Strain Fitness in Rahnella sp. WP5 around EX31_RS19135

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19130 and EX31_RS19135 are separated by 10 nucleotidesEX31_RS19135 and EX31_RS19140 overlap by 1 nucleotides EX31_RS19130: EX31_RS19130 - ABC transporter substrate-binding protein, at 419,192 to 420,997 _RS19130 EX31_RS19135: EX31_RS19135 - microcin C ABC transporter permease YejB, at 421,008 to 422,102 _RS19135 EX31_RS19140: EX31_RS19140 - ABC transporter permease subunit, at 422,102 to 423,145 _RS19140 Position (kb) 421 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 420.131 kb on - strand, within EX31_RS19130at 420.215 kb on + strand, within EX31_RS19130at 420.227 kb on + strand, within EX31_RS19130at 420.245 kb on + strand, within EX31_RS19130at 420.246 kb on - strand, within EX31_RS19130at 420.246 kb on - strand, within EX31_RS19130at 420.246 kb on - strand, within EX31_RS19130at 420.524 kb on + strand, within EX31_RS19130at 420.524 kb on + strand, within EX31_RS19130at 420.524 kb on + strand, within EX31_RS19130at 420.524 kb on + strand, within EX31_RS19130at 420.525 kb on - strand, within EX31_RS19130at 420.525 kb on - strand, within EX31_RS19130at 420.525 kb on - strand, within EX31_RS19130at 420.545 kb on - strand, within EX31_RS19130at 420.550 kb on - strand, within EX31_RS19130at 420.565 kb on + strand, within EX31_RS19130at 420.566 kb on - strand, within EX31_RS19130at 420.589 kb on + strand, within EX31_RS19130at 420.626 kb on + strand, within EX31_RS19130at 420.631 kb on + strand, within EX31_RS19130at 420.632 kb on - strand, within EX31_RS19130at 420.632 kb on - strand, within EX31_RS19130at 420.697 kb on + strand, within EX31_RS19130at 420.698 kb on - strand, within EX31_RS19130at 420.698 kb on - strand, within EX31_RS19130at 420.698 kb on - strand, within EX31_RS19130at 420.698 kb on - strand, within EX31_RS19130at 420.701 kb on + strand, within EX31_RS19130at 420.701 kb on + strand, within EX31_RS19130at 420.716 kb on + strand, within EX31_RS19130at 420.716 kb on + strand, within EX31_RS19130at 420.716 kb on + strand, within EX31_RS19130at 420.716 kb on + strand, within EX31_RS19130at 420.717 kb on - strand, within EX31_RS19130at 420.752 kb on - strand, within EX31_RS19130at 420.752 kb on - strand, within EX31_RS19130at 420.841 kb on + strandat 420.841 kb on + strandat 420.842 kb on - strandat 420.842 kb on - strandat 420.842 kb on - strandat 420.842 kb on - strandat 420.842 kb on - strandat 420.842 kb on - strandat 420.863 kb on + strandat 420.864 kb on - strandat 420.864 kb on - strandat 420.864 kb on - strandat 420.881 kb on + strandat 420.887 kb on + strandat 420.887 kb on + strandat 420.887 kb on + strandat 420.895 kb on + strandat 420.953 kb on + strandat 420.954 kb on - strandat 420.978 kb on + strandat 421.004 kb on + strandat 421.004 kb on + strandat 421.004 kb on + strandat 421.004 kb on + strandat 421.005 kb on - strandat 421.073 kb on + strandat 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.332 kb on + strand, within EX31_RS19135at 421.333 kb on - strand, within EX31_RS19135at 421.333 kb on - strand, within EX31_RS19135at 421.333 kb on - strand, within EX31_RS19135at 421.333 kb on - strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.336 kb on + strand, within EX31_RS19135at 421.337 kb on - strand, within EX31_RS19135at 421.337 kb on - strand, within EX31_RS19135at 421.442 kb on + strand, within EX31_RS19135at 421.443 kb on - strand, within EX31_RS19135at 421.443 kb on - strand, within EX31_RS19135at 421.443 kb on - strand, within EX31_RS19135at 421.446 kb on + strand, within EX31_RS19135at 421.447 kb on - strand, within EX31_RS19135at 421.447 kb on - strand, within EX31_RS19135at 421.567 kb on + strand, within EX31_RS19135at 421.567 kb on + strand, within EX31_RS19135at 421.596 kb on + strand, within EX31_RS19135at 421.596 kb on + strand, within EX31_RS19135at 421.596 kb on + strand, within EX31_RS19135at 421.667 kb on - strand, within EX31_RS19135at 421.674 kb on + strand, within EX31_RS19135at 421.675 kb on - strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.779 kb on + strand, within EX31_RS19135at 421.780 kb on - strand, within EX31_RS19135at 421.780 kb on - strand, within EX31_RS19135at 421.780 kb on - strand, within EX31_RS19135at 421.780 kb on - strand, within EX31_RS19135at 421.780 kb on - strand, within EX31_RS19135at 421.828 kb on - strand, within EX31_RS19135at 421.886 kb on + strand, within EX31_RS19135at 421.912 kb on + strand, within EX31_RS19135at 422.007 kb on + strandat 422.008 kb on - strandat 422.008 kb on - strandat 422.058 kb on + strandat 422.058 kb on + strandat 422.058 kb on + strandat 422.059 kb on - strandat 422.113 kb on + strandat 422.227 kb on - strand, within EX31_RS19140at 422.273 kb on + strand, within EX31_RS19140at 422.273 kb on + strand, within EX31_RS19140at 422.273 kb on + strand, within EX31_RS19140at 422.273 kb on + strand, within EX31_RS19140at 422.273 kb on + strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.274 kb on - strand, within EX31_RS19140at 422.294 kb on + strand, within EX31_RS19140at 422.295 kb on - strand, within EX31_RS19140at 422.411 kb on + strand, within EX31_RS19140at 422.412 kb on - strand, within EX31_RS19140at 422.412 kb on - strand, within EX31_RS19140at 422.412 kb on - strand, within EX31_RS19140at 422.412 kb on - strand, within EX31_RS19140at 422.519 kb on + strand, within EX31_RS19140at 422.606 kb on + strand, within EX31_RS19140at 422.606 kb on + strand, within EX31_RS19140at 422.606 kb on + strand, within EX31_RS19140at 422.607 kb on - strand, within EX31_RS19140at 422.609 kb on + strand, within EX31_RS19140at 422.684 kb on - strand, within EX31_RS19140at 422.686 kb on + strand, within EX31_RS19140at 422.687 kb on - strand, within EX31_RS19140at 422.739 kb on + strand, within EX31_RS19140at 422.739 kb on + strand, within EX31_RS19140at 422.740 kb on - strand, within EX31_RS19140at 422.740 kb on - strand, within EX31_RS19140at 422.807 kb on + strand, within EX31_RS19140at 422.807 kb on + strand, within EX31_RS19140at 422.807 kb on + strand, within EX31_RS19140at 422.808 kb on - strand, within EX31_RS19140at 422.848 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.863 kb on + strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.864 kb on - strand, within EX31_RS19140at 422.897 kb on + strand, within EX31_RS19140at 422.898 kb on - strand, within EX31_RS19140at 422.898 kb on - strand, within EX31_RS19140at 422.898 kb on - strand, within EX31_RS19140at 422.898 kb on - strand, within EX31_RS19140at 422.908 kb on + strand, within EX31_RS19140at 422.909 kb on - strand, within EX31_RS19140at 422.909 kb on - strand, within EX31_RS19140at 422.910 kb on + strand, within EX31_RS19140at 422.910 kb on + strand, within EX31_RS19140at 422.910 kb on + strand, within EX31_RS19140at 422.910 kb on + strand, within EX31_RS19140at 422.910 kb on + strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.911 kb on - strand, within EX31_RS19140at 422.913 kb on + strand, within EX31_RS19140at 422.913 kb on + strand, within EX31_RS19140at 422.913 kb on + strand, within EX31_RS19140at 422.913 kb on + strand, within EX31_RS19140at 422.914 kb on - strand, within EX31_RS19140at 422.914 kb on - strand, within EX31_RS19140at 422.914 kb on - strand, within EX31_RS19140at 422.914 kb on - strand, within EX31_RS19140at 422.914 kb on - strand, within EX31_RS19140at 422.990 kb on - strand, within EX31_RS19140at 423.013 kb on + strand, within EX31_RS19140at 423.014 kb on - strand, within EX31_RS19140

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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420,131 - EX31_RS19130 0.52 -1.2
420,215 + EX31_RS19130 0.57 +1.0
420,227 + EX31_RS19130 0.57 -2.0
420,245 + EX31_RS19130 0.58 +1.9
420,246 - EX31_RS19130 0.58 -0.6
420,246 - EX31_RS19130 0.58 -1.3
420,246 - EX31_RS19130 0.58 -0.8
420,524 + EX31_RS19130 0.74 +0.1
420,524 + EX31_RS19130 0.74 -0.0
420,524 + EX31_RS19130 0.74 +0.1
420,524 + EX31_RS19130 0.74 +0.1
420,525 - EX31_RS19130 0.74 -1.0
420,525 - EX31_RS19130 0.74 +0.9
420,525 - EX31_RS19130 0.74 +0.7
420,545 - EX31_RS19130 0.75 +1.1
420,550 - EX31_RS19130 0.75 +0.3
420,565 + EX31_RS19130 0.76 -0.8
420,566 - EX31_RS19130 0.76 -0.7
420,589 + EX31_RS19130 0.77 +0.3
420,626 + EX31_RS19130 0.79 -0.8
420,631 + EX31_RS19130 0.80 -0.9
420,632 - EX31_RS19130 0.80 +0.2
420,632 - EX31_RS19130 0.80 -0.5
420,697 + EX31_RS19130 0.83 +0.2
420,698 - EX31_RS19130 0.83 -0.0
420,698 - EX31_RS19130 0.83 -0.7
420,698 - EX31_RS19130 0.83 +0.2
420,698 - EX31_RS19130 0.83 +0.1
420,701 + EX31_RS19130 0.84 -0.4
420,701 + EX31_RS19130 0.84 -1.3
420,716 + EX31_RS19130 0.84 -0.1
420,716 + EX31_RS19130 0.84 +0.8
420,716 + EX31_RS19130 0.84 -0.3
420,716 + EX31_RS19130 0.84 -0.1
420,717 - EX31_RS19130 0.84 -0.0
420,752 - EX31_RS19130 0.86 -0.6
420,752 - EX31_RS19130 0.86 +0.2
420,841 + -3.5
420,841 + +0.3
420,842 - +0.1
420,842 - -1.1
420,842 - -1.2
420,842 - -0.1
420,842 - +0.6
420,842 - -0.1
420,863 + +0.3
420,864 - -1.5
420,864 - -1.7
420,864 - -0.7
420,881 + +0.2
420,887 + +0.3
420,887 + +0.6
420,887 + +0.2
420,895 + +0.0
420,953 + -0.2
420,954 - +0.7
420,978 + -0.4
421,004 + +1.1
421,004 + +1.0
421,004 + -0.2
421,004 + -0.7
421,005 - -0.1
421,073 + +0.2
421,332 + EX31_RS19135 0.30 -0.4
421,332 + EX31_RS19135 0.30 -0.8
421,332 + EX31_RS19135 0.30 -1.5
421,332 + EX31_RS19135 0.30 -0.5
421,332 + EX31_RS19135 0.30 +0.0
421,332 + EX31_RS19135 0.30 -1.0
421,332 + EX31_RS19135 0.30 +0.7
421,332 + EX31_RS19135 0.30 -0.1
421,332 + EX31_RS19135 0.30 -0.4
421,332 + EX31_RS19135 0.30 +0.1
421,332 + EX31_RS19135 0.30 -0.5
421,333 - EX31_RS19135 0.30 -0.2
421,333 - EX31_RS19135 0.30 -1.1
421,333 - EX31_RS19135 0.30 -0.2
421,333 - EX31_RS19135 0.30 -2.2
421,336 + EX31_RS19135 0.30 +0.4
421,336 + EX31_RS19135 0.30 -0.5
421,336 + EX31_RS19135 0.30 +0.7
421,336 + EX31_RS19135 0.30 +0.5
421,336 + EX31_RS19135 0.30 -0.0
421,336 + EX31_RS19135 0.30 -0.4
421,337 - EX31_RS19135 0.30 +0.2
421,337 - EX31_RS19135 0.30 -2.5
421,442 + EX31_RS19135 0.40 -1.0
421,443 - EX31_RS19135 0.40 +0.8
421,443 - EX31_RS19135 0.40 +0.1
421,443 - EX31_RS19135 0.40 -1.0
421,446 + EX31_RS19135 0.40 +1.8
421,447 - EX31_RS19135 0.40 +0.5
421,447 - EX31_RS19135 0.40 -0.1
421,567 + EX31_RS19135 0.51 +1.1
421,567 + EX31_RS19135 0.51 +1.4
421,596 + EX31_RS19135 0.54 +0.2
421,596 + EX31_RS19135 0.54 +0.1
421,596 + EX31_RS19135 0.54 +0.0
421,667 - EX31_RS19135 0.60 -0.4
421,674 + EX31_RS19135 0.61 -0.0
421,675 - EX31_RS19135 0.61 -0.4
421,779 + EX31_RS19135 0.70 -0.1
421,779 + EX31_RS19135 0.70 +0.2
421,779 + EX31_RS19135 0.70 +0.7
421,779 + EX31_RS19135 0.70 -0.0
421,779 + EX31_RS19135 0.70 +0.0
421,779 + EX31_RS19135 0.70 +0.5
421,779 + EX31_RS19135 0.70 -0.3
421,779 + EX31_RS19135 0.70 +0.2
421,779 + EX31_RS19135 0.70 +0.3
421,780 - EX31_RS19135 0.71 +0.3
421,780 - EX31_RS19135 0.71 +0.7
421,780 - EX31_RS19135 0.71 -0.8
421,780 - EX31_RS19135 0.71 -2.0
421,780 - EX31_RS19135 0.71 +0.7
421,828 - EX31_RS19135 0.75 +0.6
421,886 + EX31_RS19135 0.80 -0.1
421,912 + EX31_RS19135 0.83 -0.8
422,007 + -0.5
422,008 - -1.6
422,008 - +0.2
422,058 + -0.3
422,058 + +0.3
422,058 + +1.5
422,059 - -2.1
422,113 + +0.5
422,227 - EX31_RS19140 0.12 +0.3
422,273 + EX31_RS19140 0.16 -2.3
422,273 + EX31_RS19140 0.16 +0.5
422,273 + EX31_RS19140 0.16 +2.2
422,273 + EX31_RS19140 0.16 -0.4
422,273 + EX31_RS19140 0.16 -0.5
422,274 - EX31_RS19140 0.16 -0.1
422,274 - EX31_RS19140 0.16 -1.5
422,274 - EX31_RS19140 0.16 +0.9
422,274 - EX31_RS19140 0.16 -0.2
422,274 - EX31_RS19140 0.16 +0.0
422,274 - EX31_RS19140 0.16 +0.7
422,294 + EX31_RS19140 0.18 -2.2
422,295 - EX31_RS19140 0.18 +0.3
422,411 + EX31_RS19140 0.30 -0.8
422,412 - EX31_RS19140 0.30 +0.0
422,412 - EX31_RS19140 0.30 +0.7
422,412 - EX31_RS19140 0.30 +1.0
422,412 - EX31_RS19140 0.30 -1.7
422,519 + EX31_RS19140 0.40 +0.4
422,606 + EX31_RS19140 0.48 +0.5
422,606 + EX31_RS19140 0.48 +0.4
422,606 + EX31_RS19140 0.48 +0.8
422,607 - EX31_RS19140 0.48 -0.5
422,609 + EX31_RS19140 0.49 +0.2
422,684 - EX31_RS19140 0.56 -0.3
422,686 + EX31_RS19140 0.56 -0.2
422,687 - EX31_RS19140 0.56 -1.0
422,739 + EX31_RS19140 0.61 -0.4
422,739 + EX31_RS19140 0.61 +0.2
422,740 - EX31_RS19140 0.61 +0.1
422,740 - EX31_RS19140 0.61 -2.3
422,807 + EX31_RS19140 0.68 -1.1
422,807 + EX31_RS19140 0.68 -1.1
422,807 + EX31_RS19140 0.68 +1.0
422,808 - EX31_RS19140 0.68 +0.3
422,848 + EX31_RS19140 0.71 +0.0
422,863 + EX31_RS19140 0.73 +0.9
422,863 + EX31_RS19140 0.73 -0.5
422,863 + EX31_RS19140 0.73 -0.9
422,863 + EX31_RS19140 0.73 +1.0
422,863 + EX31_RS19140 0.73 +0.7
422,863 + EX31_RS19140 0.73 +1.3
422,863 + EX31_RS19140 0.73 +1.1
422,864 - EX31_RS19140 0.73 -0.7
422,864 - EX31_RS19140 0.73 +0.6
422,864 - EX31_RS19140 0.73 +0.6
422,864 - EX31_RS19140 0.73 +0.2
422,864 - EX31_RS19140 0.73 +0.4
422,864 - EX31_RS19140 0.73 +0.7
422,864 - EX31_RS19140 0.73 +0.3
422,864 - EX31_RS19140 0.73 +0.2
422,864 - EX31_RS19140 0.73 -0.7
422,864 - EX31_RS19140 0.73 -0.2
422,897 + EX31_RS19140 0.76 +1.2
422,898 - EX31_RS19140 0.76 -1.5
422,898 - EX31_RS19140 0.76 +0.0
422,898 - EX31_RS19140 0.76 +0.9
422,898 - EX31_RS19140 0.76 +0.4
422,908 + EX31_RS19140 0.77 -0.4
422,909 - EX31_RS19140 0.77 -0.4
422,909 - EX31_RS19140 0.77 +0.2
422,910 + EX31_RS19140 0.77 -1.1
422,910 + EX31_RS19140 0.77 +0.3
422,910 + EX31_RS19140 0.77 +0.7
422,910 + EX31_RS19140 0.77 -0.5
422,910 + EX31_RS19140 0.77 +0.4
422,911 - EX31_RS19140 0.77 -0.5
422,911 - EX31_RS19140 0.77 +0.3
422,911 - EX31_RS19140 0.77 -0.2
422,911 - EX31_RS19140 0.77 +0.9
422,911 - EX31_RS19140 0.77 -1.3
422,911 - EX31_RS19140 0.77 -0.4
422,913 + EX31_RS19140 0.78 +0.6
422,913 + EX31_RS19140 0.78 +0.4
422,913 + EX31_RS19140 0.78 +0.6
422,913 + EX31_RS19140 0.78 -0.2
422,914 - EX31_RS19140 0.78 +0.3
422,914 - EX31_RS19140 0.78 -0.5
422,914 - EX31_RS19140 0.78 +0.3
422,914 - EX31_RS19140 0.78 +0.1
422,914 - EX31_RS19140 0.78 +0.5
422,990 - EX31_RS19140 0.85 -0.3
423,013 + EX31_RS19140 0.87 +0.2
423,014 - EX31_RS19140 0.87 +0.4

Or see this region's nucleotide sequence