Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08375 and EX31_RS08380 are separated by 344 nucleotides EX31_RS08380 and EX31_RS08385 are separated by 152 nucleotides
EX31_RS08375: EX31_RS08375 - magnesium-translocating P-type ATPase, at 179,075 to 181,777
_RS08375
EX31_RS08380: EX31_RS08380 - HTH-type transcriptional regulator TreR, at 182,122 to 183,078
_RS08380
EX31_RS08385: EX31_RS08385 - PTS trehalose transporter subunit IIBC, at 183,231 to 184,649
_RS08385
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.187 kb on - strand, within EX31_RS08375 at 181.187 kb on - strand, within EX31_RS08375 at 181.366 kb on + strand, within EX31_RS08375 at 181.366 kb on + strand, within EX31_RS08375 at 181.367 kb on - strand, within EX31_RS08375 at 181.372 kb on + strand, within EX31_RS08375 at 181.372 kb on + strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.422 kb on + strand, within EX31_RS08375 at 181.423 kb on - strand, within EX31_RS08375 at 181.423 kb on - strand, within EX31_RS08375 at 181.600 kb on - strand at 181.600 kb on - strand at 181.649 kb on - strand at 181.682 kb on + strand at 181.682 kb on + strand at 181.682 kb on + strand at 181.683 kb on - strand at 181.712 kb on + strand at 181.729 kb on + strand at 181.730 kb on - strand at 181.834 kb on - strand at 182.008 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.068 kb on - strand at 182.068 kb on - strand at 182.069 kb on + strand at 182.070 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.083 kb on - strand at 182.154 kb on + strand at 182.155 kb on - strand at 182.155 kb on - strand at 182.155 kb on - strand at 182.370 kb on - strand, within EX31_RS08380 at 182.370 kb on - strand, within EX31_RS08380 at 182.392 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.481 kb on + strand, within EX31_RS08380 at 182.582 kb on + strand, within EX31_RS08380 at 182.596 kb on + strand, within EX31_RS08380 at 182.667 kb on + strand, within EX31_RS08380 at 182.733 kb on + strand, within EX31_RS08380 at 182.780 kb on - strand, within EX31_RS08380 at 182.780 kb on - strand, within EX31_RS08380 at 182.780 kb on - strand, within EX31_RS08380 at 182.780 kb on - strand, within EX31_RS08380 at 182.780 kb on - strand, within EX31_RS08380 at 182.875 kb on + strand, within EX31_RS08380 at 182.910 kb on - strand, within EX31_RS08380 at 182.959 kb on + strand, within EX31_RS08380 at 182.966 kb on + strand, within EX31_RS08380 at 183.054 kb on + strand at 183.054 kb on + strand at 183.054 kb on + strand at 183.181 kb on - strand at 183.181 kb on - strand at 183.194 kb on - strand at 183.194 kb on - strand at 183.198 kb on + strand at 183.198 kb on + strand at 183.198 kb on + strand at 183.199 kb on - strand at 183.199 kb on - strand at 183.199 kb on - strand at 183.199 kb on - strand at 183.199 kb on - strand at 183.207 kb on - strand at 183.242 kb on + strand at 183.242 kb on + strand at 183.243 kb on - strand at 183.243 kb on - strand at 183.243 kb on - strand at 183.293 kb on + strand at 183.293 kb on + strand at 183.294 kb on - strand at 183.318 kb on - strand at 183.318 kb on - strand at 183.318 kb on - strand at 183.450 kb on + strand, within EX31_RS08385 at 183.450 kb on + strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.451 kb on - strand, within EX31_RS08385 at 183.453 kb on + strand, within EX31_RS08385 at 183.453 kb on + strand, within EX31_RS08385 at 183.453 kb on + strand, within EX31_RS08385 at 183.453 kb on + strand, within EX31_RS08385 at 183.453 kb on + strand, within EX31_RS08385 at 183.527 kb on + strand, within EX31_RS08385 at 183.527 kb on + strand, within EX31_RS08385 at 183.607 kb on + strand, within EX31_RS08385 at 183.607 kb on + strand, within EX31_RS08385 at 183.696 kb on + strand, within EX31_RS08385 at 183.697 kb on - strand, within EX31_RS08385 at 183.697 kb on - strand, within EX31_RS08385 at 183.697 kb on - strand, within EX31_RS08385 at 183.731 kb on + strand, within EX31_RS08385 at 183.731 kb on + strand, within EX31_RS08385 at 183.732 kb on - strand, within EX31_RS08385 at 183.732 kb on - strand, within EX31_RS08385 at 183.732 kb on - strand, within EX31_RS08385 at 183.811 kb on + strand, within EX31_RS08385 at 183.811 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.843 kb on + strand, within EX31_RS08385 at 183.844 kb on - strand, within EX31_RS08385 at 183.844 kb on - strand, within EX31_RS08385 at 183.844 kb on - strand, within EX31_RS08385 at 183.872 kb on - strand, within EX31_RS08385 at 183.909 kb on + strand, within EX31_RS08385 at 183.989 kb on + strand, within EX31_RS08385 at 183.989 kb on + strand, within EX31_RS08385 at 183.989 kb on + strand, within EX31_RS08385 at 183.989 kb on + strand, within EX31_RS08385 at 183.989 kb on + strand, within EX31_RS08385 at 183.990 kb on - strand, within EX31_RS08385 at 183.990 kb on - strand, within EX31_RS08385 at 183.990 kb on - strand, within EX31_RS08385 at 183.990 kb on - strand, within EX31_RS08385 at 183.990 kb on - strand, within EX31_RS08385 at 183.993 kb on + strand, within EX31_RS08385 at 183.993 kb on + strand, within EX31_RS08385 at 183.993 kb on + strand, within EX31_RS08385 at 183.993 kb on + strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.994 kb on - strand, within EX31_RS08385 at 183.999 kb on + strand, within EX31_RS08385 at 184.000 kb on - strand, within EX31_RS08385 at 184.032 kb on - strand, within EX31_RS08385 at 184.052 kb on + strand, within EX31_RS08385 at 184.052 kb on + strand, within EX31_RS08385 at 184.052 kb on + strand, within EX31_RS08385 at 184.053 kb on - strand, within EX31_RS08385 at 184.053 kb on - strand, within EX31_RS08385
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 181,187 - EX31_RS08375 0.78 +0.6 181,187 - EX31_RS08375 0.78 -0.3 181,366 + EX31_RS08375 0.85 -1.0 181,366 + EX31_RS08375 0.85 -0.2 181,367 - EX31_RS08375 0.85 +0.1 181,372 + EX31_RS08375 0.85 -1.3 181,372 + EX31_RS08375 0.85 +1.0 181,373 - EX31_RS08375 0.85 -0.1 181,373 - EX31_RS08375 0.85 +0.8 181,373 - EX31_RS08375 0.85 +0.4 181,422 + EX31_RS08375 0.87 +0.4 181,423 - EX31_RS08375 0.87 -0.0 181,423 - EX31_RS08375 0.87 +0.6 181,600 - -1.3 181,600 - -0.1 181,649 - +0.5 181,682 + -0.9 181,682 + +0.1 181,682 + -0.0 181,683 - +0.5 181,712 + -1.0 181,729 + -1.3 181,730 - +0.1 181,834 - +0.9 182,008 + +0.6 182,044 + -0.3 182,044 + +0.1 182,044 + +0.3 182,044 + +0.3 182,044 + +0.0 182,044 + -2.2 182,044 + -0.9 182,044 + -0.4 182,045 - +0.1 182,045 - -0.5 182,045 - +0.1 182,045 - -0.1 182,045 - +0.3 182,045 - +0.4 182,045 - +0.4 182,045 - -0.0 182,045 - +0.4 182,045 - +0.1 182,045 - -0.1 182,045 - +0.2 182,067 + -0.2 182,067 + +0.4 182,067 + -0.4 182,067 + -0.9 182,067 + -0.8 182,068 - +0.8 182,068 - +0.3 182,069 + +0.2 182,070 - -0.4 182,078 + -0.7 182,078 + +0.9 182,078 + +0.6 182,082 + +0.4 182,082 + +0.2 182,082 + +0.3 182,082 + -2.1 182,083 - +0.1 182,154 + -0.1 182,155 - -1.0 182,155 - +0.9 182,155 - -0.5 182,370 - EX31_RS08380 0.26 +1.2 182,370 - EX31_RS08380 0.26 +0.7 182,392 + EX31_RS08380 0.28 +0.6 182,404 + EX31_RS08380 0.29 +1.5 182,404 + EX31_RS08380 0.29 +0.6 182,404 + EX31_RS08380 0.29 -0.8 182,404 + EX31_RS08380 0.29 +0.3 182,405 - EX31_RS08380 0.30 +0.3 182,405 - EX31_RS08380 0.30 +0.3 182,405 - EX31_RS08380 0.30 -0.1 182,405 - EX31_RS08380 0.30 -0.8 182,481 + EX31_RS08380 0.38 -0.1 182,582 + EX31_RS08380 0.48 -0.0 182,596 + EX31_RS08380 0.50 -0.5 182,667 + EX31_RS08380 0.57 -0.0 182,733 + EX31_RS08380 0.64 -0.2 182,780 - EX31_RS08380 0.69 +0.8 182,780 - EX31_RS08380 0.69 +1.1 182,780 - EX31_RS08380 0.69 -0.3 182,780 - EX31_RS08380 0.69 +0.2 182,780 - EX31_RS08380 0.69 +0.1 182,875 + EX31_RS08380 0.79 +0.5 182,910 - EX31_RS08380 0.82 +0.5 182,959 + EX31_RS08380 0.87 +0.2 182,966 + EX31_RS08380 0.88 +2.0 183,054 + +0.3 183,054 + -1.5 183,054 + -0.6 183,181 - -1.1 183,181 - +0.1 183,194 - +0.1 183,194 - +0.6 183,198 + +0.8 183,198 + +0.6 183,198 + -0.2 183,199 - -0.5 183,199 - +0.1 183,199 - +0.5 183,199 - +0.3 183,199 - -0.2 183,207 - -0.0 183,242 + -0.3 183,242 + +0.6 183,243 - -0.5 183,243 - +0.4 183,243 - -0.8 183,293 + -1.0 183,293 + -1.1 183,294 - -0.3 183,318 - -0.6 183,318 - -0.3 183,318 - -0.3 183,450 + EX31_RS08385 0.15 +0.6 183,450 + EX31_RS08385 0.15 -0.6 183,451 - EX31_RS08385 0.16 -0.4 183,451 - EX31_RS08385 0.16 +1.5 183,451 - EX31_RS08385 0.16 -0.1 183,451 - EX31_RS08385 0.16 -0.4 183,451 - EX31_RS08385 0.16 +0.6 183,451 - EX31_RS08385 0.16 +0.9 183,451 - EX31_RS08385 0.16 -0.3 183,453 + EX31_RS08385 0.16 -1.1 183,453 + EX31_RS08385 0.16 -0.3 183,453 + EX31_RS08385 0.16 +0.1 183,453 + EX31_RS08385 0.16 -1.4 183,453 + EX31_RS08385 0.16 -0.5 183,527 + EX31_RS08385 0.21 -0.3 183,527 + EX31_RS08385 0.21 -0.1 183,607 + EX31_RS08385 0.26 -0.8 183,607 + EX31_RS08385 0.26 +0.4 183,696 + EX31_RS08385 0.33 -0.6 183,697 - EX31_RS08385 0.33 +1.4 183,697 - EX31_RS08385 0.33 -0.9 183,697 - EX31_RS08385 0.33 +0.0 183,731 + EX31_RS08385 0.35 -1.0 183,731 + EX31_RS08385 0.35 +0.7 183,732 - EX31_RS08385 0.35 -0.0 183,732 - EX31_RS08385 0.35 -0.6 183,732 - EX31_RS08385 0.35 -0.3 183,811 + EX31_RS08385 0.41 -0.0 183,811 + EX31_RS08385 0.41 -0.3 183,843 + EX31_RS08385 0.43 -0.1 183,843 + EX31_RS08385 0.43 +0.6 183,843 + EX31_RS08385 0.43 +0.1 183,843 + EX31_RS08385 0.43 +0.3 183,843 + EX31_RS08385 0.43 +0.1 183,843 + EX31_RS08385 0.43 -0.1 183,843 + EX31_RS08385 0.43 -0.3 183,844 - EX31_RS08385 0.43 -0.6 183,844 - EX31_RS08385 0.43 +0.2 183,844 - EX31_RS08385 0.43 -0.2 183,872 - EX31_RS08385 0.45 -0.2 183,909 + EX31_RS08385 0.48 +0.1 183,989 + EX31_RS08385 0.53 -1.1 183,989 + EX31_RS08385 0.53 -0.3 183,989 + EX31_RS08385 0.53 -0.6 183,989 + EX31_RS08385 0.53 -0.3 183,989 + EX31_RS08385 0.53 -0.4 183,990 - EX31_RS08385 0.53 +0.5 183,990 - EX31_RS08385 0.53 -0.4 183,990 - EX31_RS08385 0.53 +0.3 183,990 - EX31_RS08385 0.53 -0.1 183,990 - EX31_RS08385 0.53 -0.4 183,993 + EX31_RS08385 0.54 -0.9 183,993 + EX31_RS08385 0.54 -0.0 183,993 + EX31_RS08385 0.54 +0.6 183,993 + EX31_RS08385 0.54 -0.7 183,994 - EX31_RS08385 0.54 +0.6 183,994 - EX31_RS08385 0.54 +0.6 183,994 - EX31_RS08385 0.54 -0.0 183,994 - EX31_RS08385 0.54 -0.5 183,994 - EX31_RS08385 0.54 +0.2 183,994 - EX31_RS08385 0.54 -0.7 183,994 - EX31_RS08385 0.54 -0.9 183,999 + EX31_RS08385 0.54 +0.4 184,000 - EX31_RS08385 0.54 -0.1 184,032 - EX31_RS08385 0.56 -0.9 184,052 + EX31_RS08385 0.58 +0.8 184,052 + EX31_RS08385 0.58 +2.6 184,052 + EX31_RS08385 0.58 -0.7 184,053 - EX31_RS08385 0.58 -0.3 184,053 - EX31_RS08385 0.58 +0.6
Or see this region's nucleotide sequence