Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09345 and EX31_RS09350 are separated by 142 nucleotides EX31_RS09350 and EX31_RS09355 overlap by 8 nucleotides EX31_RS09355 and EX31_RS09360 overlap by 11 nucleotides
EX31_RS09345: EX31_RS09345 - ABC transporter substrate-binding protein, at 72,142 to 73,719
_RS09345
EX31_RS09350: EX31_RS09350 - ATP-binding cassette domain-containing protein, at 73,862 to 74,539
_RS09350
EX31_RS09355: EX31_RS09355 - ABC transporter ATP-binding protein, at 74,532 to 75,416
_RS09355
EX31_RS09360: EX31_RS09360 - ABC transporter permease, at 75,406 to 76,284
_RS09360
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.870 kb on - strand, within EX31_RS09345 at 72.904 kb on + strand, within EX31_RS09345 at 72.904 kb on + strand, within EX31_RS09345 at 72.904 kb on + strand, within EX31_RS09345 at 72.905 kb on - strand, within EX31_RS09345 at 72.905 kb on - strand, within EX31_RS09345 at 72.905 kb on - strand, within EX31_RS09345 at 72.953 kb on + strand, within EX31_RS09345 at 72.954 kb on - strand, within EX31_RS09345 at 72.976 kb on - strand, within EX31_RS09345 at 72.976 kb on - strand, within EX31_RS09345 at 72.979 kb on + strand, within EX31_RS09345 at 72.980 kb on - strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.094 kb on + strand, within EX31_RS09345 at 73.095 kb on - strand, within EX31_RS09345 at 73.095 kb on - strand, within EX31_RS09345 at 73.095 kb on - strand, within EX31_RS09345 at 73.095 kb on - strand, within EX31_RS09345 at 73.095 kb on - strand, within EX31_RS09345 at 73.341 kb on + strand, within EX31_RS09345 at 73.342 kb on - strand, within EX31_RS09345 at 73.386 kb on - strand, within EX31_RS09345 at 73.440 kb on + strand, within EX31_RS09345 at 73.548 kb on - strand, within EX31_RS09345 at 73.611 kb on + strand at 73.694 kb on - strand at 73.694 kb on - strand at 73.711 kb on + strand at 73.712 kb on - strand at 73.864 kb on - strand at 73.864 kb on - strand at 73.864 kb on - strand at 73.875 kb on + strand at 73.875 kb on + strand at 73.909 kb on + strand at 73.909 kb on + strand at 73.910 kb on - strand at 73.910 kb on - strand at 73.910 kb on - strand at 73.910 kb on - strand at 74.003 kb on + strand, within EX31_RS09350 at 74.004 kb on - strand, within EX31_RS09350 at 74.011 kb on + strand, within EX31_RS09350 at 74.461 kb on + strand, within EX31_RS09350 at 74.461 kb on + strand, within EX31_RS09350 at 74.461 kb on + strand, within EX31_RS09350 at 74.462 kb on - strand, within EX31_RS09350 at 74.462 kb on - strand, within EX31_RS09350 at 74.462 kb on - strand, within EX31_RS09350 at 74.636 kb on + strand, within EX31_RS09355 at 74.637 kb on - strand, within EX31_RS09355 at 74.642 kb on + strand, within EX31_RS09355 at 74.642 kb on + strand, within EX31_RS09355 at 74.642 kb on + strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.643 kb on - strand, within EX31_RS09355 at 74.645 kb on - strand, within EX31_RS09355 at 74.704 kb on + strand, within EX31_RS09355 at 74.704 kb on + strand, within EX31_RS09355 at 74.704 kb on + strand, within EX31_RS09355 at 74.704 kb on + strand, within EX31_RS09355 at 74.704 kb on + strand, within EX31_RS09355 at 74.705 kb on - strand, within EX31_RS09355 at 74.705 kb on - strand, within EX31_RS09355 at 74.705 kb on - strand, within EX31_RS09355 at 74.705 kb on - strand, within EX31_RS09355 at 74.774 kb on + strand, within EX31_RS09355 at 75.346 kb on + strand at 75.347 kb on - strand at 75.347 kb on - strand at 75.357 kb on - strand at 75.357 kb on - strand at 75.395 kb on + strand at 75.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 72,870 - EX31_RS09345 0.46 +0.4 72,904 + EX31_RS09345 0.48 +0.1 72,904 + EX31_RS09345 0.48 -2.0 72,904 + EX31_RS09345 0.48 +0.8 72,905 - EX31_RS09345 0.48 -0.7 72,905 - EX31_RS09345 0.48 +0.2 72,905 - EX31_RS09345 0.48 +1.0 72,953 + EX31_RS09345 0.51 -1.4 72,954 - EX31_RS09345 0.51 -1.4 72,976 - EX31_RS09345 0.53 -1.2 72,976 - EX31_RS09345 0.53 +0.8 72,979 + EX31_RS09345 0.53 -0.7 72,980 - EX31_RS09345 0.53 -0.4 73,094 + EX31_RS09345 0.60 -1.0 73,094 + EX31_RS09345 0.60 +0.3 73,094 + EX31_RS09345 0.60 -0.4 73,094 + EX31_RS09345 0.60 +1.3 73,094 + EX31_RS09345 0.60 +0.7 73,094 + EX31_RS09345 0.60 -0.3 73,094 + EX31_RS09345 0.60 -0.9 73,094 + EX31_RS09345 0.60 -1.1 73,094 + EX31_RS09345 0.60 -2.2 73,095 - EX31_RS09345 0.60 +0.3 73,095 - EX31_RS09345 0.60 +0.3 73,095 - EX31_RS09345 0.60 -1.3 73,095 - EX31_RS09345 0.60 -1.0 73,095 - EX31_RS09345 0.60 -0.0 73,341 + EX31_RS09345 0.76 +0.3 73,342 - EX31_RS09345 0.76 +0.5 73,386 - EX31_RS09345 0.79 -1.3 73,440 + EX31_RS09345 0.82 +0.7 73,548 - EX31_RS09345 0.89 -2.5 73,611 + +0.4 73,694 - -1.5 73,694 - -0.1 73,711 + -0.6 73,712 - +0.8 73,864 - -0.0 73,864 - -0.7 73,864 - +2.2 73,875 + +0.7 73,875 + -2.6 73,909 + +0.9 73,909 + -0.2 73,910 - +0.1 73,910 - +0.9 73,910 - +0.4 73,910 - -1.1 74,003 + EX31_RS09350 0.21 -0.0 74,004 - EX31_RS09350 0.21 -0.8 74,011 + EX31_RS09350 0.22 -0.6 74,461 + EX31_RS09350 0.88 -1.3 74,461 + EX31_RS09350 0.88 -0.2 74,461 + EX31_RS09350 0.88 -1.5 74,462 - EX31_RS09350 0.88 -0.6 74,462 - EX31_RS09350 0.88 -0.9 74,462 - EX31_RS09350 0.88 +0.6 74,636 + EX31_RS09355 0.12 -0.4 74,637 - EX31_RS09355 0.12 -1.4 74,642 + EX31_RS09355 0.12 -1.5 74,642 + EX31_RS09355 0.12 +0.7 74,642 + EX31_RS09355 0.12 -0.3 74,643 - EX31_RS09355 0.13 -2.2 74,643 - EX31_RS09355 0.13 +0.1 74,643 - EX31_RS09355 0.13 +0.6 74,643 - EX31_RS09355 0.13 -0.5 74,643 - EX31_RS09355 0.13 -0.0 74,643 - EX31_RS09355 0.13 +0.7 74,645 - EX31_RS09355 0.13 -1.1 74,704 + EX31_RS09355 0.19 -0.9 74,704 + EX31_RS09355 0.19 -0.7 74,704 + EX31_RS09355 0.19 -0.8 74,704 + EX31_RS09355 0.19 -1.9 74,704 + EX31_RS09355 0.19 +0.6 74,705 - EX31_RS09355 0.20 -0.7 74,705 - EX31_RS09355 0.20 -0.8 74,705 - EX31_RS09355 0.20 +1.2 74,705 - EX31_RS09355 0.20 -1.1 74,774 + EX31_RS09355 0.27 +0.4 75,346 + -1.2 75,347 - -1.5 75,347 - -0.6 75,357 - -0.9 75,357 - -0.9 75,395 + -0.6 75,396 - +1.1
Or see this region's nucleotide sequence