Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS26100 and EX31_RS20835 are separated by 70 nucleotides EX31_RS20835 and EX31_RS20840 are separated by 36 nucleotides EX31_RS20840 and EX31_RS20845 are separated by 32 nucleotides EX31_RS20845 and EX31_RS25590 overlap by 1 nucleotides EX31_RS25590 and EX31_RS20850 are separated by 13 nucleotides EX31_RS20850 and EX31_RS20855 are separated by 401 nucleotides
EX31_RS26100: EX31_RS26100 - AraC family transcriptional regulator, at 816,260 to 816,334
_RS26100
EX31_RS20835: EX31_RS20835 - NIPSNAP family containing protein, at 816,405 to 816,731
_RS20835
EX31_RS20840: EX31_RS20840 - hypothetical protein, at 816,768 to 816,989
_RS20840
EX31_RS20845: EX31_RS20845 - hypothetical protein, at 817,022 to 817,273
_RS20845
EX31_RS25590: EX31_RS25590 - hypothetical protein, at 817,273 to 817,407
_RS25590
EX31_RS20850: EX31_RS20850 - hypothetical protein, at 817,421 to 817,888
_RS20850
EX31_RS20855: EX31_RS20855 - colicin, at 818,290 to 819,546
_RS20855
Position (kb) 817
818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 816.282 kb on + strand, within EX31_RS26100 at 816.282 kb on + strand, within EX31_RS26100 at 816.283 kb on - strand, within EX31_RS26100 at 816.283 kb on - strand, within EX31_RS26100 at 816.287 kb on - strand, within EX31_RS26100 at 816.339 kb on + strand at 816.339 kb on + strand at 816.339 kb on + strand at 816.340 kb on - strand at 816.373 kb on + strand at 816.389 kb on - strand at 816.390 kb on + strand at 816.398 kb on + strand at 816.399 kb on - strand at 816.429 kb on + strand at 816.429 kb on + strand at 816.430 kb on - strand at 816.430 kb on - strand at 816.430 kb on - strand at 816.436 kb on + strand at 816.437 kb on - strand at 816.555 kb on + strand, within EX31_RS20835 at 816.555 kb on + strand, within EX31_RS20835 at 816.555 kb on + strand, within EX31_RS20835 at 816.556 kb on - strand, within EX31_RS20835 at 816.558 kb on + strand, within EX31_RS20835 at 816.558 kb on + strand, within EX31_RS20835 at 816.558 kb on + strand, within EX31_RS20835 at 816.559 kb on - strand, within EX31_RS20835 at 816.559 kb on - strand, within EX31_RS20835 at 816.559 kb on - strand, within EX31_RS20835 at 816.559 kb on - strand, within EX31_RS20835 at 816.559 kb on - strand, within EX31_RS20835 at 816.615 kb on + strand, within EX31_RS20835 at 816.615 kb on + strand, within EX31_RS20835 at 816.615 kb on + strand, within EX31_RS20835 at 816.615 kb on + strand, within EX31_RS20835 at 816.615 kb on + strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.616 kb on - strand, within EX31_RS20835 at 816.662 kb on + strand, within EX31_RS20835 at 816.662 kb on + strand, within EX31_RS20835 at 816.662 kb on + strand, within EX31_RS20835 at 816.663 kb on - strand, within EX31_RS20835 at 816.680 kb on + strand, within EX31_RS20835 at 816.680 kb on + strand, within EX31_RS20835 at 816.729 kb on + strand at 816.748 kb on + strand at 816.748 kb on + strand at 816.750 kb on + strand at 816.750 kb on + strand at 816.750 kb on + strand at 816.750 kb on + strand at 816.750 kb on + strand at 816.750 kb on + strand at 816.751 kb on - strand at 816.751 kb on - strand at 816.751 kb on - strand at 816.755 kb on + strand at 816.755 kb on + strand at 816.755 kb on + strand at 816.755 kb on + strand at 816.756 kb on - strand at 816.758 kb on + strand at 816.764 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.784 kb on + strand at 816.785 kb on - strand at 816.785 kb on - strand at 816.911 kb on - strand, within EX31_RS20840 at 816.911 kb on - strand, within EX31_RS20840 at 816.914 kb on + strand, within EX31_RS20840 at 816.915 kb on - strand, within EX31_RS20840 at 816.993 kb on + strand at 816.994 kb on - strand at 816.995 kb on + strand at 817.000 kb on + strand at 817.001 kb on - strand at 817.007 kb on + strand at 817.007 kb on + strand at 817.023 kb on + strand at 817.098 kb on - strand, within EX31_RS20845 at 817.114 kb on + strand, within EX31_RS20845 at 817.142 kb on - strand, within EX31_RS20845 at 817.153 kb on + strand, within EX31_RS20845 at 817.154 kb on - strand, within EX31_RS20845 at 817.199 kb on - strand, within EX31_RS20845 at 817.199 kb on - strand, within EX31_RS20845 at 817.215 kb on - strand, within EX31_RS20845 at 817.226 kb on + strand, within EX31_RS20845 at 817.226 kb on + strand, within EX31_RS20845 at 817.261 kb on + strand at 817.261 kb on + strand at 817.262 kb on - strand at 817.262 kb on - strand at 817.275 kb on - strand at 817.342 kb on + strand, within EX31_RS25590 at 817.351 kb on - strand, within EX31_RS25590 at 817.367 kb on + strand, within EX31_RS25590 at 817.368 kb on - strand, within EX31_RS25590 at 817.368 kb on - strand, within EX31_RS25590 at 817.368 kb on - strand, within EX31_RS25590 at 817.403 kb on + strand at 817.403 kb on + strand at 817.404 kb on - strand at 817.482 kb on + strand, within EX31_RS20850 at 817.482 kb on + strand, within EX31_RS20850 at 817.482 kb on + strand, within EX31_RS20850 at 817.483 kb on - strand, within EX31_RS20850 at 817.483 kb on - strand, within EX31_RS20850 at 817.483 kb on - strand, within EX31_RS20850 at 817.483 kb on - strand, within EX31_RS20850 at 817.483 kb on - strand, within EX31_RS20850 at 817.501 kb on + strand, within EX31_RS20850 at 817.502 kb on - strand, within EX31_RS20850 at 817.502 kb on - strand, within EX31_RS20850 at 817.528 kb on - strand, within EX31_RS20850 at 817.559 kb on + strand, within EX31_RS20850 at 817.560 kb on - strand, within EX31_RS20850 at 817.561 kb on + strand, within EX31_RS20850 at 817.561 kb on + strand, within EX31_RS20850 at 817.561 kb on + strand, within EX31_RS20850 at 817.574 kb on + strand, within EX31_RS20850 at 817.575 kb on - strand, within EX31_RS20850 at 817.590 kb on - strand, within EX31_RS20850 at 817.603 kb on + strand, within EX31_RS20850 at 817.604 kb on - strand, within EX31_RS20850 at 817.689 kb on - strand, within EX31_RS20850 at 817.693 kb on + strand, within EX31_RS20850 at 817.693 kb on + strand, within EX31_RS20850 at 817.707 kb on - strand, within EX31_RS20850 at 817.730 kb on - strand, within EX31_RS20850 at 817.759 kb on + strand, within EX31_RS20850 at 817.760 kb on - strand, within EX31_RS20850 at 817.760 kb on - strand, within EX31_RS20850 at 817.849 kb on + strand at 817.881 kb on - strand at 817.892 kb on + strand at 817.893 kb on - strand at 817.908 kb on + strand at 817.912 kb on + strand at 817.918 kb on - strand at 817.948 kb on + strand at 817.949 kb on - strand at 817.973 kb on - strand at 817.986 kb on + strand at 817.987 kb on - strand at 818.039 kb on - strand at 818.053 kb on - strand at 818.066 kb on + strand at 818.067 kb on - strand at 818.067 kb on - strand at 818.067 kb on - strand at 818.097 kb on + strand at 818.106 kb on + strand at 818.106 kb on + strand at 818.106 kb on + strand at 818.107 kb on - strand at 818.107 kb on - strand at 818.128 kb on + strand at 818.128 kb on + strand at 818.129 kb on - strand at 818.137 kb on + strand at 818.145 kb on + strand at 818.146 kb on - strand at 818.152 kb on + strand at 818.152 kb on + strand at 818.163 kb on - strand at 818.164 kb on + strand at 818.164 kb on + strand at 818.165 kb on - strand at 818.178 kb on - strand at 818.178 kb on - strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.205 kb on + strand at 818.206 kb on - strand at 818.206 kb on - strand at 818.206 kb on - strand at 818.255 kb on + strand at 818.255 kb on + strand at 818.255 kb on + strand at 818.256 kb on - strand at 818.256 kb on - strand at 818.257 kb on + strand at 818.290 kb on - strand at 818.297 kb on + strand at 818.297 kb on + strand at 818.297 kb on + strand at 818.301 kb on + strand at 818.302 kb on - strand at 818.302 kb on - strand at 818.302 kb on - strand at 818.302 kb on - strand at 818.304 kb on - strand at 818.304 kb on - strand at 818.304 kb on - strand at 818.342 kb on + strand at 818.342 kb on + strand at 818.342 kb on + strand at 818.342 kb on + strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand at 818.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 816,282 + EX31_RS26100 0.29 -0.7 816,282 + EX31_RS26100 0.29 -0.3 816,283 - EX31_RS26100 0.31 -0.0 816,283 - EX31_RS26100 0.31 -0.6 816,287 - EX31_RS26100 0.36 -1.1 816,339 + +0.8 816,339 + +0.1 816,339 + +0.6 816,340 - -0.6 816,373 + -0.7 816,389 - +0.4 816,390 + +0.3 816,398 + -0.6 816,399 - +1.2 816,429 + -1.4 816,429 + +0.9 816,430 - +0.0 816,430 - +0.9 816,430 - +0.4 816,436 + -0.4 816,437 - -0.7 816,555 + EX31_RS20835 0.46 -0.2 816,555 + EX31_RS20835 0.46 -0.2 816,555 + EX31_RS20835 0.46 +0.1 816,556 - EX31_RS20835 0.46 +0.3 816,558 + EX31_RS20835 0.47 -0.3 816,558 + EX31_RS20835 0.47 +0.7 816,558 + EX31_RS20835 0.47 -0.2 816,559 - EX31_RS20835 0.47 +1.2 816,559 - EX31_RS20835 0.47 -0.7 816,559 - EX31_RS20835 0.47 -0.1 816,559 - EX31_RS20835 0.47 +0.5 816,559 - EX31_RS20835 0.47 +0.2 816,615 + EX31_RS20835 0.64 -0.7 816,615 + EX31_RS20835 0.64 +0.8 816,615 + EX31_RS20835 0.64 -0.0 816,615 + EX31_RS20835 0.64 -1.9 816,615 + EX31_RS20835 0.64 +0.4 816,616 - EX31_RS20835 0.65 +1.3 816,616 - EX31_RS20835 0.65 -0.5 816,616 - EX31_RS20835 0.65 +0.3 816,616 - EX31_RS20835 0.65 +1.0 816,616 - EX31_RS20835 0.65 +0.4 816,616 - EX31_RS20835 0.65 -1.3 816,616 - EX31_RS20835 0.65 +0.4 816,662 + EX31_RS20835 0.79 +1.8 816,662 + EX31_RS20835 0.79 +0.6 816,662 + EX31_RS20835 0.79 -0.6 816,663 - EX31_RS20835 0.79 -1.0 816,680 + EX31_RS20835 0.84 -0.7 816,680 + EX31_RS20835 0.84 -0.5 816,729 + -1.0 816,748 + -0.3 816,748 + +0.8 816,750 + -0.9 816,750 + +0.4 816,750 + +0.2 816,750 + -0.4 816,750 + +0.0 816,750 + +1.4 816,751 - -1.7 816,751 - +1.0 816,751 - +1.0 816,755 + +0.4 816,755 + -0.2 816,755 + +0.5 816,755 + +0.3 816,756 - +1.3 816,758 + -0.8 816,764 + +0.6 816,784 + -0.2 816,784 + +0.2 816,784 + +0.3 816,784 + -1.5 816,785 - -1.0 816,785 - -0.8 816,911 - EX31_RS20840 0.64 -1.9 816,911 - EX31_RS20840 0.64 +0.7 816,914 + EX31_RS20840 0.66 +0.7 816,915 - EX31_RS20840 0.66 -0.5 816,993 + -0.3 816,994 - +0.1 816,995 + -1.3 817,000 + -0.4 817,001 - +0.1 817,007 + -0.2 817,007 + -0.9 817,023 + -0.5 817,098 - EX31_RS20845 0.30 +0.7 817,114 + EX31_RS20845 0.37 +0.6 817,142 - EX31_RS20845 0.48 -0.8 817,153 + EX31_RS20845 0.52 -1.7 817,154 - EX31_RS20845 0.52 +0.3 817,199 - EX31_RS20845 0.70 -0.3 817,199 - EX31_RS20845 0.70 -1.0 817,215 - EX31_RS20845 0.77 -0.3 817,226 + EX31_RS20845 0.81 -1.0 817,226 + EX31_RS20845 0.81 +0.1 817,261 + +0.1 817,261 + -0.1 817,262 - -0.4 817,262 - -0.3 817,275 - +0.9 817,342 + EX31_RS25590 0.51 +0.6 817,351 - EX31_RS25590 0.58 +0.6 817,367 + EX31_RS25590 0.70 +0.4 817,368 - EX31_RS25590 0.70 +0.2 817,368 - EX31_RS25590 0.70 +0.9 817,368 - EX31_RS25590 0.70 -0.3 817,403 + -0.1 817,403 + +0.9 817,404 - +0.6 817,482 + EX31_RS20850 0.13 +0.4 817,482 + EX31_RS20850 0.13 +0.6 817,482 + EX31_RS20850 0.13 +0.8 817,483 - EX31_RS20850 0.13 +0.3 817,483 - EX31_RS20850 0.13 +0.6 817,483 - EX31_RS20850 0.13 +1.1 817,483 - EX31_RS20850 0.13 -0.8 817,483 - EX31_RS20850 0.13 +0.4 817,501 + EX31_RS20850 0.17 -1.2 817,502 - EX31_RS20850 0.17 +0.1 817,502 - EX31_RS20850 0.17 +0.0 817,528 - EX31_RS20850 0.23 -0.0 817,559 + EX31_RS20850 0.29 -1.5 817,560 - EX31_RS20850 0.30 -0.1 817,561 + EX31_RS20850 0.30 -2.1 817,561 + EX31_RS20850 0.30 +0.3 817,561 + EX31_RS20850 0.30 +0.6 817,574 + EX31_RS20850 0.33 +0.5 817,575 - EX31_RS20850 0.33 +0.2 817,590 - EX31_RS20850 0.36 +0.3 817,603 + EX31_RS20850 0.39 -1.1 817,604 - EX31_RS20850 0.39 +0.2 817,689 - EX31_RS20850 0.57 -1.0 817,693 + EX31_RS20850 0.58 +0.6 817,693 + EX31_RS20850 0.58 -0.5 817,707 - EX31_RS20850 0.61 +0.1 817,730 - EX31_RS20850 0.66 +0.3 817,759 + EX31_RS20850 0.72 -0.6 817,760 - EX31_RS20850 0.72 -0.3 817,760 - EX31_RS20850 0.72 +1.0 817,849 + +0.3 817,881 - -1.2 817,892 + -0.5 817,893 - -0.4 817,908 + -0.6 817,912 + +2.0 817,918 - -0.3 817,948 + +0.1 817,949 - +0.2 817,973 - +0.4 817,986 + -0.6 817,987 - -1.1 818,039 - -0.1 818,053 - +0.1 818,066 + +1.2 818,067 - +0.1 818,067 - +0.1 818,067 - +0.3 818,097 + -1.0 818,106 + -1.4 818,106 + +0.4 818,106 + -0.1 818,107 - +0.4 818,107 - +0.0 818,128 + -1.5 818,128 + +0.4 818,129 - +1.0 818,137 + +0.1 818,145 + +0.1 818,146 - -0.8 818,152 + +1.0 818,152 + +0.3 818,163 - -0.1 818,164 + +0.9 818,164 + +1.0 818,165 - -0.9 818,178 - -1.3 818,178 - -0.3 818,205 + -1.7 818,205 + -1.5 818,205 + -0.1 818,205 + -0.4 818,205 + -0.0 818,205 + +0.3 818,205 + -0.1 818,206 - -0.8 818,206 - +0.7 818,206 - -0.2 818,255 + -0.1 818,255 + -2.5 818,255 + -0.3 818,256 - -0.1 818,256 - +0.2 818,257 + +0.4 818,290 - -1.0 818,297 + +1.0 818,297 + -0.1 818,297 + +0.5 818,301 + +0.4 818,302 - -2.3 818,302 - -2.1 818,302 - +0.6 818,302 - -0.2 818,304 - -0.2 818,304 - +1.2 818,304 - +0.2 818,342 + +0.0 818,342 + -0.3 818,342 + +0.0 818,342 + -0.0 818,343 - -0.5 818,343 - +0.0 818,343 - -1.1 818,343 - -1.7 818,343 - +0.5 818,343 - +0.7 818,343 - +0.4 818,343 - +0.7 818,343 - -0.0 818,343 - +0.7 818,343 - +0.4
Or see this region's nucleotide sequence