Strain Fitness in Rahnella sp. WP5 around EX31_RS09245

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09240 and EX31_RS09245 are separated by 30 nucleotidesEX31_RS09245 and EX31_RS09250 are separated by 9 nucleotides EX31_RS09240: EX31_RS09240 - D-aminopeptidase, at 46,135 to 47,199 _RS09240 EX31_RS09245: EX31_RS09245 - ABC transporter permease subunit, at 47,230 to 48,141 _RS09245 EX31_RS09250: EX31_RS09250 - ABC transporter permease subunit, at 48,151 to 49,071 _RS09250 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.443 kb on + strand, within EX31_RS09240at 46.565 kb on - strand, within EX31_RS09240at 46.571 kb on - strand, within EX31_RS09240at 46.624 kb on + strand, within EX31_RS09240at 46.625 kb on - strand, within EX31_RS09240at 46.744 kb on - strand, within EX31_RS09240at 46.744 kb on - strand, within EX31_RS09240at 46.748 kb on + strand, within EX31_RS09240at 46.748 kb on + strand, within EX31_RS09240at 46.749 kb on - strand, within EX31_RS09240at 46.749 kb on - strand, within EX31_RS09240at 46.846 kb on + strand, within EX31_RS09240at 46.846 kb on + strand, within EX31_RS09240at 47.228 kb on + strandat 47.229 kb on - strandat 47.231 kb on + strandat 47.232 kb on - strandat 47.283 kb on + strandat 47.284 kb on - strandat 47.355 kb on + strand, within EX31_RS09245at 47.355 kb on + strand, within EX31_RS09245at 47.355 kb on + strand, within EX31_RS09245at 47.356 kb on - strand, within EX31_RS09245at 47.356 kb on - strand, within EX31_RS09245at 47.358 kb on + strand, within EX31_RS09245at 47.446 kb on - strand, within EX31_RS09245at 47.458 kb on - strand, within EX31_RS09245at 47.506 kb on - strand, within EX31_RS09245at 47.586 kb on + strand, within EX31_RS09245at 47.586 kb on + strand, within EX31_RS09245at 47.587 kb on - strand, within EX31_RS09245at 47.714 kb on - strand, within EX31_RS09245at 47.762 kb on + strand, within EX31_RS09245at 47.849 kb on + strand, within EX31_RS09245at 47.849 kb on + strand, within EX31_RS09245at 47.850 kb on - strand, within EX31_RS09245at 47.850 kb on - strand, within EX31_RS09245at 48.076 kb on - strandat 48.111 kb on + strandat 48.433 kb on + strand, within EX31_RS09250at 48.461 kb on + strand, within EX31_RS09250at 48.462 kb on - strand, within EX31_RS09250at 48.552 kb on + strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.553 kb on - strand, within EX31_RS09250at 48.570 kb on + strand, within EX31_RS09250at 48.809 kb on - strand, within EX31_RS09250at 48.809 kb on - strand, within EX31_RS09250at 48.830 kb on + strand, within EX31_RS09250at 48.959 kb on + strand, within EX31_RS09250at 48.960 kb on - strand, within EX31_RS09250at 49.071 kb on + strandat 49.071 kb on + strandat 49.071 kb on + strandat 49.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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46,443 + EX31_RS09240 0.29 -1.5
46,565 - EX31_RS09240 0.40 +1.0
46,571 - EX31_RS09240 0.41 +0.5
46,624 + EX31_RS09240 0.46 +0.8
46,625 - EX31_RS09240 0.46 -0.4
46,744 - EX31_RS09240 0.57 +0.9
46,744 - EX31_RS09240 0.57 -1.1
46,748 + EX31_RS09240 0.58 +0.6
46,748 + EX31_RS09240 0.58 +0.1
46,749 - EX31_RS09240 0.58 +0.6
46,749 - EX31_RS09240 0.58 +0.0
46,846 + EX31_RS09240 0.67 -0.6
46,846 + EX31_RS09240 0.67 -0.6
47,228 + -0.8
47,229 - -0.3
47,231 + -0.5
47,232 - -0.9
47,283 + -0.2
47,284 - +0.4
47,355 + EX31_RS09245 0.14 -0.0
47,355 + EX31_RS09245 0.14 -0.3
47,355 + EX31_RS09245 0.14 +0.4
47,356 - EX31_RS09245 0.14 +0.1
47,356 - EX31_RS09245 0.14 +1.6
47,358 + EX31_RS09245 0.14 +1.8
47,446 - EX31_RS09245 0.24 +1.9
47,458 - EX31_RS09245 0.25 +0.4
47,506 - EX31_RS09245 0.30 -0.6
47,586 + EX31_RS09245 0.39 -2.1
47,586 + EX31_RS09245 0.39 -0.1
47,587 - EX31_RS09245 0.39 +0.0
47,714 - EX31_RS09245 0.53 +0.8
47,762 + EX31_RS09245 0.58 -0.1
47,849 + EX31_RS09245 0.68 +0.2
47,849 + EX31_RS09245 0.68 +0.8
47,850 - EX31_RS09245 0.68 +0.1
47,850 - EX31_RS09245 0.68 -1.0
48,076 - -0.5
48,111 + -0.1
48,433 + EX31_RS09250 0.31 +0.4
48,461 + EX31_RS09250 0.34 +0.1
48,462 - EX31_RS09250 0.34 +1.7
48,552 + EX31_RS09250 0.44 +0.1
48,553 - EX31_RS09250 0.44 -0.2
48,553 - EX31_RS09250 0.44 -0.5
48,553 - EX31_RS09250 0.44 +1.3
48,570 + EX31_RS09250 0.45 +1.3
48,809 - EX31_RS09250 0.71 +0.8
48,809 - EX31_RS09250 0.71 -0.2
48,830 + EX31_RS09250 0.74 +0.6
48,959 + EX31_RS09250 0.88 -0.7
48,960 - EX31_RS09250 0.88 -0.5
49,071 + +0.2
49,071 + -0.6
49,071 + -0.1
49,137 + -0.4

Or see this region's nucleotide sequence