Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17330 and EX31_RS17335 are separated by 12 nucleotides EX31_RS17335 and EX31_RS17340 are separated by 10 nucleotides EX31_RS17340 and EX31_RS17345 are separated by 212 nucleotides
EX31_RS17330: EX31_RS17330 - Gfo/Idh/MocA family oxidoreductase, at 16,164 to 17,075
_RS17330
EX31_RS17335: EX31_RS17335 - DUF480 domain-containing protein, at 17,088 to 17,747
_RS17335
EX31_RS17340: EX31_RS17340 - ribosomal protein S5-alanine N-acetyltransferase, at 17,758 to 18,345
_RS17340
EX31_RS17345: EX31_RS17345 - multidrug efflux MFS transporter MdtH, at 18,558 to 19,763
_RS17345
Position (kb) 17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 16.126 kb on - strand at 16.126 kb on - strand at 16.127 kb on + strand at 16.128 kb on - strand at 16.128 kb on - strand at 16.128 kb on - strand at 16.202 kb on - strand at 16.298 kb on + strand, within EX31_RS17330 at 16.335 kb on - strand, within EX31_RS17330 at 16.335 kb on - strand, within EX31_RS17330 at 16.378 kb on + strand, within EX31_RS17330 at 16.379 kb on - strand, within EX31_RS17330 at 16.379 kb on - strand, within EX31_RS17330 at 16.486 kb on + strand, within EX31_RS17330 at 16.486 kb on + strand, within EX31_RS17330 at 16.583 kb on - strand, within EX31_RS17330 at 16.583 kb on - strand, within EX31_RS17330 at 16.583 kb on - strand, within EX31_RS17330 at 16.674 kb on - strand, within EX31_RS17330 at 16.804 kb on + strand, within EX31_RS17330 at 16.804 kb on + strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.805 kb on - strand, within EX31_RS17330 at 16.925 kb on + strand, within EX31_RS17330 at 16.926 kb on - strand, within EX31_RS17330 at 16.931 kb on - strand, within EX31_RS17330 at 16.931 kb on - strand, within EX31_RS17330 at 16.931 kb on - strand, within EX31_RS17330 at 17.060 kb on + strand at 17.060 kb on + strand at 17.061 kb on - strand at 17.061 kb on - strand at 17.061 kb on - strand at 17.061 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.065 kb on - strand at 17.130 kb on + strand at 17.131 kb on - strand at 17.265 kb on - strand, within EX31_RS17335 at 17.265 kb on - strand, within EX31_RS17335 at 17.265 kb on - strand, within EX31_RS17335 at 17.265 kb on - strand, within EX31_RS17335 at 17.265 kb on - strand, within EX31_RS17335 at 17.265 kb on - strand, within EX31_RS17335 at 17.267 kb on - strand, within EX31_RS17335 at 17.267 kb on - strand, within EX31_RS17335 at 17.267 kb on - strand, within EX31_RS17335 at 17.391 kb on - strand, within EX31_RS17335 at 17.449 kb on - strand, within EX31_RS17335 at 17.512 kb on + strand, within EX31_RS17335 at 17.512 kb on + strand, within EX31_RS17335 at 17.512 kb on + strand, within EX31_RS17335 at 17.512 kb on + strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.513 kb on - strand, within EX31_RS17335 at 17.522 kb on + strand, within EX31_RS17335 at 17.523 kb on - strand, within EX31_RS17335 at 17.523 kb on - strand, within EX31_RS17335 at 17.556 kb on - strand, within EX31_RS17335 at 17.837 kb on + strand, within EX31_RS17340 at 17.850 kb on - strand, within EX31_RS17340 at 17.912 kb on + strand, within EX31_RS17340 at 17.912 kb on + strand, within EX31_RS17340 at 17.912 kb on + strand, within EX31_RS17340 at 17.912 kb on + strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.913 kb on - strand, within EX31_RS17340 at 17.952 kb on + strand, within EX31_RS17340 at 17.952 kb on + strand, within EX31_RS17340 at 17.953 kb on - strand, within EX31_RS17340 at 17.953 kb on - strand, within EX31_RS17340 at 17.953 kb on - strand, within EX31_RS17340 at 17.955 kb on - strand, within EX31_RS17340 at 17.955 kb on - strand, within EX31_RS17340 at 17.955 kb on - strand, within EX31_RS17340 at 17.955 kb on - strand, within EX31_RS17340 at 17.955 kb on - strand, within EX31_RS17340 at 17.962 kb on - strand, within EX31_RS17340 at 17.995 kb on - strand, within EX31_RS17340 at 17.995 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.117 kb on - strand, within EX31_RS17340 at 18.242 kb on + strand, within EX31_RS17340 at 18.243 kb on - strand, within EX31_RS17340 at 18.243 kb on - strand, within EX31_RS17340 at 18.243 kb on - strand, within EX31_RS17340 at 18.243 kb on - strand, within EX31_RS17340 at 18.245 kb on + strand, within EX31_RS17340 at 18.246 kb on - strand, within EX31_RS17340 at 18.386 kb on + strand at 18.388 kb on + strand at 18.388 kb on + strand at 18.465 kb on + strand at 18.470 kb on - strand at 18.517 kb on + strand at 18.533 kb on + strand at 18.533 kb on + strand at 18.533 kb on + strand at 18.533 kb on + strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.534 kb on - strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.537 kb on + strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.538 kb on - strand at 18.539 kb on + strand at 18.540 kb on - strand at 18.540 kb on - strand at 18.540 kb on - strand at 18.540 kb on - strand at 18.540 kb on - strand at 18.594 kb on + strand at 18.595 kb on - strand at 18.595 kb on - strand at 18.604 kb on + strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.608 kb on - strand at 18.608 kb on - strand at 18.728 kb on + strand, within EX31_RS17345
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 16,126 - -0.4 16,126 - -0.4 16,127 + -0.2 16,128 - +0.5 16,128 - -0.6 16,128 - +0.7 16,202 - +1.2 16,298 + EX31_RS17330 0.15 -2.6 16,335 - EX31_RS17330 0.19 -0.4 16,335 - EX31_RS17330 0.19 +1.9 16,378 + EX31_RS17330 0.23 +1.2 16,379 - EX31_RS17330 0.24 -0.1 16,379 - EX31_RS17330 0.24 -0.1 16,486 + EX31_RS17330 0.35 -0.2 16,486 + EX31_RS17330 0.35 -1.3 16,583 - EX31_RS17330 0.46 -1.0 16,583 - EX31_RS17330 0.46 -0.2 16,583 - EX31_RS17330 0.46 -0.6 16,674 - EX31_RS17330 0.56 -0.2 16,804 + EX31_RS17330 0.70 -0.3 16,804 + EX31_RS17330 0.70 -1.0 16,805 - EX31_RS17330 0.70 -0.3 16,805 - EX31_RS17330 0.70 +0.4 16,805 - EX31_RS17330 0.70 -2.7 16,805 - EX31_RS17330 0.70 +0.9 16,805 - EX31_RS17330 0.70 -0.7 16,805 - EX31_RS17330 0.70 -0.2 16,805 - EX31_RS17330 0.70 +0.1 16,805 - EX31_RS17330 0.70 +0.2 16,805 - EX31_RS17330 0.70 +0.5 16,805 - EX31_RS17330 0.70 +0.6 16,805 - EX31_RS17330 0.70 -0.0 16,805 - EX31_RS17330 0.70 +1.6 16,805 - EX31_RS17330 0.70 +0.8 16,925 + EX31_RS17330 0.83 +2.8 16,926 - EX31_RS17330 0.84 +0.3 16,931 - EX31_RS17330 0.84 +0.0 16,931 - EX31_RS17330 0.84 -0.5 16,931 - EX31_RS17330 0.84 -0.3 17,060 + +0.2 17,060 + +1.2 17,061 - -0.7 17,061 - -0.0 17,061 - +0.4 17,061 - +0.3 17,065 - -1.5 17,065 - +0.2 17,065 - +0.7 17,065 - +0.6 17,065 - +0.2 17,065 - +0.2 17,130 + -1.9 17,131 - -1.6 17,265 - EX31_RS17335 0.27 +0.9 17,265 - EX31_RS17335 0.27 +0.7 17,265 - EX31_RS17335 0.27 +0.5 17,265 - EX31_RS17335 0.27 +0.3 17,265 - EX31_RS17335 0.27 +0.5 17,265 - EX31_RS17335 0.27 +0.8 17,267 - EX31_RS17335 0.27 -0.7 17,267 - EX31_RS17335 0.27 +0.1 17,267 - EX31_RS17335 0.27 -0.8 17,391 - EX31_RS17335 0.46 +0.3 17,449 - EX31_RS17335 0.55 +1.2 17,512 + EX31_RS17335 0.64 +0.8 17,512 + EX31_RS17335 0.64 -0.5 17,512 + EX31_RS17335 0.64 -0.3 17,512 + EX31_RS17335 0.64 -0.0 17,513 - EX31_RS17335 0.64 +0.7 17,513 - EX31_RS17335 0.64 +1.2 17,513 - EX31_RS17335 0.64 +0.3 17,513 - EX31_RS17335 0.64 -0.0 17,513 - EX31_RS17335 0.64 +1.0 17,513 - EX31_RS17335 0.64 +0.2 17,513 - EX31_RS17335 0.64 +1.0 17,513 - EX31_RS17335 0.64 +0.4 17,513 - EX31_RS17335 0.64 -1.4 17,522 + EX31_RS17335 0.66 -0.3 17,523 - EX31_RS17335 0.66 -0.3 17,523 - EX31_RS17335 0.66 -0.2 17,556 - EX31_RS17335 0.71 -0.1 17,837 + EX31_RS17340 0.13 +0.1 17,850 - EX31_RS17340 0.16 +0.3 17,912 + EX31_RS17340 0.26 -2.7 17,912 + EX31_RS17340 0.26 +0.1 17,912 + EX31_RS17340 0.26 -1.0 17,912 + EX31_RS17340 0.26 -1.1 17,913 - EX31_RS17340 0.26 -1.3 17,913 - EX31_RS17340 0.26 +0.0 17,913 - EX31_RS17340 0.26 -0.3 17,913 - EX31_RS17340 0.26 +1.8 17,913 - EX31_RS17340 0.26 -1.3 17,913 - EX31_RS17340 0.26 +1.7 17,952 + EX31_RS17340 0.33 -0.4 17,952 + EX31_RS17340 0.33 -1.9 17,953 - EX31_RS17340 0.33 +0.1 17,953 - EX31_RS17340 0.33 +0.8 17,953 - EX31_RS17340 0.33 +0.2 17,955 - EX31_RS17340 0.34 +0.8 17,955 - EX31_RS17340 0.34 +0.6 17,955 - EX31_RS17340 0.34 +0.3 17,955 - EX31_RS17340 0.34 -0.4 17,955 - EX31_RS17340 0.34 -0.3 17,962 - EX31_RS17340 0.35 +0.6 17,995 - EX31_RS17340 0.40 -0.7 17,995 - EX31_RS17340 0.40 -0.8 18,117 - EX31_RS17340 0.61 +0.5 18,117 - EX31_RS17340 0.61 +0.4 18,117 - EX31_RS17340 0.61 -1.2 18,117 - EX31_RS17340 0.61 -0.7 18,117 - EX31_RS17340 0.61 -0.8 18,117 - EX31_RS17340 0.61 +0.1 18,117 - EX31_RS17340 0.61 -0.2 18,117 - EX31_RS17340 0.61 -0.3 18,242 + EX31_RS17340 0.82 +0.4 18,243 - EX31_RS17340 0.82 -0.7 18,243 - EX31_RS17340 0.82 -1.3 18,243 - EX31_RS17340 0.82 +0.3 18,243 - EX31_RS17340 0.82 -1.5 18,245 + EX31_RS17340 0.83 -0.2 18,246 - EX31_RS17340 0.83 +0.6 18,386 + -0.9 18,388 + -0.5 18,388 + +0.6 18,465 + +0.1 18,470 - -0.9 18,517 + +0.2 18,533 + +0.3 18,533 + +0.2 18,533 + +0.8 18,533 + -0.0 18,534 - +0.3 18,534 - +0.4 18,534 - +0.2 18,534 - -0.9 18,534 - -0.9 18,534 - +1.7 18,534 - -0.4 18,534 - -0.2 18,537 + +0.2 18,537 + -0.6 18,537 + -1.7 18,537 + +1.2 18,537 + +0.2 18,537 + +0.4 18,537 + +0.9 18,537 + +0.0 18,537 + +0.1 18,537 + +0.0 18,538 - +1.2 18,538 - +0.1 18,538 - +0.4 18,538 - -0.8 18,538 - +0.6 18,538 - +0.4 18,538 - -0.3 18,538 - -1.4 18,538 - +0.6 18,538 - -0.5 18,538 - -0.4 18,538 - -0.1 18,538 - -0.5 18,538 - -0.8 18,538 - -0.8 18,538 - +0.4 18,538 - +1.1 18,538 - +0.4 18,538 - -0.6 18,538 - +1.5 18,538 - +0.7 18,538 - -0.3 18,538 - +0.3 18,538 - -0.6 18,538 - +0.5 18,538 - +0.4 18,538 - +0.3 18,538 - +0.4 18,538 - -0.4 18,538 - -1.0 18,538 - +0.6 18,538 - +0.4 18,538 - -0.4 18,538 - -0.0 18,538 - +0.3 18,538 - -0.4 18,538 - -0.6 18,538 - +0.4 18,539 + +0.6 18,540 - +0.6 18,540 - -0.6 18,540 - +0.9 18,540 - -0.3 18,540 - +1.2 18,594 + +1.5 18,595 - +0.3 18,595 - +0.3 18,604 + -0.2 18,605 - -2.7 18,605 - +0.0 18,608 - -0.6 18,608 - -0.8 18,728 + EX31_RS17345 0.14 +0.5
Or see this region's nucleotide sequence