Strain Fitness in Rahnella sp. WP5 around EX31_RS10840

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10835 and EX31_RS10840 overlap by 1 nucleotidesEX31_RS10840 and EX31_RS10845 overlap by 4 nucleotides EX31_RS10835: EX31_RS10835 - TolC family protein, at 87,645 to 88,898 _RS10835 EX31_RS10840: EX31_RS10840 - efflux RND transporter periplasmic adaptor subunit, at 88,898 to 90,142 _RS10840 EX31_RS10845: EX31_RS10845 - efflux RND transporter permease subunit, at 90,139 to 93,270 _RS10845 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1at 87.948 kb on + strand, within EX31_RS10835at 87.949 kb on - strand, within EX31_RS10835at 87.949 kb on - strand, within EX31_RS10835at 88.106 kb on - strand, within EX31_RS10835at 88.386 kb on - strand, within EX31_RS10835at 88.497 kb on + strand, within EX31_RS10835at 88.497 kb on + strand, within EX31_RS10835at 88.562 kb on + strand, within EX31_RS10835at 88.709 kb on + strand, within EX31_RS10835at 88.709 kb on + strand, within EX31_RS10835at 88.872 kb on + strandat 89.033 kb on + strand, within EX31_RS10840at 89.040 kb on - strand, within EX31_RS10840at 89.093 kb on - strand, within EX31_RS10840at 89.228 kb on - strand, within EX31_RS10840at 89.234 kb on + strand, within EX31_RS10840at 89.396 kb on + strand, within EX31_RS10840at 89.396 kb on + strand, within EX31_RS10840at 89.549 kb on + strand, within EX31_RS10840at 89.550 kb on - strand, within EX31_RS10840at 89.551 kb on + strand, within EX31_RS10840at 89.551 kb on + strand, within EX31_RS10840at 89.552 kb on - strand, within EX31_RS10840at 89.552 kb on - strand, within EX31_RS10840at 89.552 kb on - strand, within EX31_RS10840at 89.692 kb on + strand, within EX31_RS10840at 89.834 kb on + strand, within EX31_RS10840at 89.834 kb on + strand, within EX31_RS10840at 89.921 kb on - strand, within EX31_RS10840at 90.413 kb on - strandat 90.413 kb on - strandat 90.413 kb on - strandat 90.418 kb on + strandat 90.418 kb on + strandat 90.418 kb on + strandat 90.418 kb on + strandat 90.419 kb on - strandat 90.556 kb on + strand, within EX31_RS10845at 90.556 kb on + strand, within EX31_RS10845at 90.557 kb on - strand, within EX31_RS10845at 90.563 kb on - strand, within EX31_RS10845at 90.635 kb on - strand, within EX31_RS10845at 90.697 kb on + strand, within EX31_RS10845at 90.697 kb on + strand, within EX31_RS10845at 90.823 kb on + strand, within EX31_RS10845at 90.824 kb on - strand, within EX31_RS10845at 90.824 kb on - strand, within EX31_RS10845at 91.058 kb on + strand, within EX31_RS10845at 91.108 kb on + strand, within EX31_RS10845

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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87,948 + EX31_RS10835 0.24 -0.8
87,949 - EX31_RS10835 0.24 -0.6
87,949 - EX31_RS10835 0.24 +1.0
88,106 - EX31_RS10835 0.37 -0.4
88,386 - EX31_RS10835 0.59 -0.1
88,497 + EX31_RS10835 0.68 +0.2
88,497 + EX31_RS10835 0.68 -0.9
88,562 + EX31_RS10835 0.73 +0.2
88,709 + EX31_RS10835 0.85 -1.7
88,709 + EX31_RS10835 0.85 -1.2
88,872 + -1.0
89,033 + EX31_RS10840 0.11 -1.1
89,040 - EX31_RS10840 0.11 -1.2
89,093 - EX31_RS10840 0.16 -0.5
89,228 - EX31_RS10840 0.27 -0.4
89,234 + EX31_RS10840 0.27 -0.2
89,396 + EX31_RS10840 0.40 -2.8
89,396 + EX31_RS10840 0.40 -0.1
89,549 + EX31_RS10840 0.52 +1.0
89,550 - EX31_RS10840 0.52 -0.5
89,551 + EX31_RS10840 0.52 -0.8
89,551 + EX31_RS10840 0.52 -0.4
89,552 - EX31_RS10840 0.53 -1.4
89,552 - EX31_RS10840 0.53 +0.1
89,552 - EX31_RS10840 0.53 -0.7
89,692 + EX31_RS10840 0.64 +0.1
89,834 + EX31_RS10840 0.75 -1.5
89,834 + EX31_RS10840 0.75 +0.6
89,921 - EX31_RS10840 0.82 +0.1
90,413 - +1.0
90,413 - +0.3
90,413 - +0.4
90,418 + -0.4
90,418 + -1.0
90,418 + +1.5
90,418 + -1.6
90,419 - -0.7
90,556 + EX31_RS10845 0.13 +1.1
90,556 + EX31_RS10845 0.13 -0.3
90,557 - EX31_RS10845 0.13 -0.8
90,563 - EX31_RS10845 0.14 -0.8
90,635 - EX31_RS10845 0.16 -1.0
90,697 + EX31_RS10845 0.18 -0.1
90,697 + EX31_RS10845 0.18 +0.2
90,823 + EX31_RS10845 0.22 -1.0
90,824 - EX31_RS10845 0.22 -0.9
90,824 - EX31_RS10845 0.22 +0.0
91,058 + EX31_RS10845 0.29 -0.0
91,108 + EX31_RS10845 0.31 +0.2

Or see this region's nucleotide sequence