Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06465 and EX31_RS06470 are separated by 76 nucleotides EX31_RS06470 and EX31_RS06475 are separated by 242 nucleotides
EX31_RS06465: EX31_RS06465 - hypothetical protein, at 62,677 to 63,606
_RS06465
EX31_RS06470: EX31_RS06470 - 2-hydroxyacid dehydrogenase, at 63,683 to 64,669
_RS06470
EX31_RS06475: EX31_RS06475 - YdbH family protein, at 64,912 to 67,638
_RS06475
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.824 kb on + strand, within EX31_RS06465 at 62.855 kb on - strand, within EX31_RS06465 at 62.875 kb on - strand, within EX31_RS06465 at 62.901 kb on + strand, within EX31_RS06465 at 62.902 kb on - strand, within EX31_RS06465 at 62.986 kb on + strand, within EX31_RS06465 at 63.084 kb on - strand, within EX31_RS06465 at 63.095 kb on - strand, within EX31_RS06465 at 63.157 kb on + strand, within EX31_RS06465 at 63.158 kb on - strand, within EX31_RS06465 at 63.192 kb on - strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.200 kb on - strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.468 kb on - strand, within EX31_RS06465 at 63.475 kb on - strand, within EX31_RS06465 at 63.484 kb on - strand, within EX31_RS06465 at 63.498 kb on + strand, within EX31_RS06465 at 63.499 kb on - strand, within EX31_RS06465 at 63.634 kb on - strand at 63.658 kb on + strand at 63.658 kb on + strand at 63.658 kb on + strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.660 kb on + strand at 63.660 kb on + strand at 63.660 kb on + strand at 63.660 kb on + strand at 63.660 kb on + strand at 63.660 kb on + strand at 63.661 kb on - strand at 63.661 kb on - strand at 63.676 kb on + strand at 63.677 kb on - strand at 63.727 kb on + strand at 63.891 kb on + strand, within EX31_RS06470 at 64.108 kb on - strand, within EX31_RS06470 at 64.108 kb on - strand, within EX31_RS06470 at 64.108 kb on - strand, within EX31_RS06470 at 64.242 kb on + strand, within EX31_RS06470 at 64.242 kb on + strand, within EX31_RS06470 at 64.242 kb on + strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.243 kb on - strand, within EX31_RS06470 at 64.249 kb on + strand, within EX31_RS06470 at 64.249 kb on + strand, within EX31_RS06470 at 64.299 kb on + strand, within EX31_RS06470 at 64.419 kb on - strand, within EX31_RS06470 at 64.419 kb on - strand, within EX31_RS06470 at 64.419 kb on - strand, within EX31_RS06470 at 64.419 kb on - strand, within EX31_RS06470 at 64.462 kb on + strand, within EX31_RS06470 at 64.463 kb on - strand, within EX31_RS06470 at 64.463 kb on - strand, within EX31_RS06470 at 64.541 kb on + strand, within EX31_RS06470 at 64.653 kb on + strand at 64.654 kb on - strand at 64.724 kb on - strand at 64.732 kb on + strand at 64.732 kb on + strand at 64.758 kb on + strand at 64.758 kb on + strand at 64.771 kb on + strand at 64.772 kb on - strand at 64.798 kb on + strand at 64.808 kb on + strand at 64.809 kb on - strand at 64.809 kb on - strand at 64.809 kb on - strand at 64.853 kb on + strand at 64.854 kb on - strand at 64.854 kb on - strand at 64.854 kb on - strand at 64.854 kb on - strand at 64.858 kb on - strand at 64.858 kb on - strand at 64.863 kb on - strand at 64.877 kb on + strand at 64.878 kb on - strand at 64.887 kb on - strand at 64.887 kb on - strand at 64.887 kb on - strand at 64.896 kb on + strand at 64.896 kb on + strand at 64.896 kb on + strand at 64.953 kb on + strand at 64.953 kb on + strand at 64.953 kb on + strand at 64.953 kb on + strand at 64.954 kb on - strand at 64.955 kb on + strand at 64.955 kb on + strand at 64.955 kb on + strand at 64.955 kb on + strand at 64.955 kb on + strand at 64.956 kb on - strand at 64.956 kb on - strand at 64.965 kb on + strand at 64.968 kb on + strand at 65.167 kb on - strand at 65.273 kb on + strand, within EX31_RS06475 at 65.274 kb on - strand, within EX31_RS06475 at 65.274 kb on - strand, within EX31_RS06475 at 65.274 kb on - strand, within EX31_RS06475 at 65.274 kb on - strand, within EX31_RS06475 at 65.339 kb on - strand, within EX31_RS06475 at 65.339 kb on - strand, within EX31_RS06475 at 65.361 kb on + strand, within EX31_RS06475 at 65.375 kb on + strand, within EX31_RS06475 at 65.376 kb on - strand, within EX31_RS06475 at 65.376 kb on - strand, within EX31_RS06475 at 65.376 kb on - strand, within EX31_RS06475 at 65.598 kb on + strand, within EX31_RS06475 at 65.598 kb on + strand, within EX31_RS06475 at 65.599 kb on - strand, within EX31_RS06475
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 62,824 + EX31_RS06465 0.16 -0.2 62,855 - EX31_RS06465 0.19 +0.3 62,875 - EX31_RS06465 0.21 +0.7 62,901 + EX31_RS06465 0.24 -1.5 62,902 - EX31_RS06465 0.24 +0.9 62,986 + EX31_RS06465 0.33 -2.3 63,084 - EX31_RS06465 0.44 +0.3 63,095 - EX31_RS06465 0.45 +0.3 63,157 + EX31_RS06465 0.52 +0.3 63,158 - EX31_RS06465 0.52 +0.9 63,192 - EX31_RS06465 0.55 -0.1 63,199 + EX31_RS06465 0.56 -1.5 63,199 + EX31_RS06465 0.56 +0.7 63,199 + EX31_RS06465 0.56 +0.6 63,199 + EX31_RS06465 0.56 -0.2 63,199 + EX31_RS06465 0.56 -0.9 63,199 + EX31_RS06465 0.56 -0.1 63,199 + EX31_RS06465 0.56 -0.2 63,199 + EX31_RS06465 0.56 +0.9 63,200 - EX31_RS06465 0.56 -1.0 63,201 + EX31_RS06465 0.56 -0.1 63,201 + EX31_RS06465 0.56 +1.1 63,201 + EX31_RS06465 0.56 -0.3 63,201 + EX31_RS06465 0.56 +0.7 63,201 + EX31_RS06465 0.56 -0.3 63,201 + EX31_RS06465 0.56 +0.6 63,202 - EX31_RS06465 0.56 -0.2 63,202 - EX31_RS06465 0.56 +1.2 63,202 - EX31_RS06465 0.56 -1.6 63,202 - EX31_RS06465 0.56 +0.0 63,202 - EX31_RS06465 0.56 +0.2 63,468 - EX31_RS06465 0.85 -1.4 63,475 - EX31_RS06465 0.86 -0.5 63,484 - EX31_RS06465 0.87 +1.7 63,498 + EX31_RS06465 0.88 +0.1 63,499 - EX31_RS06465 0.88 -0.1 63,634 - -0.4 63,658 + -1.0 63,658 + +1.5 63,658 + +0.2 63,659 - +1.1 63,659 - -0.1 63,659 - +1.2 63,659 - -0.5 63,660 + -0.4 63,660 + -0.3 63,660 + -0.2 63,660 + +1.0 63,660 + +0.9 63,660 + -1.1 63,661 - -1.2 63,661 - +0.4 63,676 + -0.5 63,677 - -0.6 63,727 + +1.4 63,891 + EX31_RS06470 0.21 +1.5 64,108 - EX31_RS06470 0.43 +1.0 64,108 - EX31_RS06470 0.43 +0.6 64,108 - EX31_RS06470 0.43 -1.3 64,242 + EX31_RS06470 0.57 +0.0 64,242 + EX31_RS06470 0.57 -1.1 64,242 + EX31_RS06470 0.57 +0.6 64,243 - EX31_RS06470 0.57 +1.1 64,243 - EX31_RS06470 0.57 +0.7 64,243 - EX31_RS06470 0.57 -0.1 64,243 - EX31_RS06470 0.57 +0.3 64,243 - EX31_RS06470 0.57 +1.7 64,243 - EX31_RS06470 0.57 -1.1 64,243 - EX31_RS06470 0.57 +0.9 64,243 - EX31_RS06470 0.57 +0.4 64,243 - EX31_RS06470 0.57 +0.9 64,243 - EX31_RS06470 0.57 +0.5 64,249 + EX31_RS06470 0.57 -0.0 64,249 + EX31_RS06470 0.57 -0.3 64,299 + EX31_RS06470 0.62 -0.8 64,419 - EX31_RS06470 0.75 -0.8 64,419 - EX31_RS06470 0.75 +0.7 64,419 - EX31_RS06470 0.75 +0.4 64,419 - EX31_RS06470 0.75 -0.7 64,462 + EX31_RS06470 0.79 +1.7 64,463 - EX31_RS06470 0.79 +0.1 64,463 - EX31_RS06470 0.79 +0.9 64,541 + EX31_RS06470 0.87 +0.0 64,653 + -0.5 64,654 - -0.4 64,724 - +0.8 64,732 + +1.2 64,732 + -3.1 64,758 + +0.1 64,758 + +0.0 64,771 + -0.3 64,772 - +1.5 64,798 + -0.0 64,808 + -0.0 64,809 - +0.4 64,809 - +0.5 64,809 - +0.3 64,853 + +0.4 64,854 - +0.7 64,854 - -0.6 64,854 - +1.5 64,854 - -0.2 64,858 - +0.6 64,858 - +0.7 64,863 - -0.5 64,877 + -1.5 64,878 - +0.9 64,887 - +0.6 64,887 - +0.0 64,887 - -0.2 64,896 + -0.3 64,896 + +0.5 64,896 + +0.7 64,953 + -1.5 64,953 + -0.0 64,953 + +0.4 64,953 + -0.1 64,954 - -0.5 64,955 + +0.5 64,955 + -0.5 64,955 + +0.0 64,955 + -0.7 64,955 + +0.7 64,956 - -0.3 64,956 - +1.0 64,965 + +1.1 64,968 + +0.6 65,167 - -0.1 65,273 + EX31_RS06475 0.13 -0.2 65,274 - EX31_RS06475 0.13 -0.2 65,274 - EX31_RS06475 0.13 +0.3 65,274 - EX31_RS06475 0.13 -0.6 65,274 - EX31_RS06475 0.13 +0.3 65,339 - EX31_RS06475 0.16 +0.2 65,339 - EX31_RS06475 0.16 +0.7 65,361 + EX31_RS06475 0.16 -1.6 65,375 + EX31_RS06475 0.17 +0.6 65,376 - EX31_RS06475 0.17 -0.4 65,376 - EX31_RS06475 0.17 +0.3 65,376 - EX31_RS06475 0.17 +0.6 65,598 + EX31_RS06475 0.25 +1.6 65,598 + EX31_RS06475 0.25 -0.2 65,599 - EX31_RS06475 0.25 +0.2
Or see this region's nucleotide sequence