Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10455 and EX31_RS10460 are separated by 36 nucleotides EX31_RS10460 and EX31_RS10465 are separated by 408 nucleotides
EX31_RS10455: EX31_RS10455 - filamentous hemagglutinin N-terminal domain-containing protein, at 323 to 3,697
_RS10455
EX31_RS10460: EX31_RS10460 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,734 to 5,458
_RS10460
EX31_RS10465: EX31_RS10465 - DUF481 domain-containing protein, at 5,867 to 6,631
_RS10465
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.819 kb on - strand, within EX31_RS10455 at 2.935 kb on - strand, within EX31_RS10455 at 2.935 kb on - strand, within EX31_RS10455 at 2.935 kb on - strand, within EX31_RS10455 at 2.938 kb on + strand, within EX31_RS10455 at 2.938 kb on + strand, within EX31_RS10455 at 2.939 kb on - strand, within EX31_RS10455 at 3.032 kb on + strand, within EX31_RS10455 at 3.032 kb on + strand, within EX31_RS10455 at 3.032 kb on + strand, within EX31_RS10455 at 3.033 kb on - strand, within EX31_RS10455 at 3.033 kb on - strand, within EX31_RS10455 at 3.264 kb on + strand, within EX31_RS10455 at 3.486 kb on + strand at 3.486 kb on + strand at 3.487 kb on - strand at 3.589 kb on + strand at 3.717 kb on + strand at 3.727 kb on + strand at 3.727 kb on + strand at 3.727 kb on + strand at 3.728 kb on - strand at 3.728 kb on - strand at 3.735 kb on + strand at 3.759 kb on + strand at 3.872 kb on + strand at 3.991 kb on + strand, within EX31_RS10460 at 4.023 kb on + strand, within EX31_RS10460 at 4.023 kb on + strand, within EX31_RS10460 at 4.023 kb on + strand, within EX31_RS10460 at 4.023 kb on + strand, within EX31_RS10460 at 4.024 kb on - strand, within EX31_RS10460 at 4.130 kb on - strand, within EX31_RS10460 at 4.130 kb on - strand, within EX31_RS10460 at 4.155 kb on + strand, within EX31_RS10460 at 4.155 kb on + strand, within EX31_RS10460 at 4.156 kb on - strand, within EX31_RS10460 at 4.156 kb on - strand, within EX31_RS10460 at 4.365 kb on + strand, within EX31_RS10460 at 4.525 kb on - strand, within EX31_RS10460 at 4.530 kb on + strand, within EX31_RS10460 at 4.531 kb on - strand, within EX31_RS10460 at 4.531 kb on - strand, within EX31_RS10460 at 4.557 kb on + strand, within EX31_RS10460 at 4.720 kb on + strand, within EX31_RS10460 at 4.783 kb on - strand, within EX31_RS10460 at 5.030 kb on - strand, within EX31_RS10460 at 5.031 kb on + strand, within EX31_RS10460 at 5.031 kb on + strand, within EX31_RS10460 at 5.031 kb on + strand, within EX31_RS10460 at 5.031 kb on + strand, within EX31_RS10460 at 5.031 kb on + strand, within EX31_RS10460 at 5.032 kb on - strand, within EX31_RS10460 at 5.032 kb on - strand, within EX31_RS10460 at 5.046 kb on + strand, within EX31_RS10460 at 5.047 kb on - strand, within EX31_RS10460 at 5.047 kb on - strand, within EX31_RS10460 at 5.110 kb on - strand, within EX31_RS10460 at 5.146 kb on + strand, within EX31_RS10460 at 5.146 kb on + strand, within EX31_RS10460 at 5.147 kb on - strand, within EX31_RS10460 at 5.147 kb on - strand, within EX31_RS10460 at 5.147 kb on - strand, within EX31_RS10460 at 5.367 kb on - strand at 5.438 kb on - strand at 5.539 kb on - strand at 5.544 kb on + strand at 5.601 kb on - strand at 5.653 kb on - strand at 5.741 kb on + strand at 5.743 kb on + strand at 5.743 kb on + strand at 5.744 kb on - strand at 5.744 kb on - strand at 5.756 kb on + strand at 5.757 kb on - strand at 5.799 kb on - strand at 5.812 kb on - strand at 5.850 kb on + strand at 5.878 kb on - strand at 5.878 kb on - strand at 5.888 kb on + strand at 5.889 kb on - strand at 5.942 kb on - strand at 5.943 kb on + strand at 5.943 kb on + strand at 5.943 kb on + strand at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.944 kb on - strand, within EX31_RS10465 at 5.956 kb on - strand, within EX31_RS10465 at 5.956 kb on - strand, within EX31_RS10465 at 6.020 kb on - strand, within EX31_RS10465 at 6.036 kb on - strand, within EX31_RS10465 at 6.036 kb on - strand, within EX31_RS10465 at 6.088 kb on - strand, within EX31_RS10465 at 6.088 kb on - strand, within EX31_RS10465 at 6.088 kb on - strand, within EX31_RS10465 at 6.088 kb on - strand, within EX31_RS10465 at 6.088 kb on - strand, within EX31_RS10465 at 6.103 kb on - strand, within EX31_RS10465 at 6.181 kb on + strand, within EX31_RS10465 at 6.182 kb on - strand, within EX31_RS10465 at 6.251 kb on - strand, within EX31_RS10465 at 6.251 kb on - strand, within EX31_RS10465 at 6.251 kb on - strand, within EX31_RS10465 at 6.253 kb on - strand, within EX31_RS10465 at 6.253 kb on - strand, within EX31_RS10465 at 6.253 kb on - strand, within EX31_RS10465 at 6.289 kb on - strand, within EX31_RS10465 at 6.289 kb on - strand, within EX31_RS10465 at 6.333 kb on + strand, within EX31_RS10465 at 6.334 kb on - strand, within EX31_RS10465 at 6.334 kb on - strand, within EX31_RS10465 at 6.334 kb on - strand, within EX31_RS10465 at 6.371 kb on - strand, within EX31_RS10465 at 6.395 kb on - strand, within EX31_RS10465
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 2,819 - EX31_RS10455 0.74 +0.6 2,935 - EX31_RS10455 0.77 -0.3 2,935 - EX31_RS10455 0.77 -0.0 2,935 - EX31_RS10455 0.77 -0.6 2,938 + EX31_RS10455 0.77 +0.4 2,938 + EX31_RS10455 0.77 +0.1 2,939 - EX31_RS10455 0.78 -0.5 3,032 + EX31_RS10455 0.80 +1.8 3,032 + EX31_RS10455 0.80 +0.8 3,032 + EX31_RS10455 0.80 +0.2 3,033 - EX31_RS10455 0.80 -0.4 3,033 - EX31_RS10455 0.80 +1.5 3,264 + EX31_RS10455 0.87 +0.7 3,486 + -0.3 3,486 + +0.2 3,487 - +0.2 3,589 + +0.2 3,717 + +0.4 3,727 + +1.7 3,727 + +0.5 3,727 + -1.2 3,728 - -1.2 3,728 - -0.1 3,735 + -0.2 3,759 + +1.4 3,872 + +0.8 3,991 + EX31_RS10460 0.15 +0.6 4,023 + EX31_RS10460 0.17 +0.7 4,023 + EX31_RS10460 0.17 -0.2 4,023 + EX31_RS10460 0.17 +0.9 4,023 + EX31_RS10460 0.17 -1.6 4,024 - EX31_RS10460 0.17 +2.4 4,130 - EX31_RS10460 0.23 +0.9 4,130 - EX31_RS10460 0.23 -0.7 4,155 + EX31_RS10460 0.24 +0.8 4,155 + EX31_RS10460 0.24 +0.6 4,156 - EX31_RS10460 0.24 +1.1 4,156 - EX31_RS10460 0.24 -0.1 4,365 + EX31_RS10460 0.37 +0.7 4,525 - EX31_RS10460 0.46 +0.8 4,530 + EX31_RS10460 0.46 +0.2 4,531 - EX31_RS10460 0.46 +1.4 4,531 - EX31_RS10460 0.46 +1.4 4,557 + EX31_RS10460 0.48 -2.1 4,720 + EX31_RS10460 0.57 +0.5 4,783 - EX31_RS10460 0.61 +0.7 5,030 - EX31_RS10460 0.75 +0.0 5,031 + EX31_RS10460 0.75 +0.2 5,031 + EX31_RS10460 0.75 +0.4 5,031 + EX31_RS10460 0.75 +0.3 5,031 + EX31_RS10460 0.75 -1.2 5,031 + EX31_RS10460 0.75 -0.8 5,032 - EX31_RS10460 0.75 +0.1 5,032 - EX31_RS10460 0.75 +1.3 5,046 + EX31_RS10460 0.76 -1.1 5,047 - EX31_RS10460 0.76 +0.8 5,047 - EX31_RS10460 0.76 +0.3 5,110 - EX31_RS10460 0.80 -0.6 5,146 + EX31_RS10460 0.82 +0.9 5,146 + EX31_RS10460 0.82 +2.3 5,147 - EX31_RS10460 0.82 -0.1 5,147 - EX31_RS10460 0.82 +0.3 5,147 - EX31_RS10460 0.82 +0.4 5,367 - +0.1 5,438 - -1.3 5,539 - +1.5 5,544 + -1.2 5,601 - -2.9 5,653 - -0.7 5,741 + +0.1 5,743 + +0.3 5,743 + -0.1 5,744 - -0.9 5,744 - -0.8 5,756 + +0.3 5,757 - -0.9 5,799 - -1.8 5,812 - +0.1 5,850 + -0.5 5,878 - +0.2 5,878 - -0.6 5,888 + +0.3 5,889 - -0.1 5,942 - +0.1 5,943 + +1.3 5,943 + +1.0 5,943 + -0.4 5,944 - EX31_RS10465 0.10 +0.1 5,944 - EX31_RS10465 0.10 -0.3 5,944 - EX31_RS10465 0.10 -1.1 5,944 - EX31_RS10465 0.10 +0.2 5,944 - EX31_RS10465 0.10 -0.7 5,944 - EX31_RS10465 0.10 +0.1 5,944 - EX31_RS10465 0.10 +0.2 5,944 - EX31_RS10465 0.10 -0.5 5,944 - EX31_RS10465 0.10 -0.3 5,944 - EX31_RS10465 0.10 +0.1 5,944 - EX31_RS10465 0.10 +0.9 5,944 - EX31_RS10465 0.10 +0.2 5,944 - EX31_RS10465 0.10 -0.9 5,944 - EX31_RS10465 0.10 +1.1 5,944 - EX31_RS10465 0.10 -0.1 5,944 - EX31_RS10465 0.10 +1.0 5,944 - EX31_RS10465 0.10 +0.3 5,944 - EX31_RS10465 0.10 +0.5 5,944 - EX31_RS10465 0.10 +0.4 5,944 - EX31_RS10465 0.10 -0.7 5,956 - EX31_RS10465 0.12 +0.3 5,956 - EX31_RS10465 0.12 -0.4 6,020 - EX31_RS10465 0.20 -0.0 6,036 - EX31_RS10465 0.22 +0.3 6,036 - EX31_RS10465 0.22 -0.1 6,088 - EX31_RS10465 0.29 -0.1 6,088 - EX31_RS10465 0.29 +0.6 6,088 - EX31_RS10465 0.29 -0.9 6,088 - EX31_RS10465 0.29 -0.3 6,088 - EX31_RS10465 0.29 -0.1 6,103 - EX31_RS10465 0.31 +0.0 6,181 + EX31_RS10465 0.41 -2.6 6,182 - EX31_RS10465 0.41 +0.2 6,251 - EX31_RS10465 0.50 -0.9 6,251 - EX31_RS10465 0.50 +0.9 6,251 - EX31_RS10465 0.50 -0.6 6,253 - EX31_RS10465 0.50 -0.5 6,253 - EX31_RS10465 0.50 +1.3 6,253 - EX31_RS10465 0.50 -0.6 6,289 - EX31_RS10465 0.55 +0.7 6,289 - EX31_RS10465 0.55 +0.0 6,333 + EX31_RS10465 0.61 -0.9 6,334 - EX31_RS10465 0.61 -0.7 6,334 - EX31_RS10465 0.61 +0.9 6,334 - EX31_RS10465 0.61 -0.0 6,371 - EX31_RS10465 0.66 +0.4 6,395 - EX31_RS10465 0.69 -0.2
Or see this region's nucleotide sequence