Strain Fitness in Rahnella sp. WP5 around EX31_RS02600

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02590 and EX31_RS02595 overlap by 4 nucleotidesEX31_RS02595 and EX31_RS02600 are separated by 93 nucleotidesEX31_RS02600 and EX31_RS02605 are separated by 140 nucleotides EX31_RS02590: EX31_RS02590 - nucleoside hydrolase, at 549,687 to 550,637 _RS02590 EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518 _RS02595 EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171 _RS02600 EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199 _RS02605 Position (kb) 551 552 553 554Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 550.754 kb on - strand, within EX31_RS02595at 550.756 kb on + strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.757 kb on - strand, within EX31_RS02595at 550.768 kb on + strand, within EX31_RS02595at 550.773 kb on + strand, within EX31_RS02595at 550.773 kb on + strand, within EX31_RS02595at 550.774 kb on - strand, within EX31_RS02595at 550.774 kb on - strand, within EX31_RS02595at 550.857 kb on + strand, within EX31_RS02595at 550.885 kb on + strand, within EX31_RS02595at 550.886 kb on - strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.942 kb on + strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.943 kb on - strand, within EX31_RS02595at 550.961 kb on + strand, within EX31_RS02595at 550.961 kb on + strand, within EX31_RS02595at 550.962 kb on - strand, within EX31_RS02595at 551.029 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.032 kb on + strand, within EX31_RS02595at 551.033 kb on - strand, within EX31_RS02595at 551.033 kb on - strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.034 kb on + strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.035 kb on - strand, within EX31_RS02595at 551.042 kb on - strand, within EX31_RS02595at 551.042 kb on - strand, within EX31_RS02595at 551.111 kb on - strand, within EX31_RS02595at 551.112 kb on + strand, within EX31_RS02595at 551.113 kb on - strand, within EX31_RS02595at 551.113 kb on - strand, within EX31_RS02595at 551.337 kb on - strand, within EX31_RS02595at 551.491 kb on - strandat 551.518 kb on + strandat 551.519 kb on - strandat 551.519 kb on - strandat 551.519 kb on - strandat 551.535 kb on - strandat 551.538 kb on - strandat 551.538 kb on - strandat 551.542 kb on + strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.543 kb on - strandat 551.545 kb on + strandat 551.546 kb on - strandat 551.546 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.551 kb on - strandat 551.553 kb on + strandat 551.644 kb on + strandat 551.667 kb on + strandat 551.667 kb on + strandat 551.668 kb on - strandat 551.668 kb on - strandat 551.668 kb on - strandat 551.671 kb on + strandat 551.671 kb on + strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.672 kb on - strandat 551.673 kb on + strandat 551.673 kb on + strandat 551.674 kb on - strandat 551.674 kb on - strandat 551.674 kb on - strandat 551.698 kb on - strandat 551.698 kb on - strandat 551.815 kb on + strand, within EX31_RS02600at 551.974 kb on - strand, within EX31_RS02600at 551.974 kb on - strand, within EX31_RS02600at 552.008 kb on - strand, within EX31_RS02600at 552.053 kb on - strand, within EX31_RS02600at 552.154 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.190 kb on - strand, within EX31_RS02600at 552.365 kb on + strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.376 kb on + strand, within EX31_RS02600at 552.377 kb on - strand, within EX31_RS02600at 552.460 kb on + strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600at 552.530 kb on - strand, within EX31_RS02600at 552.688 kb on + strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.701 kb on + strand, within EX31_RS02600at 552.702 kb on - strand, within EX31_RS02600at 552.709 kb on + strand, within EX31_RS02600at 552.709 kb on + strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.714 kb on - strand, within EX31_RS02600at 552.714 kb on - strand, within EX31_RS02600at 552.716 kb on + strand, within EX31_RS02600at 552.716 kb on + strand, within EX31_RS02600at 552.717 kb on - strand, within EX31_RS02600at 552.793 kb on - strand, within EX31_RS02600at 552.793 kb on - strand, within EX31_RS02600at 552.800 kb on - strand, within EX31_RS02600at 552.800 kb on - strand, within EX31_RS02600at 552.802 kb on - strand, within EX31_RS02600at 552.966 kb on - strand, within EX31_RS02600at 553.004 kb on + strand, within EX31_RS02600at 553.004 kb on + strand, within EX31_RS02600at 553.005 kb on - strand, within EX31_RS02600at 553.041 kb on + strandat 553.057 kb on + strandat 553.087 kb on + strandat 553.088 kb on - strandat 553.088 kb on - strandat 553.088 kb on - strandat 553.104 kb on - strandat 553.177 kb on + strandat 553.177 kb on + strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.213 kb on - strandat 553.223 kb on - strandat 553.235 kb on - strandat 553.282 kb on - strandat 553.311 kb on + strandat 553.334 kb on + strandat 553.335 kb on - strandat 553.531 kb on + strand, within EX31_RS02605at 553.531 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.557 kb on + strand, within EX31_RS02605at 553.571 kb on + strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.665 kb on + strand, within EX31_RS02605at 553.674 kb on + strand, within EX31_RS02605at 553.675 kb on - strand, within EX31_RS02605at 553.890 kb on + strand, within EX31_RS02605at 553.893 kb on + strand, within EX31_RS02605at 553.893 kb on + strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.896 kb on - strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.960 kb on - strand, within EX31_RS02605at 553.960 kb on - strand, within EX31_RS02605at 554.157 kb on + strandat 554.157 kb on + strandat 554.158 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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550,754 - EX31_RS02595 0.14 -0.9
550,756 + EX31_RS02595 0.14 -0.2
550,757 - EX31_RS02595 0.14 -1.1
550,757 - EX31_RS02595 0.14 +0.2
550,757 - EX31_RS02595 0.14 +0.3
550,757 - EX31_RS02595 0.14 +0.3
550,768 + EX31_RS02595 0.15 +0.4
550,773 + EX31_RS02595 0.16 -0.3
550,773 + EX31_RS02595 0.16 -0.0
550,774 - EX31_RS02595 0.16 -0.5
550,774 - EX31_RS02595 0.16 +0.0
550,857 + EX31_RS02595 0.25 -0.5
550,885 + EX31_RS02595 0.28 +0.8
550,886 - EX31_RS02595 0.28 +0.5
550,942 + EX31_RS02595 0.35 -0.2
550,942 + EX31_RS02595 0.35 -0.4
550,942 + EX31_RS02595 0.35 +0.6
550,942 + EX31_RS02595 0.35 -0.6
550,943 - EX31_RS02595 0.35 -0.4
550,943 - EX31_RS02595 0.35 -0.6
550,943 - EX31_RS02595 0.35 +0.2
550,943 - EX31_RS02595 0.35 +1.4
550,943 - EX31_RS02595 0.35 -0.7
550,943 - EX31_RS02595 0.35 -0.4
550,961 + EX31_RS02595 0.37 -0.7
550,961 + EX31_RS02595 0.37 -0.6
550,962 - EX31_RS02595 0.37 -0.3
551,029 + EX31_RS02595 0.45 +0.7
551,032 + EX31_RS02595 0.45 +0.3
551,032 + EX31_RS02595 0.45 +0.8
551,032 + EX31_RS02595 0.45 -0.4
551,032 + EX31_RS02595 0.45 +1.1
551,033 - EX31_RS02595 0.45 +1.2
551,033 - EX31_RS02595 0.45 +0.1
551,034 + EX31_RS02595 0.45 +0.3
551,034 + EX31_RS02595 0.45 +0.9
551,034 + EX31_RS02595 0.45 -0.9
551,034 + EX31_RS02595 0.45 -0.4
551,035 - EX31_RS02595 0.45 -0.2
551,035 - EX31_RS02595 0.45 +0.5
551,035 - EX31_RS02595 0.45 +0.3
551,035 - EX31_RS02595 0.45 -0.4
551,035 - EX31_RS02595 0.45 -0.2
551,035 - EX31_RS02595 0.45 -0.5
551,035 - EX31_RS02595 0.45 -1.3
551,035 - EX31_RS02595 0.45 +1.3
551,035 - EX31_RS02595 0.45 +1.3
551,035 - EX31_RS02595 0.45 +0.4
551,042 - EX31_RS02595 0.46 -0.4
551,042 - EX31_RS02595 0.46 +1.1
551,111 - EX31_RS02595 0.54 -0.2
551,112 + EX31_RS02595 0.54 +1.0
551,113 - EX31_RS02595 0.54 -1.1
551,113 - EX31_RS02595 0.54 -0.9
551,337 - EX31_RS02595 0.79 +0.2
551,491 - +0.2
551,518 + -0.1
551,519 - +0.2
551,519 - +0.1
551,519 - -0.4
551,535 - +0.1
551,538 - +0.8
551,538 - -0.0
551,542 + -0.4
551,543 - -0.4
551,543 - +1.2
551,543 - +0.9
551,543 - +0.8
551,543 - +0.6
551,543 - +0.7
551,543 - +0.3
551,543 - -0.2
551,543 - +0.1
551,543 - -0.4
551,543 - -0.1
551,543 - -0.5
551,543 - +0.6
551,543 - +0.0
551,543 - -1.1
551,545 + +0.3
551,546 - +0.7
551,546 - -0.3
551,551 - +0.7
551,551 - +0.7
551,551 - -1.0
551,551 - +0.3
551,553 + -0.1
551,644 + +0.2
551,667 + +0.8
551,667 + -0.6
551,668 - -0.4
551,668 - +0.1
551,668 - +0.6
551,671 + -0.3
551,671 + -0.5
551,672 - -1.3
551,672 - -0.3
551,672 - -0.2
551,672 - -0.4
551,672 - +0.8
551,673 + +0.6
551,673 + -0.2
551,674 - -0.0
551,674 - +0.4
551,674 - +0.8
551,698 - -0.2
551,698 - +0.2
551,815 + EX31_RS02600 0.13 -0.6
551,974 - EX31_RS02600 0.23 -0.1
551,974 - EX31_RS02600 0.23 -0.6
552,008 - EX31_RS02600 0.25 -0.7
552,053 - EX31_RS02600 0.28 +0.8
552,154 - EX31_RS02600 0.35 -0.3
552,190 - EX31_RS02600 0.37 -0.7
552,190 - EX31_RS02600 0.37 +1.1
552,190 - EX31_RS02600 0.37 +0.5
552,365 + EX31_RS02600 0.48 -0.4
552,366 - EX31_RS02600 0.48 +0.0
552,366 - EX31_RS02600 0.48 +0.3
552,369 + EX31_RS02600 0.49 +0.4
552,369 + EX31_RS02600 0.49 +1.1
552,376 + EX31_RS02600 0.49 +2.2
552,377 - EX31_RS02600 0.49 -0.2
552,460 + EX31_RS02600 0.54 +1.4
552,461 - EX31_RS02600 0.54 +1.0
552,461 - EX31_RS02600 0.54 -1.0
552,530 - EX31_RS02600 0.59 -0.1
552,688 + EX31_RS02600 0.69 -0.6
552,689 - EX31_RS02600 0.69 +0.2
552,689 - EX31_RS02600 0.69 +0.1
552,689 - EX31_RS02600 0.69 +0.2
552,701 + EX31_RS02600 0.70 -0.3
552,702 - EX31_RS02600 0.70 +0.7
552,709 + EX31_RS02600 0.70 -0.2
552,709 + EX31_RS02600 0.70 +1.6
552,710 - EX31_RS02600 0.70 +0.8
552,710 - EX31_RS02600 0.70 +0.5
552,710 - EX31_RS02600 0.70 +0.1
552,710 - EX31_RS02600 0.70 +1.3
552,713 + EX31_RS02600 0.71 -1.8
552,713 + EX31_RS02600 0.71 -0.4
552,713 + EX31_RS02600 0.71 -0.6
552,713 + EX31_RS02600 0.71 +0.8
552,714 - EX31_RS02600 0.71 +1.4
552,714 - EX31_RS02600 0.71 +1.3
552,716 + EX31_RS02600 0.71 -0.8
552,716 + EX31_RS02600 0.71 -0.4
552,717 - EX31_RS02600 0.71 -0.7
552,793 - EX31_RS02600 0.76 -0.7
552,793 - EX31_RS02600 0.76 -0.1
552,800 - EX31_RS02600 0.76 -0.4
552,800 - EX31_RS02600 0.76 +1.3
552,802 - EX31_RS02600 0.76 -0.0
552,966 - EX31_RS02600 0.87 -0.5
553,004 + EX31_RS02600 0.89 +0.4
553,004 + EX31_RS02600 0.89 -2.0
553,005 - EX31_RS02600 0.89 -0.3
553,041 + -0.2
553,057 + +0.5
553,087 + +0.7
553,088 - -0.3
553,088 - +0.0
553,088 - +1.8
553,104 - -0.3
553,177 + -1.1
553,177 + +0.5
553,189 - +0.5
553,189 - +0.3
553,189 - +0.3
553,189 - +1.3
553,213 - +0.6
553,223 - -0.3
553,235 - +0.4
553,282 - -0.2
553,311 + +0.6
553,334 + +0.5
553,335 - +0.2
553,531 + EX31_RS02605 0.25 -0.2
553,531 + EX31_RS02605 0.25 +0.6
553,548 + EX31_RS02605 0.27 -0.4
553,548 + EX31_RS02605 0.27 -1.0
553,548 + EX31_RS02605 0.27 +0.4
553,549 - EX31_RS02605 0.27 -0.3
553,549 - EX31_RS02605 0.27 -0.3
553,549 - EX31_RS02605 0.27 +0.0
553,549 - EX31_RS02605 0.27 -1.6
553,549 - EX31_RS02605 0.27 -0.5
553,549 - EX31_RS02605 0.27 -1.2
553,549 - EX31_RS02605 0.27 +0.2
553,549 - EX31_RS02605 0.27 +1.1
553,557 + EX31_RS02605 0.28 -0.4
553,571 + EX31_RS02605 0.29 -0.3
553,572 - EX31_RS02605 0.29 +0.3
553,572 - EX31_RS02605 0.29 +1.0
553,572 - EX31_RS02605 0.29 +0.0
553,572 - EX31_RS02605 0.29 -1.4
553,665 + EX31_RS02605 0.40 -1.1
553,674 + EX31_RS02605 0.41 -1.2
553,675 - EX31_RS02605 0.41 +0.7
553,890 + EX31_RS02605 0.65 -0.4
553,893 + EX31_RS02605 0.65 +0.1
553,893 + EX31_RS02605 0.65 -0.5
553,894 - EX31_RS02605 0.66 +1.0
553,894 - EX31_RS02605 0.66 -2.6
553,894 - EX31_RS02605 0.66 -0.5
553,896 - EX31_RS02605 0.66 +0.9
553,955 + EX31_RS02605 0.72 -0.8
553,955 + EX31_RS02605 0.72 -0.4
553,955 + EX31_RS02605 0.72 -0.6
553,955 + EX31_RS02605 0.72 +0.8
553,956 - EX31_RS02605 0.73 +1.0
553,956 - EX31_RS02605 0.73 +0.2
553,956 - EX31_RS02605 0.73 -0.5
553,956 - EX31_RS02605 0.73 -0.0
553,956 - EX31_RS02605 0.73 -0.3
553,957 + EX31_RS02605 0.73 +0.4
553,957 + EX31_RS02605 0.73 +0.2
553,957 + EX31_RS02605 0.73 -1.1
553,957 + EX31_RS02605 0.73 +0.2
553,957 + EX31_RS02605 0.73 -0.6
553,958 - EX31_RS02605 0.73 +2.0
553,958 - EX31_RS02605 0.73 +0.4
553,958 - EX31_RS02605 0.73 +0.5
553,958 - EX31_RS02605 0.73 -0.4
553,958 - EX31_RS02605 0.73 -0.5
553,958 - EX31_RS02605 0.73 -0.3
553,958 - EX31_RS02605 0.73 +0.4
553,958 - EX31_RS02605 0.73 +0.0
553,958 - EX31_RS02605 0.73 +1.3
553,959 + EX31_RS02605 0.73 +0.5
553,959 + EX31_RS02605 0.73 -0.4
553,959 + EX31_RS02605 0.73 -0.3
553,959 + EX31_RS02605 0.73 -0.7
553,959 + EX31_RS02605 0.73 +0.4
553,959 + EX31_RS02605 0.73 -0.1
553,959 + EX31_RS02605 0.73 +0.7
553,959 + EX31_RS02605 0.73 -2.9
553,959 + EX31_RS02605 0.73 +0.1
553,959 + EX31_RS02605 0.73 -0.6
553,959 + EX31_RS02605 0.73 -1.0
553,960 - EX31_RS02605 0.73 +0.8
553,960 - EX31_RS02605 0.73 -0.9
554,157 + +0.3
554,157 + +1.0
554,158 - +0.1

Or see this region's nucleotide sequence