Strain Fitness in Rahnella sp. WP5 around EX31_RS19315

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19310 and EX31_RS19315 are separated by 0 nucleotidesEX31_RS19315 and EX31_RS19320 are separated by 139 nucleotides EX31_RS19310: EX31_RS19310 - ribonucleotide-diphosphate reductase subunit beta, at 487,548 to 488,678 _RS19310 EX31_RS19315: EX31_RS19315 - 2Fe-2S ferredoxin-like protein, at 488,679 to 488,939 _RS19315 EX31_RS19320: EX31_RS19320 - nicotinamide mononucleotide deamidase-related protein YfaY, at 489,079 to 490,284 _RS19320 Position (kb) 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 487.898 kb on + strand, within EX31_RS19310at 487.914 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.923 kb on - strand, within EX31_RS19310at 487.925 kb on + strand, within EX31_RS19310at 487.931 kb on + strand, within EX31_RS19310at 488.019 kb on + strand, within EX31_RS19310at 488.019 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.047 kb on - strand, within EX31_RS19310at 488.049 kb on + strand, within EX31_RS19310at 488.049 kb on + strand, within EX31_RS19310at 488.050 kb on - strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.102 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.167 kb on + strand, within EX31_RS19310at 488.175 kb on + strand, within EX31_RS19310at 488.176 kb on - strand, within EX31_RS19310at 488.415 kb on + strand, within EX31_RS19310at 488.415 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.479 kb on - strand, within EX31_RS19310at 488.479 kb on - strand, within EX31_RS19310at 488.496 kb on - strand, within EX31_RS19310at 488.616 kb on + strandat 488.617 kb on - strandat 488.623 kb on + strandat 488.676 kb on + strandat 488.676 kb on + strandat 488.729 kb on + strand, within EX31_RS19315at 488.729 kb on + strand, within EX31_RS19315at 488.730 kb on - strand, within EX31_RS19315at 488.787 kb on + strand, within EX31_RS19315at 488.873 kb on + strand, within EX31_RS19315at 488.893 kb on + strand, within EX31_RS19315at 488.893 kb on + strand, within EX31_RS19315at 489.080 kb on + strandat 489.081 kb on - strandat 489.081 kb on - strandat 489.154 kb on - strandat 489.187 kb on + strandat 489.187 kb on + strandat 489.188 kb on - strandat 489.188 kb on - strandat 489.265 kb on + strand, within EX31_RS19320at 489.266 kb on - strand, within EX31_RS19320at 489.481 kb on + strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.745 kb on + strand, within EX31_RS19320at 489.746 kb on - strand, within EX31_RS19320

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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487,898 + EX31_RS19310 0.31 +0.3
487,914 + EX31_RS19310 0.32 -1.7
487,922 + EX31_RS19310 0.33 -0.3
487,922 + EX31_RS19310 0.33 -1.3
487,922 + EX31_RS19310 0.33 -0.3
487,922 + EX31_RS19310 0.33 +0.4
487,922 + EX31_RS19310 0.33 -0.2
487,922 + EX31_RS19310 0.33 -1.2
487,923 - EX31_RS19310 0.33 +0.0
487,925 + EX31_RS19310 0.33 -0.2
487,931 + EX31_RS19310 0.34 -1.4
488,019 + EX31_RS19310 0.42 +0.4
488,019 + EX31_RS19310 0.42 -0.8
488,046 + EX31_RS19310 0.44 -1.1
488,046 + EX31_RS19310 0.44 -0.1
488,046 + EX31_RS19310 0.44 -0.7
488,047 - EX31_RS19310 0.44 -0.1
488,049 + EX31_RS19310 0.44 +0.6
488,049 + EX31_RS19310 0.44 -0.1
488,050 - EX31_RS19310 0.44 +0.3
488,098 + EX31_RS19310 0.49 -0.2
488,098 + EX31_RS19310 0.49 -0.5
488,098 + EX31_RS19310 0.49 -0.4
488,098 + EX31_RS19310 0.49 -2.0
488,098 + EX31_RS19310 0.49 +0.1
488,098 + EX31_RS19310 0.49 -0.2
488,102 + EX31_RS19310 0.49 -0.1
488,117 + EX31_RS19310 0.50 +0.6
488,117 + EX31_RS19310 0.50 -0.8
488,117 + EX31_RS19310 0.50 +0.4
488,117 + EX31_RS19310 0.50 -0.2
488,117 + EX31_RS19310 0.50 -0.4
488,117 + EX31_RS19310 0.50 -0.4
488,117 + EX31_RS19310 0.50 -0.8
488,117 + EX31_RS19310 0.50 -0.4
488,117 + EX31_RS19310 0.50 -0.2
488,130 + EX31_RS19310 0.51 -1.9
488,130 + EX31_RS19310 0.51 +0.0
488,130 + EX31_RS19310 0.51 -0.3
488,130 + EX31_RS19310 0.51 -0.2
488,130 + EX31_RS19310 0.51 +0.1
488,130 + EX31_RS19310 0.51 +0.3
488,130 + EX31_RS19310 0.51 -0.3
488,167 + EX31_RS19310 0.55 -0.2
488,175 + EX31_RS19310 0.55 -1.6
488,176 - EX31_RS19310 0.56 -0.4
488,415 + EX31_RS19310 0.77 +0.1
488,415 + EX31_RS19310 0.77 +0.3
488,469 + EX31_RS19310 0.81 -1.0
488,469 + EX31_RS19310 0.81 +0.9
488,469 + EX31_RS19310 0.81 -0.9
488,469 + EX31_RS19310 0.81 -0.4
488,478 + EX31_RS19310 0.82 -2.1
488,478 + EX31_RS19310 0.82 -0.5
488,478 + EX31_RS19310 0.82 -0.2
488,478 + EX31_RS19310 0.82 -0.5
488,479 - EX31_RS19310 0.82 -0.6
488,479 - EX31_RS19310 0.82 +0.7
488,496 - EX31_RS19310 0.84 -0.8
488,616 + +0.1
488,617 - -2.3
488,623 + -0.2
488,676 + -0.3
488,676 + -0.7
488,729 + EX31_RS19315 0.19 +0.4
488,729 + EX31_RS19315 0.19 -0.2
488,730 - EX31_RS19315 0.20 -0.1
488,787 + EX31_RS19315 0.41 +0.8
488,873 + EX31_RS19315 0.74 +1.7
488,893 + EX31_RS19315 0.82 -0.0
488,893 + EX31_RS19315 0.82 +0.8
489,080 + -0.5
489,081 - -0.1
489,081 - -0.8
489,154 - -0.5
489,187 + +0.1
489,187 + -1.0
489,188 - -0.4
489,188 - +2.6
489,265 + EX31_RS19320 0.15 -0.1
489,266 - EX31_RS19320 0.16 -0.0
489,481 + EX31_RS19320 0.33 +0.5
489,482 - EX31_RS19320 0.33 -0.3
489,482 - EX31_RS19320 0.33 -0.2
489,482 - EX31_RS19320 0.33 -1.9
489,482 - EX31_RS19320 0.33 -1.3
489,745 + EX31_RS19320 0.55 +0.6
489,746 - EX31_RS19320 0.55 +0.3

Or see this region's nucleotide sequence