Strain Fitness in Rahnella sp. WP5 around EX31_RS02925

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02920 and EX31_RS02925 are separated by 80 nucleotidesEX31_RS02925 and EX31_RS02930 are separated by 18 nucleotidesEX31_RS02930 and EX31_RS02935 are separated by 2 nucleotides EX31_RS02920: EX31_RS02920 - glycosyltransferase, at 61,839 to 62,996 _RS02920 EX31_RS02925: EX31_RS02925 - polysaccharide biosynthesis tyrosine autokinase, at 63,077 to 65,257 _RS02925 EX31_RS02930: EX31_RS02930 - protein-tyrosine-phosphatase, at 65,276 to 65,710 _RS02930 EX31_RS02935: EX31_RS02935 - polysaccharide export protein, at 65,713 to 66,846 _RS02935 Position (kb) 63 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1at 62.429 kb on - strand, within EX31_RS02920at 62.433 kb on - strand, within EX31_RS02920at 62.433 kb on - strand, within EX31_RS02920at 62.644 kb on - strand, within EX31_RS02920at 62.881 kb on - strandat 63.141 kb on + strandat 63.142 kb on - strandat 63.142 kb on - strandat 63.320 kb on - strand, within EX31_RS02925at 63.367 kb on + strand, within EX31_RS02925at 63.368 kb on - strand, within EX31_RS02925at 63.420 kb on - strand, within EX31_RS02925at 63.485 kb on + strand, within EX31_RS02925at 63.485 kb on + strand, within EX31_RS02925at 63.486 kb on - strand, within EX31_RS02925at 63.486 kb on - strand, within EX31_RS02925at 63.522 kb on + strand, within EX31_RS02925at 63.541 kb on + strand, within EX31_RS02925at 63.542 kb on - strand, within EX31_RS02925at 63.672 kb on - strand, within EX31_RS02925at 63.674 kb on - strand, within EX31_RS02925at 63.676 kb on + strand, within EX31_RS02925at 63.677 kb on - strand, within EX31_RS02925at 63.815 kb on + strand, within EX31_RS02925at 63.972 kb on - strand, within EX31_RS02925at 64.050 kb on - strand, within EX31_RS02925at 64.050 kb on - strand, within EX31_RS02925at 64.094 kb on + strand, within EX31_RS02925at 64.103 kb on - strand, within EX31_RS02925at 64.104 kb on + strand, within EX31_RS02925at 64.104 kb on + strand, within EX31_RS02925at 64.105 kb on - strand, within EX31_RS02925at 64.300 kb on + strand, within EX31_RS02925at 64.310 kb on - strand, within EX31_RS02925at 64.331 kb on + strand, within EX31_RS02925at 64.383 kb on + strand, within EX31_RS02925at 64.430 kb on - strand, within EX31_RS02925at 64.463 kb on - strand, within EX31_RS02925at 64.463 kb on - strand, within EX31_RS02925at 64.516 kb on + strand, within EX31_RS02925at 64.516 kb on + strand, within EX31_RS02925at 64.572 kb on - strand, within EX31_RS02925at 64.601 kb on + strand, within EX31_RS02925at 64.650 kb on + strand, within EX31_RS02925at 64.651 kb on - strand, within EX31_RS02925at 64.651 kb on - strand, within EX31_RS02925at 64.655 kb on - strand, within EX31_RS02925at 64.660 kb on + strand, within EX31_RS02925at 64.660 kb on + strand, within EX31_RS02925at 64.661 kb on - strand, within EX31_RS02925at 64.724 kb on + strand, within EX31_RS02925at 64.725 kb on - strand, within EX31_RS02925at 64.814 kb on - strand, within EX31_RS02925at 64.814 kb on - strand, within EX31_RS02925at 64.836 kb on + strand, within EX31_RS02925at 64.836 kb on + strand, within EX31_RS02925at 64.837 kb on - strand, within EX31_RS02925at 64.980 kb on - strand, within EX31_RS02925at 64.980 kb on - strand, within EX31_RS02925at 65.076 kb on - strandat 65.079 kb on - strandat 65.079 kb on - strandat 65.119 kb on - strandat 65.120 kb on + strandat 65.120 kb on + strandat 65.121 kb on - strandat 65.155 kb on + strandat 65.155 kb on + strandat 65.156 kb on - strandat 65.177 kb on + strandat 65.177 kb on + strandat 65.231 kb on - strandat 65.328 kb on + strand, within EX31_RS02930at 65.335 kb on - strand, within EX31_RS02930at 65.335 kb on - strand, within EX31_RS02930at 65.356 kb on + strand, within EX31_RS02930at 65.443 kb on + strand, within EX31_RS02930at 65.484 kb on + strand, within EX31_RS02930at 65.485 kb on - strand, within EX31_RS02930at 65.521 kb on + strand, within EX31_RS02930at 65.537 kb on + strand, within EX31_RS02930at 65.538 kb on - strand, within EX31_RS02930at 65.538 kb on - strand, within EX31_RS02930at 65.538 kb on - strand, within EX31_RS02930at 65.602 kb on + strand, within EX31_RS02930at 65.672 kb on + strandat 65.672 kb on + strandat 65.673 kb on - strandat 65.673 kb on - strandat 65.673 kb on - strandat 65.674 kb on + strandat 65.674 kb on + strandat 65.674 kb on + strandat 65.674 kb on + strandat 65.674 kb on + strandat 65.674 kb on + strandat 65.675 kb on - strandat 65.675 kb on - strandat 65.675 kb on - strandat 65.675 kb on - strandat 65.675 kb on - strandat 65.683 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.687 kb on + strandat 65.688 kb on - strandat 65.688 kb on - strandat 65.688 kb on - strandat 65.688 kb on - strandat 65.688 kb on - strandat 65.710 kb on + strandat 65.710 kb on + strandat 65.710 kb on + strandat 65.711 kb on - strandat 65.711 kb on - strandat 65.714 kb on + strandat 65.714 kb on + strandat 65.714 kb on + strandat 65.715 kb on - strandat 65.715 kb on - strandat 65.715 kb on - strandat 65.731 kb on - strandat 65.732 kb on + strandat 65.732 kb on + strandat 65.733 kb on - strandat 65.752 kb on - strandat 65.752 kb on - strandat 65.752 kb on - strandat 65.754 kb on + strandat 65.754 kb on + strandat 65.754 kb on + strandat 65.755 kb on - strandat 65.755 kb on - strandat 65.758 kb on + strandat 65.759 kb on - strandat 65.828 kb on + strand, within EX31_RS02935at 65.828 kb on + strand, within EX31_RS02935at 65.828 kb on + strand, within EX31_RS02935at 65.829 kb on - strand, within EX31_RS02935at 65.829 kb on - strand, within EX31_RS02935at 65.835 kb on + strand, within EX31_RS02935at 65.841 kb on - strand, within EX31_RS02935at 65.903 kb on + strand, within EX31_RS02935at 65.904 kb on - strand, within EX31_RS02935at 65.904 kb on - strand, within EX31_RS02935at 65.907 kb on + strand, within EX31_RS02935at 65.907 kb on + strand, within EX31_RS02935at 65.908 kb on - strand, within EX31_RS02935at 65.908 kb on - strand, within EX31_RS02935at 65.928 kb on + strand, within EX31_RS02935at 65.929 kb on - strand, within EX31_RS02935at 65.929 kb on - strand, within EX31_RS02935at 65.929 kb on - strand, within EX31_RS02935at 65.929 kb on - strand, within EX31_RS02935at 65.937 kb on + strand, within EX31_RS02935at 65.938 kb on - strand, within EX31_RS02935at 65.938 kb on - strand, within EX31_RS02935at 65.976 kb on + strand, within EX31_RS02935at 65.977 kb on - strand, within EX31_RS02935at 65.977 kb on - strand, within EX31_RS02935at 66.001 kb on - strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.004 kb on + strand, within EX31_RS02935at 66.005 kb on - strand, within EX31_RS02935at 66.005 kb on - strand, within EX31_RS02935at 66.079 kb on + strand, within EX31_RS02935at 66.079 kb on + strand, within EX31_RS02935at 66.080 kb on - strand, within EX31_RS02935at 66.096 kb on + strand, within EX31_RS02935at 66.096 kb on + strand, within EX31_RS02935at 66.096 kb on + strand, within EX31_RS02935at 66.097 kb on - strand, within EX31_RS02935at 66.097 kb on - strand, within EX31_RS02935at 66.097 kb on - strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.103 kb on + strand, within EX31_RS02935at 66.104 kb on - strand, within EX31_RS02935at 66.104 kb on - strand, within EX31_RS02935at 66.104 kb on - strand, within EX31_RS02935at 66.108 kb on - strand, within EX31_RS02935at 66.206 kb on - strand, within EX31_RS02935at 66.206 kb on - strand, within EX31_RS02935at 66.208 kb on + strand, within EX31_RS02935at 66.208 kb on + strand, within EX31_RS02935at 66.216 kb on + strand, within EX31_RS02935at 66.216 kb on + strand, within EX31_RS02935at 66.216 kb on + strand, within EX31_RS02935at 66.216 kb on + strand, within EX31_RS02935

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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62,429 - EX31_RS02920 0.51 -0.1
62,433 - EX31_RS02920 0.51 -1.0
62,433 - EX31_RS02920 0.51 -1.6
62,644 - EX31_RS02920 0.70 -1.5
62,881 - -1.5
63,141 + -0.8
63,142 - -0.6
63,142 - +0.8
63,320 - EX31_RS02925 0.11 +0.9
63,367 + EX31_RS02925 0.13 -1.9
63,368 - EX31_RS02925 0.13 -1.2
63,420 - EX31_RS02925 0.16 +1.2
63,485 + EX31_RS02925 0.19 -0.5
63,485 + EX31_RS02925 0.19 -0.6
63,486 - EX31_RS02925 0.19 +0.0
63,486 - EX31_RS02925 0.19 -1.6
63,522 + EX31_RS02925 0.20 -0.8
63,541 + EX31_RS02925 0.21 -1.5
63,542 - EX31_RS02925 0.21 -0.3
63,672 - EX31_RS02925 0.27 +0.2
63,674 - EX31_RS02925 0.27 -1.1
63,676 + EX31_RS02925 0.27 +0.3
63,677 - EX31_RS02925 0.28 +0.2
63,815 + EX31_RS02925 0.34 -0.6
63,972 - EX31_RS02925 0.41 +0.6
64,050 - EX31_RS02925 0.45 -0.4
64,050 - EX31_RS02925 0.45 +0.2
64,094 + EX31_RS02925 0.47 -0.4
64,103 - EX31_RS02925 0.47 -2.0
64,104 + EX31_RS02925 0.47 -0.2
64,104 + EX31_RS02925 0.47 -2.0
64,105 - EX31_RS02925 0.47 -1.1
64,300 + EX31_RS02925 0.56 -1.1
64,310 - EX31_RS02925 0.57 -0.6
64,331 + EX31_RS02925 0.57 -0.3
64,383 + EX31_RS02925 0.60 -0.3
64,430 - EX31_RS02925 0.62 -0.5
64,463 - EX31_RS02925 0.64 -0.9
64,463 - EX31_RS02925 0.64 +0.3
64,516 + EX31_RS02925 0.66 -0.1
64,516 + EX31_RS02925 0.66 -0.0
64,572 - EX31_RS02925 0.69 +0.3
64,601 + EX31_RS02925 0.70 +1.7
64,650 + EX31_RS02925 0.72 -0.6
64,651 - EX31_RS02925 0.72 -0.1
64,651 - EX31_RS02925 0.72 +0.4
64,655 - EX31_RS02925 0.72 +0.2
64,660 + EX31_RS02925 0.73 -0.5
64,660 + EX31_RS02925 0.73 -0.4
64,661 - EX31_RS02925 0.73 -0.3
64,724 + EX31_RS02925 0.76 -0.9
64,725 - EX31_RS02925 0.76 -1.1
64,814 - EX31_RS02925 0.80 -0.2
64,814 - EX31_RS02925 0.80 -0.1
64,836 + EX31_RS02925 0.81 -1.1
64,836 + EX31_RS02925 0.81 -1.6
64,837 - EX31_RS02925 0.81 +0.2
64,980 - EX31_RS02925 0.87 -1.6
64,980 - EX31_RS02925 0.87 +0.1
65,076 - -0.3
65,079 - -0.1
65,079 - -0.7
65,119 - -1.0
65,120 + -1.2
65,120 + -1.1
65,121 - -0.6
65,155 + -3.2
65,155 + -0.6
65,156 - +0.9
65,177 + +0.1
65,177 + -1.0
65,231 - -1.2
65,328 + EX31_RS02930 0.12 -1.1
65,335 - EX31_RS02930 0.14 -0.1
65,335 - EX31_RS02930 0.14 -0.4
65,356 + EX31_RS02930 0.18 -0.9
65,443 + EX31_RS02930 0.38 +0.5
65,484 + EX31_RS02930 0.48 +0.6
65,485 - EX31_RS02930 0.48 +0.5
65,521 + EX31_RS02930 0.56 +1.4
65,537 + EX31_RS02930 0.60 -1.5
65,538 - EX31_RS02930 0.60 +0.3
65,538 - EX31_RS02930 0.60 -1.3
65,538 - EX31_RS02930 0.60 -0.9
65,602 + EX31_RS02930 0.75 +0.4
65,672 + -0.9
65,672 + +0.5
65,673 - +0.4
65,673 - -0.2
65,673 - +0.7
65,674 + +0.4
65,674 + -0.2
65,674 + +1.5
65,674 + -0.3
65,674 + -0.3
65,674 + +0.6
65,675 - +0.4
65,675 - +0.2
65,675 - -0.4
65,675 - -0.2
65,675 - -1.0
65,683 + -0.1
65,687 + -1.4
65,687 + -0.7
65,687 + -2.6
65,687 + -0.0
65,687 + +0.7
65,687 + -0.0
65,687 + +0.4
65,687 + +0.2
65,688 - -0.9
65,688 - +0.2
65,688 - -0.3
65,688 - -0.4
65,688 - +0.6
65,710 + -2.2
65,710 + -1.4
65,710 + -0.9
65,711 - -0.4
65,711 - +0.2
65,714 + -1.2
65,714 + -1.4
65,714 + -0.8
65,715 - -0.2
65,715 - -0.9
65,715 - -1.3
65,731 - -0.2
65,732 + +0.9
65,732 + -0.6
65,733 - -0.1
65,752 - -1.1
65,752 - +0.1
65,752 - +0.2
65,754 + -0.7
65,754 + -1.5
65,754 + +0.8
65,755 - +1.6
65,755 - -0.3
65,758 + +0.3
65,759 - +0.0
65,828 + EX31_RS02935 0.10 -0.6
65,828 + EX31_RS02935 0.10 -1.4
65,828 + EX31_RS02935 0.10 +0.8
65,829 - EX31_RS02935 0.10 +0.5
65,829 - EX31_RS02935 0.10 +0.0
65,835 + EX31_RS02935 0.11 -0.8
65,841 - EX31_RS02935 0.11 -0.6
65,903 + EX31_RS02935 0.17 +0.1
65,904 - EX31_RS02935 0.17 -0.2
65,904 - EX31_RS02935 0.17 -1.5
65,907 + EX31_RS02935 0.17 +0.2
65,907 + EX31_RS02935 0.17 -0.2
65,908 - EX31_RS02935 0.17 -0.0
65,908 - EX31_RS02935 0.17 +0.1
65,928 + EX31_RS02935 0.19 +0.1
65,929 - EX31_RS02935 0.19 -0.8
65,929 - EX31_RS02935 0.19 -0.3
65,929 - EX31_RS02935 0.19 +0.2
65,929 - EX31_RS02935 0.19 +1.6
65,937 + EX31_RS02935 0.20 +0.0
65,938 - EX31_RS02935 0.20 -0.1
65,938 - EX31_RS02935 0.20 -0.8
65,976 + EX31_RS02935 0.23 +0.2
65,977 - EX31_RS02935 0.23 -0.0
65,977 - EX31_RS02935 0.23 -0.6
66,001 - EX31_RS02935 0.25 -0.9
66,004 + EX31_RS02935 0.26 -0.2
66,004 + EX31_RS02935 0.26 -0.8
66,004 + EX31_RS02935 0.26 -0.4
66,004 + EX31_RS02935 0.26 -0.2
66,004 + EX31_RS02935 0.26 -0.2
66,004 + EX31_RS02935 0.26 +0.2
66,005 - EX31_RS02935 0.26 -0.3
66,005 - EX31_RS02935 0.26 +0.2
66,079 + EX31_RS02935 0.32 -0.6
66,079 + EX31_RS02935 0.32 +0.5
66,080 - EX31_RS02935 0.32 +1.0
66,096 + EX31_RS02935 0.34 +0.1
66,096 + EX31_RS02935 0.34 -1.2
66,096 + EX31_RS02935 0.34 -0.0
66,097 - EX31_RS02935 0.34 -0.6
66,097 - EX31_RS02935 0.34 +0.4
66,097 - EX31_RS02935 0.34 +0.3
66,103 + EX31_RS02935 0.34 +0.9
66,103 + EX31_RS02935 0.34 -2.4
66,103 + EX31_RS02935 0.34 -0.2
66,103 + EX31_RS02935 0.34 -0.7
66,103 + EX31_RS02935 0.34 -0.4
66,103 + EX31_RS02935 0.34 +0.0
66,104 - EX31_RS02935 0.34 +0.0
66,104 - EX31_RS02935 0.34 -0.8
66,104 - EX31_RS02935 0.34 -2.4
66,108 - EX31_RS02935 0.35 +0.4
66,206 - EX31_RS02935 0.43 +0.5
66,206 - EX31_RS02935 0.43 +0.3
66,208 + EX31_RS02935 0.44 -1.1
66,208 + EX31_RS02935 0.44 +0.0
66,216 + EX31_RS02935 0.44 +0.7
66,216 + EX31_RS02935 0.44 -0.5
66,216 + EX31_RS02935 0.44 +0.3
66,216 + EX31_RS02935 0.44 +0.2

Or see this region's nucleotide sequence