EX31_RS22775
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 313,128 + EX31_RS22765 0.56 -0.3 313,140 - EX31_RS22765 0.56 -0.5 313,523 + EX31_RS22765 0.76 -1.1 313,720 - EX31_RS22765 0.85 +0.3 313,846 - +0.8 314,006 + -0.6 314,082 - -0.5 314,083 + -0.3 314,083 + -0.1 314,083 + -0.9 314,095 + -0.5 314,095 + -0.7 314,095 + -1.4 314,096 - -0.3 314,096 - +0.9 314,096 - -1.0 314,096 - +0.1 314,096 - -0.6 314,176 - +1.0 314,262 + EX31_RS22770 0.22 -1.9 314,281 + EX31_RS22770 0.25 -0.4 314,436 + EX31_RS22770 0.49 -0.9 314,436 + EX31_RS22770 0.49 -0.8 314,437 - EX31_RS22770 0.49 -0.9 314,437 - EX31_RS22770 0.49 -0.3 314,437 - EX31_RS22770 0.49 -1.5 314,510 - EX31_RS22770 0.60 -1.1 314,662 + EX31_RS22770 0.84 -1.1 314,663 - EX31_RS22770 0.84 +0.2 314,663 - EX31_RS22770 0.84 +0.9 314,663 - EX31_RS22770 0.84 -1.9 314,713 + +0.1 314,713 + -1.5 314,713 + +1.1 314,829 - -0.6 314,867 + -2.3 314,868 - -2.0 314,924 - -0.5 314,924 - -1.9 314,924 - +0.7 314,928 - -0.3 315,033 - EX31_RS22775 0.17 -1.2 315,082 + EX31_RS22775 0.21 -1.6 315,083 - EX31_RS22775 0.21 +0.3 315,083 - EX31_RS22775 0.21 +0.7 315,113 - EX31_RS22775 0.24 -0.7 315,113 - EX31_RS22775 0.24 +0.0 315,113 - EX31_RS22775 0.24 +0.2 315,129 - EX31_RS22775 0.26 -0.0 315,149 + EX31_RS22775 0.27 -0.4 315,173 + EX31_RS22775 0.30 +0.6 315,205 + EX31_RS22775 0.33 +1.1 315,205 + EX31_RS22775 0.33 +0.3 315,206 - EX31_RS22775 0.33 +1.5 315,206 - EX31_RS22775 0.33 +0.3 315,206 - EX31_RS22775 0.33 -0.3 315,206 - EX31_RS22775 0.33 +0.1 315,217 - EX31_RS22775 0.34 -0.0 315,228 - EX31_RS22775 0.35 +0.8 315,368 - EX31_RS22775 0.47 -0.6 315,368 - EX31_RS22775 0.47 +0.1 315,368 - EX31_RS22775 0.47 -0.6 315,368 - EX31_RS22775 0.47 -0.3 315,368 - EX31_RS22775 0.47 +1.5 315,368 - EX31_RS22775 0.47 -0.7 315,368 - EX31_RS22775 0.47 +0.7 315,499 + EX31_RS22775 0.59 -0.0 315,499 + EX31_RS22775 0.59 -0.9 315,499 + EX31_RS22775 0.59 -1.5 315,500 - EX31_RS22775 0.59 -0.4 315,500 - EX31_RS22775 0.59 -0.2 315,500 - EX31_RS22775 0.59 -0.3 315,500 - EX31_RS22775 0.59 -0.1 315,500 - EX31_RS22775 0.59 -1.5 315,626 + EX31_RS22775 0.71 -1.4 315,627 - EX31_RS22775 0.71 -1.4 315,627 - EX31_RS22775 0.71 +1.6
Or see this region's nucleotide sequence