Strain Fitness in Rahnella sp. WP5 around EX31_RS01800

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01795 and EX31_RS01800 are separated by 74 nucleotidesEX31_RS01800 and EX31_RS01805 are separated by 610 nucleotidesEX31_RS01805 and EX31_RS01810 are separated by 158 nucleotides EX31_RS01795: EX31_RS01795 - tyrosine-type recombinase/integrase, at 384,282 to 385,406 _RS01795 EX31_RS01800: EX31_RS01800 - porin, at 385,481 to 386,152 _RS01800 EX31_RS01805: EX31_RS01805 - hypothetical protein, at 386,763 to 386,951 _RS01805 EX31_RS01810: EX31_RS01810 - hypothetical protein, at 387,110 to 387,523 _RS01810 Position (kb) 385 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1at 384.528 kb on - strand, within EX31_RS01795at 384.546 kb on - strand, within EX31_RS01795at 384.550 kb on - strand, within EX31_RS01795at 384.671 kb on - strand, within EX31_RS01795at 384.705 kb on + strand, within EX31_RS01795at 384.754 kb on + strand, within EX31_RS01795at 384.763 kb on + strand, within EX31_RS01795at 384.807 kb on - strand, within EX31_RS01795at 384.940 kb on + strand, within EX31_RS01795at 384.965 kb on + strand, within EX31_RS01795at 384.967 kb on + strand, within EX31_RS01795at 384.968 kb on - strand, within EX31_RS01795at 385.010 kb on + strand, within EX31_RS01795at 385.012 kb on + strand, within EX31_RS01795at 385.013 kb on - strand, within EX31_RS01795at 385.013 kb on - strand, within EX31_RS01795at 385.013 kb on - strand, within EX31_RS01795at 385.039 kb on + strand, within EX31_RS01795at 385.040 kb on - strand, within EX31_RS01795at 385.043 kb on + strand, within EX31_RS01795at 385.043 kb on + strand, within EX31_RS01795at 385.044 kb on - strand, within EX31_RS01795at 385.180 kb on + strand, within EX31_RS01795at 385.180 kb on + strand, within EX31_RS01795at 385.181 kb on - strand, within EX31_RS01795at 385.184 kb on + strand, within EX31_RS01795at 385.327 kb on + strandat 385.362 kb on + strandat 385.363 kb on - strandat 385.408 kb on + strandat 385.474 kb on + strandat 385.516 kb on + strandat 385.590 kb on + strand, within EX31_RS01800at 385.590 kb on + strand, within EX31_RS01800at 385.590 kb on + strand, within EX31_RS01800at 385.591 kb on - strand, within EX31_RS01800at 385.661 kb on + strand, within EX31_RS01800at 385.662 kb on - strand, within EX31_RS01800at 385.689 kb on + strand, within EX31_RS01800at 385.705 kb on + strand, within EX31_RS01800at 385.740 kb on + strand, within EX31_RS01800at 385.740 kb on + strand, within EX31_RS01800at 385.740 kb on + strand, within EX31_RS01800at 385.740 kb on + strand, within EX31_RS01800at 385.741 kb on - strand, within EX31_RS01800at 385.741 kb on - strand, within EX31_RS01800at 385.741 kb on - strand, within EX31_RS01800at 385.808 kb on - strand, within EX31_RS01800at 385.882 kb on + strand, within EX31_RS01800at 385.986 kb on + strand, within EX31_RS01800at 385.986 kb on + strand, within EX31_RS01800at 385.987 kb on - strand, within EX31_RS01800at 385.987 kb on - strand, within EX31_RS01800at 385.987 kb on - strand, within EX31_RS01800at 385.991 kb on + strand, within EX31_RS01800at 386.075 kb on - strand, within EX31_RS01800at 386.082 kb on - strand, within EX31_RS01800at 386.082 kb on - strand, within EX31_RS01800at 386.424 kb on + strandat 386.449 kb on - strandat 386.451 kb on - strandat 386.491 kb on - strandat 386.636 kb on + strandat 386.681 kb on + strandat 386.757 kb on + strandat 386.757 kb on + strandat 386.855 kb on + strand, within EX31_RS01805at 386.855 kb on + strand, within EX31_RS01805at 386.904 kb on - strand, within EX31_RS01805at 386.937 kb on + strandat 386.937 kb on + strandat 386.938 kb on - strandat 386.938 kb on - strandat 386.938 kb on - strandat 387.046 kb on + strandat 387.046 kb on + strandat 387.047 kb on - strandat 387.111 kb on + strandat 387.111 kb on + strandat 387.113 kb on + strandat 387.113 kb on + strandat 387.114 kb on - strandat 387.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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384,528 - EX31_RS01795 0.22 -0.1
384,546 - EX31_RS01795 0.23 +0.4
384,550 - EX31_RS01795 0.24 -1.4
384,671 - EX31_RS01795 0.35 -1.0
384,705 + EX31_RS01795 0.38 -0.1
384,754 + EX31_RS01795 0.42 -1.4
384,763 + EX31_RS01795 0.43 -1.7
384,807 - EX31_RS01795 0.47 -0.6
384,940 + EX31_RS01795 0.58 -0.1
384,965 + EX31_RS01795 0.61 -1.5
384,967 + EX31_RS01795 0.61 +0.9
384,968 - EX31_RS01795 0.61 +0.4
385,010 + EX31_RS01795 0.65 -0.4
385,012 + EX31_RS01795 0.65 -0.5
385,013 - EX31_RS01795 0.65 -0.2
385,013 - EX31_RS01795 0.65 -1.4
385,013 - EX31_RS01795 0.65 +0.6
385,039 + EX31_RS01795 0.67 +0.4
385,040 - EX31_RS01795 0.67 -2.0
385,043 + EX31_RS01795 0.68 +0.3
385,043 + EX31_RS01795 0.68 -2.7
385,044 - EX31_RS01795 0.68 +0.6
385,180 + EX31_RS01795 0.80 +0.7
385,180 + EX31_RS01795 0.80 -2.1
385,181 - EX31_RS01795 0.80 +0.4
385,184 + EX31_RS01795 0.80 +1.3
385,327 + +0.1
385,362 + -1.0
385,363 - +1.5
385,408 + +0.1
385,474 + -0.4
385,516 + -0.1
385,590 + EX31_RS01800 0.16 -0.5
385,590 + EX31_RS01800 0.16 +0.3
385,590 + EX31_RS01800 0.16 +0.6
385,591 - EX31_RS01800 0.16 -2.1
385,661 + EX31_RS01800 0.27 -1.2
385,662 - EX31_RS01800 0.27 -0.3
385,689 + EX31_RS01800 0.31 -1.0
385,705 + EX31_RS01800 0.33 -0.4
385,740 + EX31_RS01800 0.39 +0.3
385,740 + EX31_RS01800 0.39 +0.3
385,740 + EX31_RS01800 0.39 -0.6
385,740 + EX31_RS01800 0.39 -2.2
385,741 - EX31_RS01800 0.39 -0.1
385,741 - EX31_RS01800 0.39 -1.1
385,741 - EX31_RS01800 0.39 -1.2
385,808 - EX31_RS01800 0.49 -1.0
385,882 + EX31_RS01800 0.60 -0.8
385,986 + EX31_RS01800 0.75 +0.3
385,986 + EX31_RS01800 0.75 -0.1
385,987 - EX31_RS01800 0.75 -1.8
385,987 - EX31_RS01800 0.75 -0.4
385,987 - EX31_RS01800 0.75 -2.9
385,991 + EX31_RS01800 0.76 -1.8
386,075 - EX31_RS01800 0.88 -2.2
386,082 - EX31_RS01800 0.89 +0.2
386,082 - EX31_RS01800 0.89 -2.6
386,424 + +1.0
386,449 - -2.0
386,451 - -0.2
386,491 - -0.0
386,636 + +0.1
386,681 + -0.7
386,757 + -0.7
386,757 + -0.0
386,855 + EX31_RS01805 0.49 -2.0
386,855 + EX31_RS01805 0.49 -0.1
386,904 - EX31_RS01805 0.75 +0.2
386,937 + -0.6
386,937 + -0.1
386,938 - -1.2
386,938 - -1.1
386,938 - +0.1
387,046 + -0.0
387,046 + -0.8
387,047 - +0.8
387,111 + +0.4
387,111 + -1.7
387,113 + +0.4
387,113 + +0.6
387,114 - -0.1
387,114 - -0.7

Or see this region's nucleotide sequence