Strain Fitness in Rahnella sp. WP5 around EX31_RS12610

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12605 and EX31_RS12610 are separated by 95 nucleotidesEX31_RS12610 and EX31_RS12615 are separated by 598 nucleotides EX31_RS12605: EX31_RS12605 - type II secretion system protein, at 192,233 to 193,900 _RS12605 EX31_RS12610: EX31_RS12610 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 193,996 to 194,694 _RS12610 EX31_RS12615: EX31_RS12615 - pirin family protein, at 195,293 to 195,997 _RS12615 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1at 193.072 kb on + strand, within EX31_RS12605at 193.084 kb on + strand, within EX31_RS12605at 193.084 kb on + strand, within EX31_RS12605at 193.085 kb on - strand, within EX31_RS12605at 193.095 kb on + strand, within EX31_RS12605at 193.095 kb on + strand, within EX31_RS12605at 193.096 kb on - strand, within EX31_RS12605at 193.120 kb on + strand, within EX31_RS12605at 193.120 kb on + strand, within EX31_RS12605at 193.120 kb on + strand, within EX31_RS12605at 193.120 kb on + strand, within EX31_RS12605at 193.121 kb on - strand, within EX31_RS12605at 193.121 kb on - strand, within EX31_RS12605at 193.144 kb on + strand, within EX31_RS12605at 193.144 kb on + strand, within EX31_RS12605at 193.145 kb on - strand, within EX31_RS12605at 193.145 kb on - strand, within EX31_RS12605at 193.218 kb on + strand, within EX31_RS12605at 193.218 kb on + strand, within EX31_RS12605at 193.219 kb on - strand, within EX31_RS12605at 193.219 kb on - strand, within EX31_RS12605at 193.219 kb on - strand, within EX31_RS12605at 193.246 kb on - strand, within EX31_RS12605at 193.265 kb on - strand, within EX31_RS12605at 193.278 kb on + strand, within EX31_RS12605at 193.279 kb on - strand, within EX31_RS12605at 193.279 kb on - strand, within EX31_RS12605at 193.297 kb on + strand, within EX31_RS12605at 193.318 kb on + strand, within EX31_RS12605at 193.410 kb on + strand, within EX31_RS12605at 193.410 kb on + strand, within EX31_RS12605at 193.410 kb on + strand, within EX31_RS12605at 193.410 kb on + strand, within EX31_RS12605at 193.410 kb on + strand, within EX31_RS12605at 193.411 kb on - strand, within EX31_RS12605at 193.439 kb on - strand, within EX31_RS12605at 193.445 kb on + strand, within EX31_RS12605at 193.446 kb on - strand, within EX31_RS12605at 193.446 kb on - strand, within EX31_RS12605at 193.497 kb on + strand, within EX31_RS12605at 193.497 kb on + strand, within EX31_RS12605at 193.535 kb on - strand, within EX31_RS12605at 193.547 kb on - strand, within EX31_RS12605at 193.547 kb on - strand, within EX31_RS12605at 193.589 kb on - strand, within EX31_RS12605at 193.645 kb on + strand, within EX31_RS12605at 193.757 kb on + strandat 193.757 kb on + strandat 193.758 kb on - strandat 193.758 kb on - strandat 193.870 kb on + strandat 193.871 kb on - strandat 193.985 kb on + strandat 193.993 kb on + strandat 193.994 kb on - strandat 193.997 kb on + strandat 193.997 kb on + strandat 193.998 kb on - strandat 193.998 kb on - strandat 194.040 kb on + strandat 194.041 kb on - strandat 194.115 kb on + strand, within EX31_RS12610at 194.115 kb on + strand, within EX31_RS12610at 194.149 kb on + strand, within EX31_RS12610at 194.187 kb on - strand, within EX31_RS12610at 194.187 kb on - strand, within EX31_RS12610at 194.187 kb on - strand, within EX31_RS12610at 194.217 kb on + strand, within EX31_RS12610at 194.235 kb on + strand, within EX31_RS12610at 194.258 kb on + strand, within EX31_RS12610at 194.259 kb on - strand, within EX31_RS12610at 194.259 kb on - strand, within EX31_RS12610at 194.277 kb on + strand, within EX31_RS12610at 194.278 kb on - strand, within EX31_RS12610at 194.291 kb on + strand, within EX31_RS12610at 194.292 kb on - strand, within EX31_RS12610at 194.292 kb on - strand, within EX31_RS12610at 194.295 kb on + strand, within EX31_RS12610at 194.296 kb on - strand, within EX31_RS12610at 194.326 kb on + strand, within EX31_RS12610at 194.326 kb on + strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.327 kb on - strand, within EX31_RS12610at 194.328 kb on + strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.329 kb on - strand, within EX31_RS12610at 194.397 kb on + strand, within EX31_RS12610at 194.397 kb on + strand, within EX31_RS12610at 194.398 kb on - strand, within EX31_RS12610at 194.410 kb on - strand, within EX31_RS12610at 194.425 kb on - strand, within EX31_RS12610at 194.425 kb on - strand, within EX31_RS12610at 194.457 kb on - strand, within EX31_RS12610at 194.473 kb on - strand, within EX31_RS12610at 194.474 kb on + strand, within EX31_RS12610at 194.474 kb on + strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.475 kb on - strand, within EX31_RS12610at 194.506 kb on - strand, within EX31_RS12610at 194.508 kb on + strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.509 kb on - strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.566 kb on + strand, within EX31_RS12610at 194.567 kb on - strand, within EX31_RS12610at 194.618 kb on - strand, within EX31_RS12610at 194.999 kb on + strandat 194.999 kb on + strandat 195.001 kb on + strandat 195.001 kb on + strandat 195.002 kb on - strandat 195.003 kb on + strandat 195.003 kb on + strandat 195.003 kb on + strandat 195.004 kb on - strandat 195.004 kb on - strandat 195.004 kb on - strandat 195.183 kb on + strandat 195.215 kb on + strandat 195.215 kb on + strandat 195.311 kb on + strandat 195.311 kb on + strandat 195.311 kb on + strandat 195.312 kb on - strandat 195.312 kb on - strandat 195.315 kb on - strandat 195.332 kb on - strandat 195.390 kb on - strand, within EX31_RS12615at 195.390 kb on - strand, within EX31_RS12615at 195.399 kb on - strand, within EX31_RS12615at 195.454 kb on - strand, within EX31_RS12615

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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193,072 + EX31_RS12605 0.50 +0.1
193,084 + EX31_RS12605 0.51 -1.1
193,084 + EX31_RS12605 0.51 +0.2
193,085 - EX31_RS12605 0.51 -1.1
193,095 + EX31_RS12605 0.52 +0.2
193,095 + EX31_RS12605 0.52 +0.2
193,096 - EX31_RS12605 0.52 +0.7
193,120 + EX31_RS12605 0.53 -1.5
193,120 + EX31_RS12605 0.53 +0.6
193,120 + EX31_RS12605 0.53 -1.0
193,120 + EX31_RS12605 0.53 -0.6
193,121 - EX31_RS12605 0.53 +0.8
193,121 - EX31_RS12605 0.53 -0.1
193,144 + EX31_RS12605 0.55 -0.7
193,144 + EX31_RS12605 0.55 +0.1
193,145 - EX31_RS12605 0.55 -1.1
193,145 - EX31_RS12605 0.55 -0.1
193,218 + EX31_RS12605 0.59 +0.1
193,218 + EX31_RS12605 0.59 -0.6
193,219 - EX31_RS12605 0.59 +0.6
193,219 - EX31_RS12605 0.59 -1.4
193,219 - EX31_RS12605 0.59 +0.2
193,246 - EX31_RS12605 0.61 -1.1
193,265 - EX31_RS12605 0.62 -1.0
193,278 + EX31_RS12605 0.63 +0.2
193,279 - EX31_RS12605 0.63 -0.9
193,279 - EX31_RS12605 0.63 -0.2
193,297 + EX31_RS12605 0.64 -0.7
193,318 + EX31_RS12605 0.65 -0.0
193,410 + EX31_RS12605 0.71 +0.9
193,410 + EX31_RS12605 0.71 +0.2
193,410 + EX31_RS12605 0.71 -0.8
193,410 + EX31_RS12605 0.71 -0.1
193,410 + EX31_RS12605 0.71 -0.6
193,411 - EX31_RS12605 0.71 -0.2
193,439 - EX31_RS12605 0.72 -0.3
193,445 + EX31_RS12605 0.73 -0.4
193,446 - EX31_RS12605 0.73 -0.2
193,446 - EX31_RS12605 0.73 -0.4
193,497 + EX31_RS12605 0.76 -0.8
193,497 + EX31_RS12605 0.76 +0.2
193,535 - EX31_RS12605 0.78 +0.1
193,547 - EX31_RS12605 0.79 -0.2
193,547 - EX31_RS12605 0.79 -0.3
193,589 - EX31_RS12605 0.81 +0.6
193,645 + EX31_RS12605 0.85 -0.3
193,757 + -0.7
193,757 + -0.5
193,758 - +0.4
193,758 - -0.4
193,870 + +0.5
193,871 - -0.2
193,985 + -0.1
193,993 + -0.0
193,994 - -0.7
193,997 + -0.1
193,997 + +0.4
193,998 - +0.7
193,998 - +1.3
194,040 + -0.1
194,041 - -2.2
194,115 + EX31_RS12610 0.17 +0.3
194,115 + EX31_RS12610 0.17 -0.6
194,149 + EX31_RS12610 0.22 -0.3
194,187 - EX31_RS12610 0.27 -0.2
194,187 - EX31_RS12610 0.27 -0.0
194,187 - EX31_RS12610 0.27 -0.2
194,217 + EX31_RS12610 0.32 -0.8
194,235 + EX31_RS12610 0.34 +0.3
194,258 + EX31_RS12610 0.37 -1.0
194,259 - EX31_RS12610 0.38 -1.3
194,259 - EX31_RS12610 0.38 +0.6
194,277 + EX31_RS12610 0.40 -0.5
194,278 - EX31_RS12610 0.40 -0.0
194,291 + EX31_RS12610 0.42 +0.1
194,292 - EX31_RS12610 0.42 -1.1
194,292 - EX31_RS12610 0.42 -0.0
194,295 + EX31_RS12610 0.43 +0.2
194,296 - EX31_RS12610 0.43 +0.4
194,326 + EX31_RS12610 0.47 -0.7
194,326 + EX31_RS12610 0.47 -2.6
194,327 - EX31_RS12610 0.47 -0.9
194,327 - EX31_RS12610 0.47 -0.0
194,327 - EX31_RS12610 0.47 -0.1
194,327 - EX31_RS12610 0.47 -0.9
194,328 + EX31_RS12610 0.47 +0.1
194,329 - EX31_RS12610 0.48 -0.2
194,329 - EX31_RS12610 0.48 -0.3
194,329 - EX31_RS12610 0.48 +0.6
194,397 + EX31_RS12610 0.57 -1.4
194,397 + EX31_RS12610 0.57 -1.0
194,398 - EX31_RS12610 0.58 +1.3
194,410 - EX31_RS12610 0.59 +0.7
194,425 - EX31_RS12610 0.61 -0.6
194,425 - EX31_RS12610 0.61 -0.9
194,457 - EX31_RS12610 0.66 -0.2
194,473 - EX31_RS12610 0.68 +0.9
194,474 + EX31_RS12610 0.68 -1.6
194,474 + EX31_RS12610 0.68 -0.9
194,475 - EX31_RS12610 0.69 -2.0
194,475 - EX31_RS12610 0.69 +0.7
194,475 - EX31_RS12610 0.69 -0.3
194,475 - EX31_RS12610 0.69 -1.1
194,506 - EX31_RS12610 0.73 +0.5
194,508 + EX31_RS12610 0.73 -0.3
194,509 - EX31_RS12610 0.73 +0.1
194,509 - EX31_RS12610 0.73 -0.2
194,509 - EX31_RS12610 0.73 -1.1
194,509 - EX31_RS12610 0.73 +0.4
194,566 + EX31_RS12610 0.82 -0.4
194,566 + EX31_RS12610 0.82 +0.3
194,566 + EX31_RS12610 0.82 +0.9
194,567 - EX31_RS12610 0.82 -0.9
194,618 - EX31_RS12610 0.89 -0.8
194,999 + -0.3
194,999 + +0.6
195,001 + +0.1
195,001 + -0.6
195,002 - -0.8
195,003 + +0.0
195,003 + +0.5
195,003 + -0.1
195,004 - -1.3
195,004 - -0.0
195,004 - -0.4
195,183 + -0.6
195,215 + -0.6
195,215 + +0.2
195,311 + +0.1
195,311 + -0.7
195,311 + +0.3
195,312 - +0.1
195,312 - +0.5
195,315 - -0.4
195,332 - +0.7
195,390 - EX31_RS12615 0.14 +0.3
195,390 - EX31_RS12615 0.14 -1.3
195,399 - EX31_RS12615 0.15 -2.4
195,454 - EX31_RS12615 0.23 -2.2

Or see this region's nucleotide sequence