Strain Fitness in Rahnella sp. WP5 around EX31_RS20570

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20565 and EX31_RS20570 overlap by 10 nucleotidesEX31_RS20570 and EX31_RS20575 are separated by 181 nucleotides EX31_RS20565: EX31_RS20565 - nickel/cobalt transporter, at 750,663 to 751,682 _RS20565 EX31_RS20570: EX31_RS20570 - DUF1007 family protein, at 751,673 to 752,344 _RS20570 EX31_RS20575: EX31_RS20575 - stationary phase inducible protein CsiE, at 752,526 to 753,806 _RS20575 Position (kb) 751 752 753Strain fitness (log2 ratio) -2 -1 0 1at 750.816 kb on + strand, within EX31_RS20565at 750.842 kb on - strand, within EX31_RS20565at 750.842 kb on - strand, within EX31_RS20565at 750.849 kb on + strand, within EX31_RS20565at 750.849 kb on + strand, within EX31_RS20565at 750.850 kb on - strand, within EX31_RS20565at 750.850 kb on - strand, within EX31_RS20565at 750.852 kb on + strand, within EX31_RS20565at 750.852 kb on + strand, within EX31_RS20565at 750.852 kb on + strand, within EX31_RS20565at 750.852 kb on + strand, within EX31_RS20565at 750.852 kb on + strand, within EX31_RS20565at 750.853 kb on - strand, within EX31_RS20565at 750.853 kb on - strand, within EX31_RS20565at 750.853 kb on - strand, within EX31_RS20565at 750.896 kb on + strand, within EX31_RS20565at 750.897 kb on - strand, within EX31_RS20565at 750.897 kb on - strand, within EX31_RS20565at 750.922 kb on + strand, within EX31_RS20565at 750.978 kb on + strand, within EX31_RS20565at 750.978 kb on + strand, within EX31_RS20565at 751.305 kb on + strand, within EX31_RS20565at 751.305 kb on + strand, within EX31_RS20565at 751.306 kb on - strand, within EX31_RS20565at 751.306 kb on - strand, within EX31_RS20565at 751.308 kb on + strand, within EX31_RS20565at 751.308 kb on + strand, within EX31_RS20565at 751.308 kb on + strand, within EX31_RS20565at 751.308 kb on + strand, within EX31_RS20565at 751.309 kb on - strand, within EX31_RS20565at 751.309 kb on - strand, within EX31_RS20565at 751.309 kb on - strand, within EX31_RS20565at 751.309 kb on - strand, within EX31_RS20565at 751.391 kb on - strand, within EX31_RS20565at 751.391 kb on - strand, within EX31_RS20565at 751.391 kb on - strand, within EX31_RS20565at 751.391 kb on - strand, within EX31_RS20565at 751.391 kb on - strand, within EX31_RS20565at 751.454 kb on + strand, within EX31_RS20565at 751.455 kb on - strand, within EX31_RS20565at 751.473 kb on - strand, within EX31_RS20565at 751.530 kb on + strand, within EX31_RS20565at 751.530 kb on + strand, within EX31_RS20565at 751.530 kb on + strand, within EX31_RS20565at 751.530 kb on + strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.531 kb on - strand, within EX31_RS20565at 751.547 kb on + strand, within EX31_RS20565at 751.547 kb on + strand, within EX31_RS20565at 751.547 kb on + strand, within EX31_RS20565at 751.547 kb on + strand, within EX31_RS20565at 751.548 kb on - strand, within EX31_RS20565at 751.548 kb on - strand, within EX31_RS20565at 751.550 kb on + strand, within EX31_RS20565at 751.551 kb on - strand, within EX31_RS20565at 751.551 kb on - strand, within EX31_RS20565at 751.576 kb on + strand, within EX31_RS20565at 751.584 kb on + strandat 751.621 kb on - strandat 751.621 kb on - strandat 751.764 kb on + strand, within EX31_RS20570at 751.765 kb on - strand, within EX31_RS20570at 751.765 kb on - strand, within EX31_RS20570at 751.796 kb on - strand, within EX31_RS20570at 751.810 kb on + strand, within EX31_RS20570at 751.858 kb on + strand, within EX31_RS20570at 751.859 kb on - strand, within EX31_RS20570at 751.859 kb on - strand, within EX31_RS20570at 751.859 kb on - strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.860 kb on + strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.861 kb on - strand, within EX31_RS20570at 751.868 kb on - strand, within EX31_RS20570at 751.879 kb on - strand, within EX31_RS20570at 751.879 kb on - strand, within EX31_RS20570at 751.879 kb on - strand, within EX31_RS20570at 752.010 kb on + strand, within EX31_RS20570at 752.011 kb on - strand, within EX31_RS20570at 752.011 kb on - strand, within EX31_RS20570at 752.049 kb on + strand, within EX31_RS20570at 752.050 kb on - strand, within EX31_RS20570at 752.050 kb on - strand, within EX31_RS20570at 752.101 kb on + strand, within EX31_RS20570at 752.102 kb on - strand, within EX31_RS20570at 752.133 kb on + strand, within EX31_RS20570at 752.133 kb on + strand, within EX31_RS20570at 752.225 kb on - strand, within EX31_RS20570at 752.230 kb on + strand, within EX31_RS20570at 752.231 kb on - strand, within EX31_RS20570at 752.330 kb on + strandat 752.331 kb on - strandat 752.357 kb on + strandat 752.357 kb on + strandat 752.358 kb on - strandat 752.359 kb on + strandat 752.359 kb on + strandat 752.359 kb on + strandat 752.360 kb on - strandat 752.360 kb on - strandat 752.368 kb on + strandat 752.368 kb on + strandat 752.368 kb on + strandat 752.369 kb on - strandat 752.369 kb on - strandat 752.373 kb on - strandat 752.429 kb on + strandat 752.430 kb on - strandat 752.460 kb on + strandat 752.460 kb on + strandat 752.481 kb on + strandat 752.481 kb on + strandat 752.481 kb on + strandat 752.481 kb on + strandat 752.482 kb on - strandat 752.482 kb on - strandat 752.482 kb on - strandat 752.494 kb on + strandat 752.525 kb on + strandat 752.525 kb on + strandat 752.642 kb on + strandat 752.730 kb on + strand, within EX31_RS20575at 752.730 kb on + strand, within EX31_RS20575at 752.731 kb on - strand, within EX31_RS20575at 752.731 kb on - strand, within EX31_RS20575at 752.786 kb on - strand, within EX31_RS20575at 752.786 kb on - strand, within EX31_RS20575at 752.804 kb on + strand, within EX31_RS20575at 752.805 kb on - strand, within EX31_RS20575at 752.805 kb on - strand, within EX31_RS20575at 752.844 kb on - strand, within EX31_RS20575at 752.942 kb on - strand, within EX31_RS20575at 752.942 kb on - strand, within EX31_RS20575at 752.997 kb on + strand, within EX31_RS20575at 752.997 kb on + strand, within EX31_RS20575at 752.997 kb on + strand, within EX31_RS20575at 752.997 kb on + strand, within EX31_RS20575at 752.997 kb on + strand, within EX31_RS20575at 752.998 kb on - strand, within EX31_RS20575at 753.031 kb on + strand, within EX31_RS20575at 753.101 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.169 kb on + strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.170 kb on - strand, within EX31_RS20575at 753.173 kb on + strand, within EX31_RS20575at 753.173 kb on + strand, within EX31_RS20575at 753.173 kb on + strand, within EX31_RS20575at 753.173 kb on + strand, within EX31_RS20575at 753.173 kb on + strand, within EX31_RS20575at 753.174 kb on - strand, within EX31_RS20575at 753.174 kb on - strand, within EX31_RS20575at 753.192 kb on + strand, within EX31_RS20575at 753.193 kb on - strand, within EX31_RS20575at 753.193 kb on - strand, within EX31_RS20575at 753.193 kb on - strand, within EX31_RS20575at 753.193 kb on - strand, within EX31_RS20575at 753.230 kb on - strand, within EX31_RS20575at 753.232 kb on + strand, within EX31_RS20575at 753.233 kb on - strand, within EX31_RS20575at 753.245 kb on + strand, within EX31_RS20575at 753.245 kb on + strand, within EX31_RS20575at 753.245 kb on + strand, within EX31_RS20575at 753.245 kb on + strand, within EX31_RS20575at 753.246 kb on - strand, within EX31_RS20575at 753.246 kb on - strand, within EX31_RS20575at 753.291 kb on + strand, within EX31_RS20575at 753.291 kb on + strand, within EX31_RS20575at 753.291 kb on + strand, within EX31_RS20575at 753.292 kb on - strand, within EX31_RS20575

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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750,816 + EX31_RS20565 0.15 -0.6
750,842 - EX31_RS20565 0.18 -0.0
750,842 - EX31_RS20565 0.18 +0.2
750,849 + EX31_RS20565 0.18 -0.4
750,849 + EX31_RS20565 0.18 -0.3
750,850 - EX31_RS20565 0.18 -0.1
750,850 - EX31_RS20565 0.18 +0.6
750,852 + EX31_RS20565 0.19 +0.3
750,852 + EX31_RS20565 0.19 -1.7
750,852 + EX31_RS20565 0.19 +0.7
750,852 + EX31_RS20565 0.19 -0.1
750,852 + EX31_RS20565 0.19 +1.1
750,853 - EX31_RS20565 0.19 +0.5
750,853 - EX31_RS20565 0.19 -0.5
750,853 - EX31_RS20565 0.19 -0.3
750,896 + EX31_RS20565 0.23 +1.7
750,897 - EX31_RS20565 0.23 +0.5
750,897 - EX31_RS20565 0.23 -0.6
750,922 + EX31_RS20565 0.25 +0.1
750,978 + EX31_RS20565 0.31 -0.1
750,978 + EX31_RS20565 0.31 -1.4
751,305 + EX31_RS20565 0.63 +0.2
751,305 + EX31_RS20565 0.63 +0.2
751,306 - EX31_RS20565 0.63 -0.7
751,306 - EX31_RS20565 0.63 +0.1
751,308 + EX31_RS20565 0.63 -1.1
751,308 + EX31_RS20565 0.63 -0.3
751,308 + EX31_RS20565 0.63 +0.1
751,308 + EX31_RS20565 0.63 +0.5
751,309 - EX31_RS20565 0.63 +0.8
751,309 - EX31_RS20565 0.63 -0.0
751,309 - EX31_RS20565 0.63 +0.6
751,309 - EX31_RS20565 0.63 +1.1
751,391 - EX31_RS20565 0.71 -1.2
751,391 - EX31_RS20565 0.71 +0.7
751,391 - EX31_RS20565 0.71 -0.3
751,391 - EX31_RS20565 0.71 -0.4
751,391 - EX31_RS20565 0.71 -0.0
751,454 + EX31_RS20565 0.78 +1.0
751,455 - EX31_RS20565 0.78 -0.1
751,473 - EX31_RS20565 0.79 +0.1
751,530 + EX31_RS20565 0.85 +1.4
751,530 + EX31_RS20565 0.85 +0.9
751,530 + EX31_RS20565 0.85 -0.2
751,530 + EX31_RS20565 0.85 +0.4
751,531 - EX31_RS20565 0.85 +0.1
751,531 - EX31_RS20565 0.85 +0.7
751,531 - EX31_RS20565 0.85 -0.3
751,531 - EX31_RS20565 0.85 -1.2
751,531 - EX31_RS20565 0.85 -0.6
751,531 - EX31_RS20565 0.85 -0.2
751,547 + EX31_RS20565 0.87 -0.3
751,547 + EX31_RS20565 0.87 -0.1
751,547 + EX31_RS20565 0.87 +0.7
751,547 + EX31_RS20565 0.87 -0.7
751,548 - EX31_RS20565 0.87 -0.3
751,548 - EX31_RS20565 0.87 +0.6
751,550 + EX31_RS20565 0.87 -0.2
751,551 - EX31_RS20565 0.87 +0.5
751,551 - EX31_RS20565 0.87 +0.8
751,576 + EX31_RS20565 0.90 -0.1
751,584 + +0.0
751,621 - +0.5
751,621 - -0.3
751,764 + EX31_RS20570 0.14 -0.0
751,765 - EX31_RS20570 0.14 -0.4
751,765 - EX31_RS20570 0.14 -0.7
751,796 - EX31_RS20570 0.18 +0.3
751,810 + EX31_RS20570 0.20 -0.5
751,858 + EX31_RS20570 0.28 -0.6
751,859 - EX31_RS20570 0.28 -0.6
751,859 - EX31_RS20570 0.28 +0.1
751,859 - EX31_RS20570 0.28 +1.4
751,860 + EX31_RS20570 0.28 +0.0
751,860 + EX31_RS20570 0.28 +0.1
751,860 + EX31_RS20570 0.28 -0.1
751,860 + EX31_RS20570 0.28 -1.0
751,860 + EX31_RS20570 0.28 -1.8
751,860 + EX31_RS20570 0.28 -0.1
751,860 + EX31_RS20570 0.28 -1.4
751,860 + EX31_RS20570 0.28 -0.7
751,861 - EX31_RS20570 0.28 +0.1
751,861 - EX31_RS20570 0.28 +0.2
751,861 - EX31_RS20570 0.28 -2.2
751,861 - EX31_RS20570 0.28 -0.2
751,861 - EX31_RS20570 0.28 +0.2
751,861 - EX31_RS20570 0.28 -0.0
751,868 - EX31_RS20570 0.29 -0.2
751,879 - EX31_RS20570 0.31 -0.3
751,879 - EX31_RS20570 0.31 -0.8
751,879 - EX31_RS20570 0.31 +0.1
752,010 + EX31_RS20570 0.50 +0.0
752,011 - EX31_RS20570 0.50 -0.3
752,011 - EX31_RS20570 0.50 -0.3
752,049 + EX31_RS20570 0.56 -0.5
752,050 - EX31_RS20570 0.56 -0.4
752,050 - EX31_RS20570 0.56 -2.2
752,101 + EX31_RS20570 0.64 +0.8
752,102 - EX31_RS20570 0.64 -0.0
752,133 + EX31_RS20570 0.68 -1.1
752,133 + EX31_RS20570 0.68 +1.2
752,225 - EX31_RS20570 0.82 -0.7
752,230 + EX31_RS20570 0.83 -0.5
752,231 - EX31_RS20570 0.83 +0.4
752,330 + +0.7
752,331 - +0.1
752,357 + -0.5
752,357 + +0.8
752,358 - -0.1
752,359 + +0.5
752,359 + -0.7
752,359 + -0.6
752,360 - +0.5
752,360 - -0.0
752,368 + -0.3
752,368 + -1.4
752,368 + -0.5
752,369 - -0.7
752,369 - +0.3
752,373 - +1.3
752,429 + +0.3
752,430 - -0.5
752,460 + -0.8
752,460 + +0.2
752,481 + -1.4
752,481 + +0.8
752,481 + +0.7
752,481 + +0.2
752,482 - +0.1
752,482 - -0.5
752,482 - -1.5
752,494 + -0.7
752,525 + +1.4
752,525 + -0.4
752,642 + +0.3
752,730 + EX31_RS20575 0.16 +1.1
752,730 + EX31_RS20575 0.16 +0.2
752,731 - EX31_RS20575 0.16 -2.0
752,731 - EX31_RS20575 0.16 +0.1
752,786 - EX31_RS20575 0.20 -1.0
752,786 - EX31_RS20575 0.20 -1.2
752,804 + EX31_RS20575 0.22 +0.6
752,805 - EX31_RS20575 0.22 -0.8
752,805 - EX31_RS20575 0.22 -0.0
752,844 - EX31_RS20575 0.25 -2.2
752,942 - EX31_RS20575 0.32 +0.2
752,942 - EX31_RS20575 0.32 -0.8
752,997 + EX31_RS20575 0.37 +0.3
752,997 + EX31_RS20575 0.37 +0.3
752,997 + EX31_RS20575 0.37 -0.1
752,997 + EX31_RS20575 0.37 +0.2
752,997 + EX31_RS20575 0.37 +0.2
752,998 - EX31_RS20575 0.37 -0.3
753,031 + EX31_RS20575 0.39 -0.4
753,101 + EX31_RS20575 0.45 +0.4
753,169 + EX31_RS20575 0.50 +0.2
753,169 + EX31_RS20575 0.50 -0.7
753,169 + EX31_RS20575 0.50 -0.4
753,169 + EX31_RS20575 0.50 -0.3
753,169 + EX31_RS20575 0.50 -0.6
753,169 + EX31_RS20575 0.50 -0.1
753,169 + EX31_RS20575 0.50 +0.2
753,170 - EX31_RS20575 0.50 -1.4
753,170 - EX31_RS20575 0.50 -0.6
753,170 - EX31_RS20575 0.50 -1.3
753,170 - EX31_RS20575 0.50 -0.8
753,170 - EX31_RS20575 0.50 -0.2
753,170 - EX31_RS20575 0.50 -0.3
753,173 + EX31_RS20575 0.51 -0.4
753,173 + EX31_RS20575 0.51 -0.2
753,173 + EX31_RS20575 0.51 +0.0
753,173 + EX31_RS20575 0.51 -0.7
753,173 + EX31_RS20575 0.51 +0.3
753,174 - EX31_RS20575 0.51 +1.0
753,174 - EX31_RS20575 0.51 -1.4
753,192 + EX31_RS20575 0.52 -0.0
753,193 - EX31_RS20575 0.52 +0.4
753,193 - EX31_RS20575 0.52 +0.0
753,193 - EX31_RS20575 0.52 +0.8
753,193 - EX31_RS20575 0.52 -0.4
753,230 - EX31_RS20575 0.55 +0.8
753,232 + EX31_RS20575 0.55 +0.7
753,233 - EX31_RS20575 0.55 -0.7
753,245 + EX31_RS20575 0.56 -0.1
753,245 + EX31_RS20575 0.56 +0.1
753,245 + EX31_RS20575 0.56 -0.8
753,245 + EX31_RS20575 0.56 -1.3
753,246 - EX31_RS20575 0.56 +0.1
753,246 - EX31_RS20575 0.56 -1.6
753,291 + EX31_RS20575 0.60 -0.0
753,291 + EX31_RS20575 0.60 +0.5
753,291 + EX31_RS20575 0.60 +0.0
753,292 - EX31_RS20575 0.60 -0.8

Or see this region's nucleotide sequence