Strain Fitness in Rahnella sp. WP5 around EX31_RS07425

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07420 and EX31_RS07425 are separated by 139 nucleotidesEX31_RS07425 and EX31_RS07430 are separated by 250 nucleotides EX31_RS07420: EX31_RS07420 - bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase, at 297,672 to 298,673 _RS07420 EX31_RS07425: EX31_RS07425 - MurR/RpiR family transcriptional regulator, at 298,813 to 299,664 _RS07425 EX31_RS07430: EX31_RS07430 - transporter substrate-binding domain-containing protein, at 299,915 to 300,751 _RS07430 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1at 298.132 kb on + strand, within EX31_RS07420at 298.137 kb on - strand, within EX31_RS07420at 298.144 kb on + strand, within EX31_RS07420at 298.145 kb on - strand, within EX31_RS07420at 298.147 kb on + strand, within EX31_RS07420at 298.148 kb on - strand, within EX31_RS07420at 298.148 kb on - strand, within EX31_RS07420at 298.148 kb on - strand, within EX31_RS07420at 298.148 kb on - strand, within EX31_RS07420at 298.268 kb on - strand, within EX31_RS07420at 298.268 kb on - strand, within EX31_RS07420at 298.305 kb on - strand, within EX31_RS07420at 298.305 kb on - strand, within EX31_RS07420at 298.305 kb on - strand, within EX31_RS07420at 298.305 kb on - strand, within EX31_RS07420at 298.305 kb on - strand, within EX31_RS07420at 298.349 kb on - strand, within EX31_RS07420at 298.576 kb on + strandat 298.605 kb on - strandat 298.626 kb on - strandat 298.679 kb on + strandat 298.845 kb on + strandat 299.015 kb on - strand, within EX31_RS07425at 299.276 kb on + strand, within EX31_RS07425at 299.277 kb on - strand, within EX31_RS07425at 299.298 kb on - strand, within EX31_RS07425at 299.298 kb on - strand, within EX31_RS07425at 299.391 kb on + strand, within EX31_RS07425at 299.449 kb on + strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.450 kb on - strand, within EX31_RS07425at 299.451 kb on + strand, within EX31_RS07425at 299.452 kb on - strand, within EX31_RS07425at 299.452 kb on - strand, within EX31_RS07425at 299.452 kb on - strand, within EX31_RS07425at 299.485 kb on + strand, within EX31_RS07425at 299.485 kb on + strand, within EX31_RS07425at 299.486 kb on - strand, within EX31_RS07425at 299.521 kb on - strand, within EX31_RS07425at 299.612 kb on - strandat 299.612 kb on - strandat 299.612 kb on - strandat 299.695 kb on + strandat 299.773 kb on + strandat 299.830 kb on + strandat 299.831 kb on - strandat 299.913 kb on + strandat 300.047 kb on + strand, within EX31_RS07430at 300.212 kb on - strand, within EX31_RS07430at 300.488 kb on - strand, within EX31_RS07430at 300.488 kb on - strand, within EX31_RS07430at 300.610 kb on + strand, within EX31_RS07430at 300.611 kb on - strand, within EX31_RS07430at 300.649 kb on + strand, within EX31_RS07430

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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298,132 + EX31_RS07420 0.46 -0.0
298,137 - EX31_RS07420 0.46 +0.9
298,144 + EX31_RS07420 0.47 +0.5
298,145 - EX31_RS07420 0.47 +0.2
298,147 + EX31_RS07420 0.47 -0.3
298,148 - EX31_RS07420 0.48 -1.1
298,148 - EX31_RS07420 0.48 +0.3
298,148 - EX31_RS07420 0.48 -1.5
298,148 - EX31_RS07420 0.48 +0.3
298,268 - EX31_RS07420 0.59 -0.4
298,268 - EX31_RS07420 0.59 +1.3
298,305 - EX31_RS07420 0.63 +0.1
298,305 - EX31_RS07420 0.63 +0.4
298,305 - EX31_RS07420 0.63 +0.2
298,305 - EX31_RS07420 0.63 -0.4
298,305 - EX31_RS07420 0.63 -0.6
298,349 - EX31_RS07420 0.68 +0.7
298,576 + +1.0
298,605 - +0.7
298,626 - +0.2
298,679 + +0.1
298,845 + +0.2
299,015 - EX31_RS07425 0.24 +0.8
299,276 + EX31_RS07425 0.54 +1.5
299,277 - EX31_RS07425 0.54 -0.2
299,298 - EX31_RS07425 0.57 +0.4
299,298 - EX31_RS07425 0.57 +0.3
299,391 + EX31_RS07425 0.68 +0.2
299,449 + EX31_RS07425 0.75 +0.0
299,450 - EX31_RS07425 0.75 -0.1
299,450 - EX31_RS07425 0.75 +0.8
299,450 - EX31_RS07425 0.75 -0.6
299,450 - EX31_RS07425 0.75 +1.0
299,450 - EX31_RS07425 0.75 +0.5
299,450 - EX31_RS07425 0.75 +0.3
299,450 - EX31_RS07425 0.75 +1.6
299,451 + EX31_RS07425 0.75 -1.1
299,452 - EX31_RS07425 0.75 +1.6
299,452 - EX31_RS07425 0.75 +0.9
299,452 - EX31_RS07425 0.75 +0.1
299,485 + EX31_RS07425 0.79 +0.6
299,485 + EX31_RS07425 0.79 -0.9
299,486 - EX31_RS07425 0.79 +0.6
299,521 - EX31_RS07425 0.83 +1.0
299,612 - -0.7
299,612 - +0.0
299,612 - +0.6
299,695 + -1.0
299,773 + -0.3
299,830 + +1.7
299,831 - -1.0
299,913 + +0.2
300,047 + EX31_RS07430 0.16 -0.4
300,212 - EX31_RS07430 0.35 -0.0
300,488 - EX31_RS07430 0.68 -0.4
300,488 - EX31_RS07430 0.68 -0.2
300,610 + EX31_RS07430 0.83 -0.8
300,611 - EX31_RS07430 0.83 +0.8
300,649 + EX31_RS07430 0.88 -2.3

Or see this region's nucleotide sequence