Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00365 and EX31_RS00370 overlap by 4 nucleotides EX31_RS00370 and EX31_RS00375 overlap by 29 nucleotides EX31_RS00375 and EX31_RS00380 are separated by 24 nucleotides EX31_RS00380 and EX31_RS25885 are separated by 44 nucleotides
EX31_RS00365: EX31_RS00365 - ABC transporter permease, at 77,241 to 78,257
_RS00365
EX31_RS00370: EX31_RS00370 - ABC transporter permease, at 78,254 to 79,159
_RS00370
EX31_RS00375: EX31_RS00375 - ABC transporter ATP-binding protein, at 79,131 to 79,997
_RS00375
EX31_RS00380: EX31_RS00380 - ABC transporter ATP-binding protein, at 80,022 to 80,792
_RS00380
EX31_RS25885: EX31_RS25885 - type VI secretion system baseplate subunit TssG, at 80,837 to 80,971
_RS25885
Position (kb) 79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.137 kb on + strand, within EX31_RS00365 at 78.138 kb on - strand, within EX31_RS00365 at 78.185 kb on + strand at 78.225 kb on + strand at 78.225 kb on + strand at 78.462 kb on + strand, within EX31_RS00370 at 78.527 kb on - strand, within EX31_RS00370 at 78.545 kb on + strand, within EX31_RS00370 at 78.566 kb on + strand, within EX31_RS00370 at 78.566 kb on + strand, within EX31_RS00370 at 78.566 kb on + strand, within EX31_RS00370 at 78.763 kb on + strand, within EX31_RS00370 at 78.925 kb on + strand, within EX31_RS00370 at 78.937 kb on + strand, within EX31_RS00370 at 79.024 kb on - strand, within EX31_RS00370 at 79.036 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.040 kb on + strand, within EX31_RS00370 at 79.041 kb on - strand, within EX31_RS00370 at 79.041 kb on - strand, within EX31_RS00370 at 79.041 kb on - strand, within EX31_RS00370 at 79.306 kb on + strand, within EX31_RS00375 at 79.307 kb on - strand, within EX31_RS00375 at 79.307 kb on - strand, within EX31_RS00375 at 79.307 kb on - strand, within EX31_RS00375 at 79.430 kb on + strand, within EX31_RS00375 at 79.431 kb on - strand, within EX31_RS00375 at 79.431 kb on - strand, within EX31_RS00375 at 79.436 kb on + strand, within EX31_RS00375 at 79.437 kb on - strand, within EX31_RS00375 at 79.443 kb on - strand, within EX31_RS00375 at 79.458 kb on + strand, within EX31_RS00375 at 79.459 kb on - strand, within EX31_RS00375 at 79.530 kb on + strand, within EX31_RS00375 at 79.533 kb on - strand, within EX31_RS00375 at 79.533 kb on - strand, within EX31_RS00375 at 79.597 kb on + strand, within EX31_RS00375 at 79.597 kb on + strand, within EX31_RS00375 at 79.598 kb on - strand, within EX31_RS00375 at 79.599 kb on + strand, within EX31_RS00375 at 79.599 kb on + strand, within EX31_RS00375 at 79.600 kb on - strand, within EX31_RS00375 at 79.783 kb on + strand, within EX31_RS00375 at 79.783 kb on + strand, within EX31_RS00375 at 79.784 kb on - strand, within EX31_RS00375 at 79.784 kb on - strand, within EX31_RS00375 at 79.784 kb on - strand, within EX31_RS00375 at 79.784 kb on - strand, within EX31_RS00375 at 79.842 kb on + strand, within EX31_RS00375 at 79.842 kb on + strand, within EX31_RS00375 at 79.843 kb on - strand, within EX31_RS00375 at 79.843 kb on - strand, within EX31_RS00375 at 80.006 kb on + strand at 80.006 kb on + strand at 80.006 kb on + strand at 80.006 kb on + strand at 80.007 kb on - strand at 80.007 kb on - strand at 80.007 kb on - strand at 80.027 kb on - strand at 80.027 kb on - strand at 80.186 kb on + strand, within EX31_RS00380 at 80.376 kb on - strand, within EX31_RS00380 at 80.556 kb on - strand, within EX31_RS00380 at 80.595 kb on + strand, within EX31_RS00380 at 80.596 kb on - strand, within EX31_RS00380 at 80.724 kb on + strand at 80.725 kb on - strand at 80.757 kb on + strand at 80.757 kb on + strand at 80.757 kb on + strand at 80.757 kb on + strand at 80.758 kb on - strand at 80.788 kb on + strand at 80.788 kb on + strand at 80.788 kb on + strand at 80.788 kb on + strand at 80.788 kb on + strand at 80.789 kb on - strand at 80.789 kb on - strand at 80.789 kb on - strand at 80.790 kb on + strand at 80.845 kb on + strand at 80.845 kb on + strand at 80.846 kb on - strand at 80.891 kb on - strand, within EX31_RS25885 at 80.900 kb on - strand, within EX31_RS25885 at 80.918 kb on + strand, within EX31_RS25885 at 80.926 kb on + strand, within EX31_RS25885 at 80.926 kb on + strand, within EX31_RS25885 at 80.929 kb on - strand, within EX31_RS25885 at 80.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 78,137 + EX31_RS00365 0.88 +0.7 78,138 - EX31_RS00365 0.88 -0.4 78,185 + +0.3 78,225 + -0.3 78,225 + -0.1 78,462 + EX31_RS00370 0.23 +0.3 78,527 - EX31_RS00370 0.30 -0.1 78,545 + EX31_RS00370 0.32 -0.2 78,566 + EX31_RS00370 0.34 -0.4 78,566 + EX31_RS00370 0.34 +0.8 78,566 + EX31_RS00370 0.34 -0.0 78,763 + EX31_RS00370 0.56 +1.2 78,925 + EX31_RS00370 0.74 -0.0 78,937 + EX31_RS00370 0.75 -0.3 79,024 - EX31_RS00370 0.85 -1.0 79,036 + EX31_RS00370 0.86 -0.7 79,040 + EX31_RS00370 0.87 -0.2 79,040 + EX31_RS00370 0.87 -0.0 79,040 + EX31_RS00370 0.87 -0.8 79,040 + EX31_RS00370 0.87 -0.4 79,040 + EX31_RS00370 0.87 +0.7 79,040 + EX31_RS00370 0.87 +0.9 79,040 + EX31_RS00370 0.87 +0.1 79,040 + EX31_RS00370 0.87 +0.6 79,041 - EX31_RS00370 0.87 +0.7 79,041 - EX31_RS00370 0.87 +0.5 79,041 - EX31_RS00370 0.87 -0.1 79,306 + EX31_RS00375 0.20 +0.6 79,307 - EX31_RS00375 0.20 +0.2 79,307 - EX31_RS00375 0.20 -1.1 79,307 - EX31_RS00375 0.20 -0.1 79,430 + EX31_RS00375 0.34 -2.5 79,431 - EX31_RS00375 0.35 -0.3 79,431 - EX31_RS00375 0.35 -0.1 79,436 + EX31_RS00375 0.35 -0.9 79,437 - EX31_RS00375 0.35 -1.4 79,443 - EX31_RS00375 0.36 -0.7 79,458 + EX31_RS00375 0.38 +0.2 79,459 - EX31_RS00375 0.38 -2.8 79,530 + EX31_RS00375 0.46 -0.0 79,533 - EX31_RS00375 0.46 -0.4 79,533 - EX31_RS00375 0.46 -1.7 79,597 + EX31_RS00375 0.54 -0.3 79,597 + EX31_RS00375 0.54 +0.1 79,598 - EX31_RS00375 0.54 +0.8 79,599 + EX31_RS00375 0.54 -1.0 79,599 + EX31_RS00375 0.54 -0.4 79,600 - EX31_RS00375 0.54 -1.6 79,783 + EX31_RS00375 0.75 +1.1 79,783 + EX31_RS00375 0.75 +2.0 79,784 - EX31_RS00375 0.75 +0.1 79,784 - EX31_RS00375 0.75 -0.2 79,784 - EX31_RS00375 0.75 -0.5 79,784 - EX31_RS00375 0.75 -0.6 79,842 + EX31_RS00375 0.82 +0.5 79,842 + EX31_RS00375 0.82 -1.1 79,843 - EX31_RS00375 0.82 -0.9 79,843 - EX31_RS00375 0.82 +0.7 80,006 + -2.4 80,006 + +0.4 80,006 + +0.2 80,006 + +0.3 80,007 - +1.0 80,007 - -0.0 80,007 - +0.7 80,027 - +0.7 80,027 - -0.4 80,186 + EX31_RS00380 0.21 -0.4 80,376 - EX31_RS00380 0.46 +0.1 80,556 - EX31_RS00380 0.69 +0.5 80,595 + EX31_RS00380 0.74 -1.1 80,596 - EX31_RS00380 0.74 -0.7 80,724 + -0.4 80,725 - -0.1 80,757 + +0.8 80,757 + +0.4 80,757 + +1.2 80,757 + -0.9 80,758 - -0.6 80,788 + -1.6 80,788 + -0.2 80,788 + +0.0 80,788 + +0.1 80,788 + +1.0 80,789 - -0.4 80,789 - -0.1 80,789 - -1.4 80,790 + +1.6 80,845 + -1.1 80,845 + +0.1 80,846 - -1.6 80,891 - EX31_RS25885 0.40 +0.9 80,900 - EX31_RS25885 0.47 +0.7 80,918 + EX31_RS25885 0.60 +1.0 80,926 + EX31_RS25885 0.66 -1.9 80,926 + EX31_RS25885 0.66 -0.3 80,929 - EX31_RS25885 0.68 -0.1 80,992 - -1.5
Or see this region's nucleotide sequence