Strain Fitness in Rahnella sp. WP5 around EX31_RS10250

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10240 and EX31_RS10245 are separated by 47 nucleotidesEX31_RS10245 and EX31_RS10250 are separated by 28 nucleotidesEX31_RS10250 and EX31_RS10255 are separated by 394 nucleotidesEX31_RS10255 and EX31_RS10260 are separated by 70 nucleotidesEX31_RS10260 and EX31_RS10265 overlap by 4 nucleotides EX31_RS10240: EX31_RS10240 - ABC transporter substrate-binding protein, at 261,164 to 262,744 _RS10240 EX31_RS10245: EX31_RS10245 - D-alanyl-D-alanine dipeptidase, at 262,792 to 263,373 _RS10245 EX31_RS10250: EX31_RS10250 - MurR/RpiR family transcriptional regulator, at 263,402 to 264,274 _RS10250 EX31_RS10255: EX31_RS10255 - tRNA-Asn, at 264,669 to 264,744 _RS10255 EX31_RS10260: EX31_RS10260 - hypothetical protein, at 264,815 to 265,009 _RS10260 EX31_RS10265: EX31_RS10265 - alpha-glucosidase, at 265,006 to 266,664 _RS10265 Position (kb) 263 264 265Strain fitness (log2 ratio) -2 -1 0 1at 262.517 kb on - strand, within EX31_RS10240at 262.537 kb on - strand, within EX31_RS10240at 262.661 kb on + strandat 262.662 kb on - strandat 262.662 kb on - strandat 262.790 kb on - strandat 262.844 kb on + strandat 262.844 kb on + strandat 262.938 kb on + strand, within EX31_RS10245at 262.947 kb on + strand, within EX31_RS10245at 262.947 kb on + strand, within EX31_RS10245at 262.948 kb on - strand, within EX31_RS10245at 262.982 kb on - strand, within EX31_RS10245at 263.102 kb on + strand, within EX31_RS10245at 263.166 kb on - strand, within EX31_RS10245at 263.205 kb on + strand, within EX31_RS10245at 263.206 kb on - strand, within EX31_RS10245at 263.297 kb on + strand, within EX31_RS10245at 263.298 kb on - strand, within EX31_RS10245at 263.368 kb on - strandat 263.463 kb on - strandat 263.570 kb on + strand, within EX31_RS10250at 263.571 kb on - strand, within EX31_RS10250at 263.571 kb on - strand, within EX31_RS10250at 263.604 kb on + strand, within EX31_RS10250at 263.605 kb on - strand, within EX31_RS10250at 263.706 kb on + strand, within EX31_RS10250at 263.706 kb on + strand, within EX31_RS10250at 263.707 kb on - strand, within EX31_RS10250at 263.742 kb on + strand, within EX31_RS10250at 263.742 kb on + strand, within EX31_RS10250at 263.742 kb on + strand, within EX31_RS10250at 263.742 kb on + strand, within EX31_RS10250at 263.742 kb on + strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.743 kb on - strand, within EX31_RS10250at 263.788 kb on - strand, within EX31_RS10250at 263.913 kb on + strand, within EX31_RS10250at 264.328 kb on - strandat 264.328 kb on - strandat 264.359 kb on - strandat 264.359 kb on - strandat 264.453 kb on - strandat 264.505 kb on + strandat 264.550 kb on + strandat 264.745 kb on + strandat 264.745 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.748 kb on + strandat 264.792 kb on + strandat 264.793 kb on - strandat 264.793 kb on - strandat 264.815 kb on - strandat 264.846 kb on + strand, within EX31_RS10260at 264.931 kb on + strand, within EX31_RS10260at 264.977 kb on + strand, within EX31_RS10260at 264.977 kb on + strand, within EX31_RS10260at 264.978 kb on - strand, within EX31_RS10260at 265.008 kb on - strandat 265.017 kb on - strandat 265.067 kb on + strandat 265.067 kb on + strandat 265.067 kb on + strandat 265.068 kb on - strandat 265.068 kb on - strandat 265.072 kb on - strandat 265.079 kb on - strandat 265.177 kb on - strand, within EX31_RS10265at 265.184 kb on + strand, within EX31_RS10265at 265.190 kb on + strand, within EX31_RS10265at 265.190 kb on + strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.191 kb on - strand, within EX31_RS10265at 265.223 kb on + strand, within EX31_RS10265at 265.223 kb on + strand, within EX31_RS10265at 265.224 kb on - strand, within EX31_RS10265at 265.224 kb on - strand, within EX31_RS10265

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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262,517 - EX31_RS10240 0.86 -1.6
262,537 - EX31_RS10240 0.87 +0.2
262,661 + +0.6
262,662 - -0.1
262,662 - -0.3
262,790 - +1.1
262,844 + +0.4
262,844 + +0.5
262,938 + EX31_RS10245 0.25 -2.2
262,947 + EX31_RS10245 0.27 -0.1
262,947 + EX31_RS10245 0.27 -0.5
262,948 - EX31_RS10245 0.27 -0.1
262,982 - EX31_RS10245 0.33 +0.4
263,102 + EX31_RS10245 0.53 -0.4
263,166 - EX31_RS10245 0.64 -0.7
263,205 + EX31_RS10245 0.71 +0.2
263,206 - EX31_RS10245 0.71 +1.1
263,297 + EX31_RS10245 0.87 +0.6
263,298 - EX31_RS10245 0.87 -0.9
263,368 - +0.1
263,463 - -0.7
263,570 + EX31_RS10250 0.19 -0.3
263,571 - EX31_RS10250 0.19 -0.6
263,571 - EX31_RS10250 0.19 +1.3
263,604 + EX31_RS10250 0.23 +0.0
263,605 - EX31_RS10250 0.23 -0.9
263,706 + EX31_RS10250 0.35 +0.5
263,706 + EX31_RS10250 0.35 +0.2
263,707 - EX31_RS10250 0.35 +0.3
263,742 + EX31_RS10250 0.39 +0.5
263,742 + EX31_RS10250 0.39 +0.8
263,742 + EX31_RS10250 0.39 -0.2
263,742 + EX31_RS10250 0.39 +1.7
263,742 + EX31_RS10250 0.39 +0.0
263,743 - EX31_RS10250 0.39 -1.7
263,743 - EX31_RS10250 0.39 +1.7
263,743 - EX31_RS10250 0.39 -0.9
263,743 - EX31_RS10250 0.39 -0.6
263,743 - EX31_RS10250 0.39 +1.4
263,743 - EX31_RS10250 0.39 -0.9
263,743 - EX31_RS10250 0.39 +0.8
263,743 - EX31_RS10250 0.39 +0.7
263,743 - EX31_RS10250 0.39 +0.7
263,788 - EX31_RS10250 0.44 +0.5
263,913 + EX31_RS10250 0.59 +0.8
264,328 - +0.9
264,328 - -0.5
264,359 - -1.3
264,359 - -0.7
264,453 - -0.3
264,505 + -1.8
264,550 + -0.1
264,745 + +0.1
264,745 + +0.5
264,748 + -1.2
264,748 + -0.4
264,748 + +0.5
264,748 + +0.6
264,748 + +0.7
264,748 + +0.6
264,748 + -0.5
264,748 + +0.6
264,748 + -0.4
264,748 + -0.0
264,748 + +0.4
264,748 + +0.2
264,792 + +0.1
264,793 - -0.8
264,793 - +0.9
264,815 - -0.8
264,846 + EX31_RS10260 0.16 +0.7
264,931 + EX31_RS10260 0.59 -0.1
264,977 + EX31_RS10260 0.83 -1.1
264,977 + EX31_RS10260 0.83 +0.0
264,978 - EX31_RS10260 0.84 +0.5
265,008 - -0.4
265,017 - +0.0
265,067 + -1.0
265,067 + +0.3
265,067 + +0.5
265,068 - +1.0
265,068 - -0.6
265,072 - +0.8
265,079 - -1.6
265,177 - EX31_RS10265 0.10 +0.1
265,184 + EX31_RS10265 0.11 +0.9
265,190 + EX31_RS10265 0.11 -0.6
265,190 + EX31_RS10265 0.11 -0.3
265,191 - EX31_RS10265 0.11 -0.5
265,191 - EX31_RS10265 0.11 -0.4
265,191 - EX31_RS10265 0.11 +0.0
265,191 - EX31_RS10265 0.11 +0.2
265,223 + EX31_RS10265 0.13 -1.2
265,223 + EX31_RS10265 0.13 -1.0
265,224 - EX31_RS10265 0.13 +0.3
265,224 - EX31_RS10265 0.13 +1.7

Or see this region's nucleotide sequence