Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15060 and EX31_RS15065 overlap by 4 nucleotides EX31_RS15065 and EX31_RS15070 overlap by 4 nucleotides
EX31_RS15060: EX31_RS15060 - ECA polysaccharide chain length modulation protein, at 28,382 to 29,434
_RS15060
EX31_RS15065: EX31_RS15065 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 29,431 to 30,561
_RS15065
EX31_RS15070: EX31_RS15070 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 30,558 to 31,820
_RS15070
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.450 kb on - strand at 28.450 kb on - strand at 28.485 kb on + strand at 28.485 kb on + strand at 28.518 kb on - strand, within EX31_RS15060 at 28.518 kb on - strand, within EX31_RS15060 at 28.518 kb on - strand, within EX31_RS15060 at 28.564 kb on + strand, within EX31_RS15060 at 28.565 kb on - strand, within EX31_RS15060 at 28.565 kb on - strand, within EX31_RS15060 at 28.565 kb on - strand, within EX31_RS15060 at 28.573 kb on + strand, within EX31_RS15060 at 28.573 kb on + strand, within EX31_RS15060 at 28.573 kb on + strand, within EX31_RS15060 at 28.574 kb on - strand, within EX31_RS15060 at 28.586 kb on + strand, within EX31_RS15060 at 28.586 kb on + strand, within EX31_RS15060 at 28.587 kb on - strand, within EX31_RS15060 at 28.587 kb on - strand, within EX31_RS15060 at 28.612 kb on + strand, within EX31_RS15060 at 28.612 kb on + strand, within EX31_RS15060 at 28.613 kb on - strand, within EX31_RS15060 at 28.627 kb on + strand, within EX31_RS15060 at 28.627 kb on + strand, within EX31_RS15060 at 28.676 kb on + strand, within EX31_RS15060 at 28.676 kb on + strand, within EX31_RS15060 at 28.676 kb on + strand, within EX31_RS15060 at 28.676 kb on + strand, within EX31_RS15060 at 28.677 kb on - strand, within EX31_RS15060 at 28.677 kb on - strand, within EX31_RS15060 at 28.677 kb on - strand, within EX31_RS15060 at 28.706 kb on + strand, within EX31_RS15060 at 28.707 kb on - strand, within EX31_RS15060 at 28.736 kb on - strand, within EX31_RS15060 at 28.736 kb on - strand, within EX31_RS15060 at 28.736 kb on - strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.745 kb on + strand, within EX31_RS15060 at 28.746 kb on - strand, within EX31_RS15060 at 28.746 kb on - strand, within EX31_RS15060 at 28.746 kb on - strand, within EX31_RS15060 at 28.746 kb on - strand, within EX31_RS15060 at 28.820 kb on - strand, within EX31_RS15060 at 28.833 kb on + strand, within EX31_RS15060 at 28.853 kb on - strand, within EX31_RS15060 at 28.888 kb on + strand, within EX31_RS15060 at 28.888 kb on + strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.889 kb on - strand, within EX31_RS15060 at 28.891 kb on + strand, within EX31_RS15060 at 28.892 kb on - strand, within EX31_RS15060 at 28.892 kb on - strand, within EX31_RS15060 at 28.907 kb on + strand, within EX31_RS15060 at 28.907 kb on + strand, within EX31_RS15060 at 28.908 kb on - strand, within EX31_RS15060 at 28.908 kb on - strand, within EX31_RS15060 at 28.908 kb on - strand, within EX31_RS15060 at 28.946 kb on + strand, within EX31_RS15060 at 28.946 kb on + strand, within EX31_RS15060 at 28.946 kb on + strand, within EX31_RS15060 at 28.947 kb on - strand, within EX31_RS15060 at 29.050 kb on + strand, within EX31_RS15060 at 29.050 kb on + strand, within EX31_RS15060 at 29.050 kb on + strand, within EX31_RS15060 at 29.050 kb on + strand, within EX31_RS15060 at 29.053 kb on + strand, within EX31_RS15060 at 29.054 kb on - strand, within EX31_RS15060 at 29.054 kb on - strand, within EX31_RS15060 at 29.054 kb on - strand, within EX31_RS15060 at 29.095 kb on + strand, within EX31_RS15060 at 29.095 kb on + strand, within EX31_RS15060 at 29.095 kb on + strand, within EX31_RS15060 at 29.095 kb on + strand, within EX31_RS15060 at 29.096 kb on - strand, within EX31_RS15060 at 29.128 kb on - strand, within EX31_RS15060 at 29.141 kb on - strand, within EX31_RS15060 at 29.185 kb on - strand, within EX31_RS15060 at 29.185 kb on - strand, within EX31_RS15060 at 29.185 kb on - strand, within EX31_RS15060 at 29.207 kb on + strand, within EX31_RS15060 at 29.219 kb on + strand, within EX31_RS15060 at 29.219 kb on + strand, within EX31_RS15060 at 29.219 kb on + strand, within EX31_RS15060 at 29.220 kb on - strand, within EX31_RS15060 at 29.220 kb on - strand, within EX31_RS15060 at 29.288 kb on + strand, within EX31_RS15060 at 29.288 kb on + strand, within EX31_RS15060 at 29.288 kb on + strand, within EX31_RS15060 at 29.288 kb on + strand, within EX31_RS15060 at 29.288 kb on + strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.289 kb on - strand, within EX31_RS15060 at 29.294 kb on + strand, within EX31_RS15060 at 29.294 kb on + strand, within EX31_RS15060 at 29.347 kb on - strand at 29.347 kb on - strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.356 kb on + strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.357 kb on - strand at 29.523 kb on + strand at 29.524 kb on - strand at 29.567 kb on + strand, within EX31_RS15065 at 29.567 kb on + strand, within EX31_RS15065 at 29.567 kb on + strand, within EX31_RS15065 at 29.664 kb on + strand, within EX31_RS15065 at 29.665 kb on - strand, within EX31_RS15065 at 29.665 kb on - strand, within EX31_RS15065 at 29.716 kb on - strand, within EX31_RS15065 at 29.716 kb on - strand, within EX31_RS15065 at 29.752 kb on + strand, within EX31_RS15065 at 29.752 kb on + strand, within EX31_RS15065 at 29.753 kb on - strand, within EX31_RS15065 at 29.830 kb on - strand, within EX31_RS15065 at 29.830 kb on - strand, within EX31_RS15065 at 29.840 kb on + strand, within EX31_RS15065 at 29.926 kb on - strand, within EX31_RS15065 at 29.926 kb on - strand, within EX31_RS15065 at 29.943 kb on + strand, within EX31_RS15065 at 29.944 kb on - strand, within EX31_RS15065 at 29.985 kb on + strand, within EX31_RS15065 at 29.985 kb on + strand, within EX31_RS15065 at 29.986 kb on - strand, within EX31_RS15065 at 29.986 kb on - strand, within EX31_RS15065 at 30.022 kb on + strand, within EX31_RS15065 at 30.023 kb on - strand, within EX31_RS15065 at 30.146 kb on + strand, within EX31_RS15065 at 30.146 kb on + strand, within EX31_RS15065 at 30.146 kb on + strand, within EX31_RS15065 at 30.222 kb on + strand, within EX31_RS15065 at 30.247 kb on + strand, within EX31_RS15065 at 30.247 kb on + strand, within EX31_RS15065 at 30.262 kb on + strand, within EX31_RS15065 at 30.280 kb on + strand, within EX31_RS15065 at 30.281 kb on - strand, within EX31_RS15065 at 30.409 kb on - strand, within EX31_RS15065 at 30.425 kb on + strand, within EX31_RS15065 at 30.425 kb on + strand, within EX31_RS15065 at 30.466 kb on + strand at 30.466 kb on + strand at 30.466 kb on + strand at 30.466 kb on + strand at 30.466 kb on + strand at 30.467 kb on - strand at 30.467 kb on - strand at 30.497 kb on - strand at 30.566 kb on + strand at 30.571 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.572 kb on + strand at 30.573 kb on - strand at 30.573 kb on - strand at 30.573 kb on - strand at 30.573 kb on - strand at 30.573 kb on - strand at 30.594 kb on + strand at 30.594 kb on + strand at 30.594 kb on + strand at 30.595 kb on - strand at 30.683 kb on + strand at 30.818 kb on + strand, within EX31_RS15070 at 30.818 kb on + strand, within EX31_RS15070 at 30.819 kb on - strand, within EX31_RS15070 at 30.819 kb on - strand, within EX31_RS15070 at 30.819 kb on - strand, within EX31_RS15070 at 30.832 kb on + strand, within EX31_RS15070 at 31.017 kb on - strand, within EX31_RS15070 at 31.024 kb on - strand, within EX31_RS15070 at 31.131 kb on + strand, within EX31_RS15070 at 31.131 kb on + strand, within EX31_RS15070 at 31.132 kb on - strand, within EX31_RS15070 at 31.132 kb on - strand, within EX31_RS15070 at 31.160 kb on + strand, within EX31_RS15070 at 31.160 kb on + strand, within EX31_RS15070 at 31.161 kb on - strand, within EX31_RS15070 at 31.161 kb on - strand, within EX31_RS15070 at 31.161 kb on - strand, within EX31_RS15070 at 31.161 kb on - strand, within EX31_RS15070 at 31.219 kb on + strand, within EX31_RS15070 at 31.219 kb on + strand, within EX31_RS15070 at 31.219 kb on + strand, within EX31_RS15070 at 31.220 kb on - strand, within EX31_RS15070 at 31.235 kb on + strand, within EX31_RS15070 at 31.319 kb on + strand, within EX31_RS15070 at 31.319 kb on + strand, within EX31_RS15070 at 31.319 kb on + strand, within EX31_RS15070 at 31.319 kb on + strand, within EX31_RS15070 at 31.319 kb on + strand, within EX31_RS15070 at 31.355 kb on + strand, within EX31_RS15070 at 31.356 kb on - strand, within EX31_RS15070 at 31.547 kb on + strand, within EX31_RS15070 at 31.556 kb on + strand, within EX31_RS15070
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 28,450 - +1.3 28,450 - +0.4 28,485 + +0.3 28,485 + -0.3 28,518 - EX31_RS15060 0.13 +0.3 28,518 - EX31_RS15060 0.13 +0.4 28,518 - EX31_RS15060 0.13 +0.1 28,564 + EX31_RS15060 0.17 +0.5 28,565 - EX31_RS15060 0.17 +0.3 28,565 - EX31_RS15060 0.17 +0.1 28,565 - EX31_RS15060 0.17 -0.8 28,573 + EX31_RS15060 0.18 -0.3 28,573 + EX31_RS15060 0.18 +0.6 28,573 + EX31_RS15060 0.18 +0.2 28,574 - EX31_RS15060 0.18 +0.3 28,586 + EX31_RS15060 0.19 -1.2 28,586 + EX31_RS15060 0.19 +1.1 28,587 - EX31_RS15060 0.19 -0.8 28,587 - EX31_RS15060 0.19 -0.0 28,612 + EX31_RS15060 0.22 -1.3 28,612 + EX31_RS15060 0.22 -0.0 28,613 - EX31_RS15060 0.22 +0.6 28,627 + EX31_RS15060 0.23 +0.1 28,627 + EX31_RS15060 0.23 -0.6 28,676 + EX31_RS15060 0.28 +0.5 28,676 + EX31_RS15060 0.28 +0.3 28,676 + EX31_RS15060 0.28 -0.3 28,676 + EX31_RS15060 0.28 -2.3 28,677 - EX31_RS15060 0.28 +0.1 28,677 - EX31_RS15060 0.28 +0.0 28,677 - EX31_RS15060 0.28 -2.0 28,706 + EX31_RS15060 0.31 +0.4 28,707 - EX31_RS15060 0.31 +0.1 28,736 - EX31_RS15060 0.34 +0.8 28,736 - EX31_RS15060 0.34 -0.3 28,736 - EX31_RS15060 0.34 +0.0 28,745 + EX31_RS15060 0.34 +0.2 28,745 + EX31_RS15060 0.34 -0.3 28,745 + EX31_RS15060 0.34 -0.2 28,745 + EX31_RS15060 0.34 +0.3 28,745 + EX31_RS15060 0.34 +0.4 28,745 + EX31_RS15060 0.34 +0.4 28,745 + EX31_RS15060 0.34 +0.3 28,745 + EX31_RS15060 0.34 -0.9 28,745 + EX31_RS15060 0.34 -0.2 28,745 + EX31_RS15060 0.34 -0.6 28,745 + EX31_RS15060 0.34 +0.4 28,745 + EX31_RS15060 0.34 +0.4 28,746 - EX31_RS15060 0.35 -0.0 28,746 - EX31_RS15060 0.35 +0.5 28,746 - EX31_RS15060 0.35 +0.6 28,746 - EX31_RS15060 0.35 +0.6 28,820 - EX31_RS15060 0.42 +0.9 28,833 + EX31_RS15060 0.43 +0.6 28,853 - EX31_RS15060 0.45 +0.1 28,888 + EX31_RS15060 0.48 +0.3 28,888 + EX31_RS15060 0.48 -0.9 28,889 - EX31_RS15060 0.48 +0.7 28,889 - EX31_RS15060 0.48 -0.3 28,889 - EX31_RS15060 0.48 -0.1 28,889 - EX31_RS15060 0.48 +1.4 28,889 - EX31_RS15060 0.48 +0.5 28,889 - EX31_RS15060 0.48 +0.8 28,891 + EX31_RS15060 0.48 +0.2 28,892 - EX31_RS15060 0.48 +0.1 28,892 - EX31_RS15060 0.48 +0.2 28,907 + EX31_RS15060 0.50 +0.7 28,907 + EX31_RS15060 0.50 +0.3 28,908 - EX31_RS15060 0.50 -0.5 28,908 - EX31_RS15060 0.50 +0.1 28,908 - EX31_RS15060 0.50 +0.5 28,946 + EX31_RS15060 0.54 +0.2 28,946 + EX31_RS15060 0.54 -0.7 28,946 + EX31_RS15060 0.54 -0.3 28,947 - EX31_RS15060 0.54 +0.4 29,050 + EX31_RS15060 0.63 +0.5 29,050 + EX31_RS15060 0.63 -0.9 29,050 + EX31_RS15060 0.63 +0.3 29,050 + EX31_RS15060 0.63 +1.3 29,053 + EX31_RS15060 0.64 +0.4 29,054 - EX31_RS15060 0.64 -0.3 29,054 - EX31_RS15060 0.64 -1.4 29,054 - EX31_RS15060 0.64 -0.2 29,095 + EX31_RS15060 0.68 -0.4 29,095 + EX31_RS15060 0.68 -2.4 29,095 + EX31_RS15060 0.68 +0.3 29,095 + EX31_RS15060 0.68 -0.5 29,096 - EX31_RS15060 0.68 +0.3 29,128 - EX31_RS15060 0.71 +0.6 29,141 - EX31_RS15060 0.72 +0.3 29,185 - EX31_RS15060 0.76 +0.2 29,185 - EX31_RS15060 0.76 -1.2 29,185 - EX31_RS15060 0.76 +1.0 29,207 + EX31_RS15060 0.78 +0.2 29,219 + EX31_RS15060 0.79 +0.0 29,219 + EX31_RS15060 0.79 -0.3 29,219 + EX31_RS15060 0.79 -0.1 29,220 - EX31_RS15060 0.80 +0.1 29,220 - EX31_RS15060 0.80 +0.4 29,288 + EX31_RS15060 0.86 +0.4 29,288 + EX31_RS15060 0.86 -0.5 29,288 + EX31_RS15060 0.86 +0.8 29,288 + EX31_RS15060 0.86 -0.4 29,288 + EX31_RS15060 0.86 -1.0 29,289 - EX31_RS15060 0.86 +0.1 29,289 - EX31_RS15060 0.86 +0.9 29,289 - EX31_RS15060 0.86 +0.6 29,289 - EX31_RS15060 0.86 +0.2 29,289 - EX31_RS15060 0.86 +0.2 29,289 - EX31_RS15060 0.86 +0.6 29,289 - EX31_RS15060 0.86 +0.7 29,294 + EX31_RS15060 0.87 -0.3 29,294 + EX31_RS15060 0.87 +0.4 29,347 - +0.7 29,347 - +1.2 29,356 + +0.4 29,356 + -0.3 29,356 + +0.4 29,356 + +0.1 29,356 + +0.2 29,356 + -0.4 29,356 + +0.1 29,356 + -0.4 29,356 + -0.2 29,356 + +0.6 29,356 + -0.9 29,357 - -0.2 29,357 - +1.1 29,357 - +0.7 29,357 - -0.1 29,357 - -0.0 29,357 - -0.1 29,357 - +0.5 29,357 - +1.3 29,357 - -1.2 29,523 + +0.4 29,524 - -0.2 29,567 + EX31_RS15065 0.12 +0.8 29,567 + EX31_RS15065 0.12 +0.4 29,567 + EX31_RS15065 0.12 +0.1 29,664 + EX31_RS15065 0.21 +0.4 29,665 - EX31_RS15065 0.21 +0.6 29,665 - EX31_RS15065 0.21 +0.7 29,716 - EX31_RS15065 0.25 +1.0 29,716 - EX31_RS15065 0.25 +0.3 29,752 + EX31_RS15065 0.28 +0.8 29,752 + EX31_RS15065 0.28 +0.6 29,753 - EX31_RS15065 0.28 +0.8 29,830 - EX31_RS15065 0.35 +0.5 29,830 - EX31_RS15065 0.35 +0.6 29,840 + EX31_RS15065 0.36 +0.6 29,926 - EX31_RS15065 0.44 +1.1 29,926 - EX31_RS15065 0.44 +0.4 29,943 + EX31_RS15065 0.45 +0.3 29,944 - EX31_RS15065 0.45 +0.5 29,985 + EX31_RS15065 0.49 +1.1 29,985 + EX31_RS15065 0.49 +0.4 29,986 - EX31_RS15065 0.49 -0.1 29,986 - EX31_RS15065 0.49 +0.5 30,022 + EX31_RS15065 0.52 -0.3 30,023 - EX31_RS15065 0.52 +1.8 30,146 + EX31_RS15065 0.63 +0.6 30,146 + EX31_RS15065 0.63 +0.4 30,146 + EX31_RS15065 0.63 +0.7 30,222 + EX31_RS15065 0.70 +0.8 30,247 + EX31_RS15065 0.72 +0.6 30,247 + EX31_RS15065 0.72 +1.1 30,262 + EX31_RS15065 0.73 +0.4 30,280 + EX31_RS15065 0.75 -0.2 30,281 - EX31_RS15065 0.75 +0.6 30,409 - EX31_RS15065 0.86 +0.7 30,425 + EX31_RS15065 0.88 +0.8 30,425 + EX31_RS15065 0.88 +0.5 30,466 + +0.4 30,466 + +0.6 30,466 + +0.6 30,466 + +0.7 30,466 + +0.5 30,467 - +0.6 30,467 - +0.6 30,497 - -0.4 30,566 + +0.8 30,571 + -0.1 30,572 + +0.6 30,572 + +0.8 30,572 + +1.1 30,572 + +0.1 30,572 + +0.7 30,572 + -2.1 30,572 + +1.0 30,572 + -0.5 30,572 + -1.9 30,573 - -0.3 30,573 - +0.6 30,573 - +0.5 30,573 - +0.3 30,573 - +0.2 30,594 + -0.5 30,594 + -0.1 30,594 + +0.6 30,595 - -0.6 30,683 + +0.3 30,818 + EX31_RS15070 0.21 +0.5 30,818 + EX31_RS15070 0.21 +0.9 30,819 - EX31_RS15070 0.21 +0.5 30,819 - EX31_RS15070 0.21 +0.1 30,819 - EX31_RS15070 0.21 +0.0 30,832 + EX31_RS15070 0.22 -1.2 31,017 - EX31_RS15070 0.36 +0.3 31,024 - EX31_RS15070 0.37 +0.5 31,131 + EX31_RS15070 0.45 +0.9 31,131 + EX31_RS15070 0.45 +0.5 31,132 - EX31_RS15070 0.45 -0.2 31,132 - EX31_RS15070 0.45 -0.2 31,160 + EX31_RS15070 0.48 -0.2 31,160 + EX31_RS15070 0.48 -0.2 31,161 - EX31_RS15070 0.48 +0.8 31,161 - EX31_RS15070 0.48 +0.4 31,161 - EX31_RS15070 0.48 -0.4 31,161 - EX31_RS15070 0.48 -0.6 31,219 + EX31_RS15070 0.52 +0.5 31,219 + EX31_RS15070 0.52 +2.3 31,219 + EX31_RS15070 0.52 +1.0 31,220 - EX31_RS15070 0.52 +0.2 31,235 + EX31_RS15070 0.54 +0.6 31,319 + EX31_RS15070 0.60 +1.4 31,319 + EX31_RS15070 0.60 +0.8 31,319 + EX31_RS15070 0.60 +1.1 31,319 + EX31_RS15070 0.60 +1.1 31,319 + EX31_RS15070 0.60 +0.3 31,355 + EX31_RS15070 0.63 +0.3 31,356 - EX31_RS15070 0.63 +0.3 31,547 + EX31_RS15070 0.78 -0.5 31,556 + EX31_RS15070 0.79 +0.6
Or see this region's nucleotide sequence