Strain Fitness in Rahnella sp. WP5 around EX31_RS09800

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09795 and EX31_RS09800 overlap by 7 nucleotidesEX31_RS09800 and EX31_RS09805 are separated by 231 nucleotides EX31_RS09795: EX31_RS09795 - autoinducer 2 ABC transporter permease LsrC, at 164,485 to 165,561 _RS09795 EX31_RS09800: EX31_RS09800 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 165,555 to 167,117 _RS09800 EX31_RS09805: EX31_RS09805 - transcriptional regulator LsrR, at 167,349 to 168,323 _RS09805 Position (kb) 165 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 164.603 kb on + strand, within EX31_RS09795at 164.603 kb on + strand, within EX31_RS09795at 164.604 kb on - strand, within EX31_RS09795at 164.604 kb on - strand, within EX31_RS09795at 164.604 kb on - strand, within EX31_RS09795at 164.604 kb on - strand, within EX31_RS09795at 164.604 kb on - strand, within EX31_RS09795at 164.657 kb on - strand, within EX31_RS09795at 164.716 kb on + strand, within EX31_RS09795at 164.728 kb on + strand, within EX31_RS09795at 164.728 kb on + strand, within EX31_RS09795at 164.729 kb on - strand, within EX31_RS09795at 164.940 kb on + strand, within EX31_RS09795at 164.941 kb on - strand, within EX31_RS09795at 164.941 kb on - strand, within EX31_RS09795at 165.002 kb on + strand, within EX31_RS09795at 165.003 kb on - strand, within EX31_RS09795at 165.181 kb on + strand, within EX31_RS09795at 165.182 kb on - strand, within EX31_RS09795at 165.182 kb on - strand, within EX31_RS09795at 165.220 kb on - strand, within EX31_RS09795at 165.263 kb on - strand, within EX31_RS09795at 165.556 kb on + strandat 165.596 kb on + strandat 165.597 kb on - strandat 165.615 kb on - strandat 165.773 kb on - strand, within EX31_RS09800at 165.893 kb on + strand, within EX31_RS09800at 166.042 kb on + strand, within EX31_RS09800at 166.075 kb on + strand, within EX31_RS09800at 166.101 kb on + strand, within EX31_RS09800at 166.102 kb on - strand, within EX31_RS09800at 166.256 kb on + strand, within EX31_RS09800at 166.257 kb on - strand, within EX31_RS09800at 166.257 kb on - strand, within EX31_RS09800at 166.263 kb on - strand, within EX31_RS09800at 166.263 kb on - strand, within EX31_RS09800at 166.263 kb on - strand, within EX31_RS09800at 166.287 kb on + strand, within EX31_RS09800at 166.336 kb on - strand, within EX31_RS09800at 166.491 kb on + strand, within EX31_RS09800at 166.492 kb on - strand, within EX31_RS09800at 166.518 kb on + strand, within EX31_RS09800at 166.518 kb on + strand, within EX31_RS09800at 166.560 kb on - strand, within EX31_RS09800at 166.705 kb on - strand, within EX31_RS09800at 166.896 kb on + strand, within EX31_RS09800at 166.941 kb on + strand, within EX31_RS09800at 166.942 kb on - strand, within EX31_RS09800at 167.045 kb on + strandat 167.046 kb on - strandat 167.046 kb on - strandat 167.098 kb on - strandat 167.098 kb on - strandat 167.238 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.240 kb on + strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.241 kb on - strandat 167.250 kb on + strandat 167.348 kb on + strandat 167.439 kb on + strandat 167.439 kb on + strandat 167.439 kb on + strandat 167.442 kb on + strandat 167.555 kb on + strand, within EX31_RS09805at 167.555 kb on + strand, within EX31_RS09805at 167.556 kb on - strand, within EX31_RS09805at 167.753 kb on + strand, within EX31_RS09805at 167.753 kb on + strand, within EX31_RS09805at 167.754 kb on - strand, within EX31_RS09805at 167.829 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.831 kb on + strand, within EX31_RS09805at 167.832 kb on - strand, within EX31_RS09805at 167.876 kb on + strand, within EX31_RS09805at 167.936 kb on + strand, within EX31_RS09805at 167.936 kb on + strand, within EX31_RS09805at 167.937 kb on - strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.941 kb on + strand, within EX31_RS09805at 167.976 kb on - strand, within EX31_RS09805at 168.039 kb on + strand, within EX31_RS09805

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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164,603 + EX31_RS09795 0.11 -1.2
164,603 + EX31_RS09795 0.11 -0.1
164,604 - EX31_RS09795 0.11 +0.0
164,604 - EX31_RS09795 0.11 -0.8
164,604 - EX31_RS09795 0.11 -0.5
164,604 - EX31_RS09795 0.11 -0.9
164,604 - EX31_RS09795 0.11 -1.9
164,657 - EX31_RS09795 0.16 +0.2
164,716 + EX31_RS09795 0.21 -1.7
164,728 + EX31_RS09795 0.23 +0.4
164,728 + EX31_RS09795 0.23 +0.3
164,729 - EX31_RS09795 0.23 -1.2
164,940 + EX31_RS09795 0.42 -0.3
164,941 - EX31_RS09795 0.42 +0.2
164,941 - EX31_RS09795 0.42 +1.0
165,002 + EX31_RS09795 0.48 -0.1
165,003 - EX31_RS09795 0.48 -1.0
165,181 + EX31_RS09795 0.65 -1.1
165,182 - EX31_RS09795 0.65 -0.7
165,182 - EX31_RS09795 0.65 +0.9
165,220 - EX31_RS09795 0.68 -0.8
165,263 - EX31_RS09795 0.72 -0.5
165,556 + +0.6
165,596 + +0.2
165,597 - -1.2
165,615 - -0.3
165,773 - EX31_RS09800 0.14 -0.1
165,893 + EX31_RS09800 0.22 +1.1
166,042 + EX31_RS09800 0.31 +1.0
166,075 + EX31_RS09800 0.33 -0.1
166,101 + EX31_RS09800 0.35 +0.1
166,102 - EX31_RS09800 0.35 +1.0
166,256 + EX31_RS09800 0.45 +0.8
166,257 - EX31_RS09800 0.45 +0.5
166,257 - EX31_RS09800 0.45 -0.2
166,263 - EX31_RS09800 0.45 +0.7
166,263 - EX31_RS09800 0.45 +0.7
166,263 - EX31_RS09800 0.45 -0.4
166,287 + EX31_RS09800 0.47 +0.4
166,336 - EX31_RS09800 0.50 +0.3
166,491 + EX31_RS09800 0.60 +1.2
166,492 - EX31_RS09800 0.60 -0.1
166,518 + EX31_RS09800 0.62 +0.3
166,518 + EX31_RS09800 0.62 +0.2
166,560 - EX31_RS09800 0.64 +0.9
166,705 - EX31_RS09800 0.74 +1.5
166,896 + EX31_RS09800 0.86 +0.7
166,941 + EX31_RS09800 0.89 +0.3
166,942 - EX31_RS09800 0.89 -1.6
167,045 + +0.3
167,046 - +1.1
167,046 - +1.4
167,098 - +0.7
167,098 - +0.1
167,238 + -0.3
167,240 + -1.3
167,240 + -0.6
167,240 + -1.3
167,240 + +0.0
167,240 + -0.6
167,240 + -1.0
167,240 + -1.1
167,240 + -0.8
167,240 + -0.5
167,240 + +0.8
167,240 + -1.5
167,240 + -0.3
167,240 + -1.3
167,241 - +0.2
167,241 - -0.4
167,241 - +0.3
167,241 - -1.1
167,241 - -0.2
167,241 - +0.9
167,241 - +0.2
167,241 - +0.2
167,241 - -0.9
167,241 - -0.5
167,241 - -0.2
167,241 - -1.7
167,250 + -1.2
167,348 + -0.1
167,439 + -0.2
167,439 + -0.2
167,439 + +1.2
167,442 + +0.3
167,555 + EX31_RS09805 0.21 +0.1
167,555 + EX31_RS09805 0.21 +0.0
167,556 - EX31_RS09805 0.21 -0.6
167,753 + EX31_RS09805 0.41 +0.6
167,753 + EX31_RS09805 0.41 +0.5
167,754 - EX31_RS09805 0.42 -0.7
167,829 + EX31_RS09805 0.49 -1.1
167,831 + EX31_RS09805 0.49 +0.6
167,831 + EX31_RS09805 0.49 -0.7
167,831 + EX31_RS09805 0.49 +1.5
167,832 - EX31_RS09805 0.50 -0.2
167,876 + EX31_RS09805 0.54 +0.3
167,936 + EX31_RS09805 0.60 +0.9
167,936 + EX31_RS09805 0.60 +0.1
167,937 - EX31_RS09805 0.60 -0.5
167,941 + EX31_RS09805 0.61 -0.3
167,941 + EX31_RS09805 0.61 -0.1
167,941 + EX31_RS09805 0.61 +0.0
167,941 + EX31_RS09805 0.61 -1.2
167,941 + EX31_RS09805 0.61 -0.4
167,941 + EX31_RS09805 0.61 +0.3
167,976 - EX31_RS09805 0.64 +0.1
168,039 + EX31_RS09805 0.71 -0.1

Or see this region's nucleotide sequence