Strain Fitness in Rahnella sp. WP5 around EX31_RS02440

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02435 and EX31_RS02440 are separated by 10 nucleotidesEX31_RS02440 and EX31_RS02445 are separated by 0 nucleotides EX31_RS02435: EX31_RS02435 - acyl--CoA ligase, at 516,958 to 518,538 _RS02435 EX31_RS02440: EX31_RS02440 - hypothetical protein, at 518,549 to 518,803 _RS02440 EX31_RS02445: EX31_RS02445 - AMP-binding protein, at 518,804 to 520,357 _RS02445 Position (kb) 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1at 517.555 kb on + strand, within EX31_RS02435at 517.555 kb on + strand, within EX31_RS02435at 517.556 kb on - strand, within EX31_RS02435at 517.556 kb on - strand, within EX31_RS02435at 517.801 kb on - strand, within EX31_RS02435at 517.813 kb on - strand, within EX31_RS02435at 517.884 kb on + strand, within EX31_RS02435at 517.888 kb on + strand, within EX31_RS02435at 517.888 kb on + strand, within EX31_RS02435at 517.888 kb on + strand, within EX31_RS02435at 517.889 kb on - strand, within EX31_RS02435at 517.947 kb on + strand, within EX31_RS02435at 517.947 kb on + strand, within EX31_RS02435at 517.947 kb on + strand, within EX31_RS02435at 517.948 kb on - strand, within EX31_RS02435at 517.948 kb on - strand, within EX31_RS02435at 517.948 kb on - strand, within EX31_RS02435at 518.106 kb on - strand, within EX31_RS02435at 518.106 kb on - strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.140 kb on + strand, within EX31_RS02435at 518.141 kb on - strand, within EX31_RS02435at 518.151 kb on + strand, within EX31_RS02435at 518.151 kb on + strand, within EX31_RS02435at 518.151 kb on + strand, within EX31_RS02435at 518.152 kb on - strand, within EX31_RS02435at 518.152 kb on - strand, within EX31_RS02435at 518.152 kb on - strand, within EX31_RS02435at 518.314 kb on + strand, within EX31_RS02435at 518.314 kb on + strand, within EX31_RS02435at 518.404 kb on + strandat 518.404 kb on + strandat 518.404 kb on + strandat 518.452 kb on - strandat 518.644 kb on - strand, within EX31_RS02440at 518.644 kb on - strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.663 kb on + strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.664 kb on - strand, within EX31_RS02440at 518.677 kb on + strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.678 kb on - strand, within EX31_RS02440at 518.878 kb on + strandat 518.879 kb on - strandat 518.971 kb on - strand, within EX31_RS02445at 518.987 kb on + strand, within EX31_RS02445at 518.995 kb on + strand, within EX31_RS02445at 518.996 kb on - strand, within EX31_RS02445at 518.996 kb on - strand, within EX31_RS02445at 518.996 kb on - strand, within EX31_RS02445at 518.996 kb on - strand, within EX31_RS02445at 519.278 kb on + strand, within EX31_RS02445at 519.279 kb on - strand, within EX31_RS02445at 519.341 kb on - strand, within EX31_RS02445at 519.429 kb on + strand, within EX31_RS02445at 519.672 kb on + strand, within EX31_RS02445at 519.672 kb on + strand, within EX31_RS02445at 519.673 kb on - strand, within EX31_RS02445at 519.710 kb on + strand, within EX31_RS02445at 519.710 kb on + strand, within EX31_RS02445at 519.711 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.752 kb on - strand, within EX31_RS02445at 519.754 kb on + strand, within EX31_RS02445at 519.755 kb on - strand, within EX31_RS02445

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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517,555 + EX31_RS02435 0.38 +0.9
517,555 + EX31_RS02435 0.38 -0.6
517,556 - EX31_RS02435 0.38 -0.2
517,556 - EX31_RS02435 0.38 -0.0
517,801 - EX31_RS02435 0.53 +0.3
517,813 - EX31_RS02435 0.54 -0.2
517,884 + EX31_RS02435 0.59 -1.2
517,888 + EX31_RS02435 0.59 -0.0
517,888 + EX31_RS02435 0.59 -0.6
517,888 + EX31_RS02435 0.59 -0.2
517,889 - EX31_RS02435 0.59 -0.7
517,947 + EX31_RS02435 0.63 +0.2
517,947 + EX31_RS02435 0.63 +1.6
517,947 + EX31_RS02435 0.63 -1.3
517,948 - EX31_RS02435 0.63 -0.4
517,948 - EX31_RS02435 0.63 -1.2
517,948 - EX31_RS02435 0.63 +0.4
518,106 - EX31_RS02435 0.73 +0.7
518,106 - EX31_RS02435 0.73 -1.2
518,140 + EX31_RS02435 0.75 -0.1
518,140 + EX31_RS02435 0.75 -0.3
518,140 + EX31_RS02435 0.75 +0.3
518,140 + EX31_RS02435 0.75 -0.7
518,140 + EX31_RS02435 0.75 +0.7
518,140 + EX31_RS02435 0.75 +0.0
518,140 + EX31_RS02435 0.75 -0.4
518,141 - EX31_RS02435 0.75 -0.5
518,151 + EX31_RS02435 0.75 +1.0
518,151 + EX31_RS02435 0.75 +0.9
518,151 + EX31_RS02435 0.75 -0.4
518,152 - EX31_RS02435 0.76 +0.2
518,152 - EX31_RS02435 0.76 -0.4
518,152 - EX31_RS02435 0.76 -0.3
518,314 + EX31_RS02435 0.86 -1.3
518,314 + EX31_RS02435 0.86 -0.3
518,404 + -0.2
518,404 + +0.6
518,404 + +0.2
518,452 - -0.1
518,644 - EX31_RS02440 0.37 -1.7
518,644 - EX31_RS02440 0.37 -0.3
518,663 + EX31_RS02440 0.45 +0.0
518,663 + EX31_RS02440 0.45 -0.6
518,663 + EX31_RS02440 0.45 +0.1
518,663 + EX31_RS02440 0.45 -0.7
518,663 + EX31_RS02440 0.45 -0.4
518,663 + EX31_RS02440 0.45 -0.7
518,663 + EX31_RS02440 0.45 +0.9
518,663 + EX31_RS02440 0.45 -1.1
518,663 + EX31_RS02440 0.45 +0.8
518,664 - EX31_RS02440 0.45 -1.8
518,664 - EX31_RS02440 0.45 -1.3
518,664 - EX31_RS02440 0.45 -0.3
518,664 - EX31_RS02440 0.45 -0.4
518,664 - EX31_RS02440 0.45 +0.6
518,664 - EX31_RS02440 0.45 -0.7
518,664 - EX31_RS02440 0.45 -0.9
518,677 + EX31_RS02440 0.50 +0.3
518,678 - EX31_RS02440 0.51 +0.4
518,678 - EX31_RS02440 0.51 -1.0
518,678 - EX31_RS02440 0.51 +0.3
518,678 - EX31_RS02440 0.51 +0.5
518,678 - EX31_RS02440 0.51 -1.0
518,678 - EX31_RS02440 0.51 -0.3
518,878 + -0.1
518,879 - -0.7
518,971 - EX31_RS02445 0.11 -0.7
518,987 + EX31_RS02445 0.12 +0.0
518,995 + EX31_RS02445 0.12 -1.6
518,996 - EX31_RS02445 0.12 -2.0
518,996 - EX31_RS02445 0.12 -0.4
518,996 - EX31_RS02445 0.12 -0.5
518,996 - EX31_RS02445 0.12 -0.8
519,278 + EX31_RS02445 0.31 +0.9
519,279 - EX31_RS02445 0.31 -1.0
519,341 - EX31_RS02445 0.35 -0.1
519,429 + EX31_RS02445 0.40 +0.1
519,672 + EX31_RS02445 0.56 -0.2
519,672 + EX31_RS02445 0.56 +0.2
519,673 - EX31_RS02445 0.56 +0.2
519,710 + EX31_RS02445 0.58 +0.0
519,710 + EX31_RS02445 0.58 -3.1
519,711 - EX31_RS02445 0.58 -0.6
519,752 - EX31_RS02445 0.61 +0.4
519,752 - EX31_RS02445 0.61 +0.5
519,752 - EX31_RS02445 0.61 -0.4
519,754 + EX31_RS02445 0.61 -0.4
519,755 - EX31_RS02445 0.61 +0.3

Or see this region's nucleotide sequence