Strain Fitness in Rahnella sp. WP5 around EX31_RS04235

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04230 and EX31_RS04235 are separated by 15 nucleotidesEX31_RS04235 and EX31_RS04240 are separated by 1 nucleotidesEX31_RS04240 and EX31_RS04245 are separated by 103 nucleotides EX31_RS04230: EX31_RS04230 - diguanylate cyclase, at 372,370 to 373,650 _RS04230 EX31_RS04235: EX31_RS04235 - OmpA family protein, at 373,666 to 374,163 _RS04235 EX31_RS04240: EX31_RS04240 - LysR family transcriptional regulator, at 374,165 to 375,037 _RS04240 EX31_RS04245: EX31_RS04245 - acetolactate decarboxylase, at 375,141 to 375,923 _RS04245 Position (kb) 373 374 375Strain fitness (log2 ratio) -1 0 1 2at 372.868 kb on - strand, within EX31_RS04230at 372.868 kb on - strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.961 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.185 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230at 373.474 kb on - strand, within EX31_RS04230at 373.573 kb on + strandat 373.573 kb on + strandat 373.573 kb on + strandat 373.573 kb on + strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.648 kb on + strandat 373.648 kb on + strandat 373.659 kb on - strandat 373.659 kb on - strandat 373.659 kb on - strandat 373.671 kb on + strandat 373.671 kb on + strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.784 kb on + strand, within EX31_RS04235at 373.861 kb on - strand, within EX31_RS04235at 373.861 kb on - strand, within EX31_RS04235at 373.887 kb on + strand, within EX31_RS04235at 373.887 kb on + strand, within EX31_RS04235at 373.888 kb on - strand, within EX31_RS04235at 373.888 kb on - strand, within EX31_RS04235at 373.938 kb on + strand, within EX31_RS04235at 373.959 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.970 kb on - strand, within EX31_RS04235at 373.970 kb on - strand, within EX31_RS04235at 373.984 kb on + strand, within EX31_RS04235at 373.985 kb on - strand, within EX31_RS04235at 373.985 kb on - strand, within EX31_RS04235at 374.106 kb on + strand, within EX31_RS04235at 374.106 kb on + strand, within EX31_RS04235at 374.107 kb on - strand, within EX31_RS04235at 374.107 kb on - strand, within EX31_RS04235at 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.152 kb on - strandat 374.152 kb on - strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.162 kb on - strandat 374.162 kb on - strandat 374.162 kb on - strandat 374.166 kb on + strandat 374.166 kb on + strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.182 kb on + strandat 374.182 kb on + strandat 374.183 kb on - strandat 374.183 kb on - strandat 374.241 kb on - strandat 374.290 kb on + strand, within EX31_RS04240at 374.290 kb on + strand, within EX31_RS04240at 374.290 kb on + strand, within EX31_RS04240at 374.339 kb on - strand, within EX31_RS04240at 374.339 kb on - strand, within EX31_RS04240at 374.353 kb on + strand, within EX31_RS04240at 374.354 kb on - strand, within EX31_RS04240at 374.402 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.650 kb on + strand, within EX31_RS04240at 374.685 kb on + strand, within EX31_RS04240at 374.685 kb on + strand, within EX31_RS04240at 374.686 kb on - strand, within EX31_RS04240at 374.770 kb on + strand, within EX31_RS04240at 374.794 kb on + strand, within EX31_RS04240at 374.794 kb on + strand, within EX31_RS04240at 374.795 kb on - strand, within EX31_RS04240at 374.844 kb on + strand, within EX31_RS04240at 375.056 kb on + strandat 375.057 kb on - strandat 375.068 kb on + strandat 375.068 kb on + strandat 375.068 kb on + strandat 375.068 kb on + strandat 375.068 kb on + strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.069 kb on - strandat 375.071 kb on - strandat 375.071 kb on - strandat 375.104 kb on + strandat 375.105 kb on - strandat 375.105 kb on - strandat 375.109 kb on - strandat 375.109 kb on - strandat 375.121 kb on + strandat 375.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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372,868 - EX31_RS04230 0.39 +0.5
372,868 - EX31_RS04230 0.39 -1.5
372,936 + EX31_RS04230 0.44 -0.2
372,936 + EX31_RS04230 0.44 +0.2
372,936 + EX31_RS04230 0.44 -0.1
372,937 - EX31_RS04230 0.44 +0.3
372,937 - EX31_RS04230 0.44 +0.8
372,960 + EX31_RS04230 0.46 +0.1
372,960 + EX31_RS04230 0.46 +0.0
372,961 - EX31_RS04230 0.46 -0.2
373,096 - EX31_RS04230 0.57 +0.9
373,096 - EX31_RS04230 0.57 +0.2
373,158 + EX31_RS04230 0.62 -0.4
373,158 + EX31_RS04230 0.62 +0.0
373,179 + EX31_RS04230 0.63 +0.3
373,179 + EX31_RS04230 0.63 +0.5
373,179 + EX31_RS04230 0.63 +0.2
373,179 + EX31_RS04230 0.63 +0.1
373,185 + EX31_RS04230 0.64 +0.5
373,254 + EX31_RS04230 0.69 +1.0
373,254 + EX31_RS04230 0.69 +1.1
373,474 - EX31_RS04230 0.86 +0.2
373,573 + +0.3
373,573 + +0.1
373,573 + +0.4
373,573 + -0.4
373,574 - -0.9
373,574 - +1.1
373,574 - +0.6
373,574 - -0.6
373,648 + +0.3
373,648 + -0.2
373,659 - +0.7
373,659 - +1.3
373,659 - +0.2
373,671 + +0.2
373,671 + +0.0
373,672 - +0.3
373,672 - +1.3
373,672 - +0.6
373,672 - -0.8
373,672 - -0.1
373,784 + EX31_RS04235 0.24 +0.4
373,861 - EX31_RS04235 0.39 +0.6
373,861 - EX31_RS04235 0.39 +0.6
373,887 + EX31_RS04235 0.44 +0.2
373,887 + EX31_RS04235 0.44 +0.0
373,888 - EX31_RS04235 0.45 +0.3
373,888 - EX31_RS04235 0.45 -0.2
373,938 + EX31_RS04235 0.55 +0.4
373,959 + EX31_RS04235 0.59 -0.3
373,969 + EX31_RS04235 0.61 +0.0
373,969 + EX31_RS04235 0.61 +0.7
373,969 + EX31_RS04235 0.61 +0.3
373,969 + EX31_RS04235 0.61 -0.3
373,969 + EX31_RS04235 0.61 +1.0
373,970 - EX31_RS04235 0.61 +1.3
373,970 - EX31_RS04235 0.61 +0.4
373,984 + EX31_RS04235 0.64 -0.0
373,985 - EX31_RS04235 0.64 +0.8
373,985 - EX31_RS04235 0.64 +1.3
374,106 + EX31_RS04235 0.88 -0.5
374,106 + EX31_RS04235 0.88 +0.3
374,107 - EX31_RS04235 0.89 +0.9
374,107 - EX31_RS04235 0.89 +0.1
374,151 + +0.6
374,151 + -0.2
374,151 + +0.3
374,151 + +0.6
374,151 + +1.1
374,152 - +0.1
374,152 - -0.2
374,161 + -0.7
374,161 + +0.1
374,161 + -1.6
374,161 + -0.0
374,162 - +0.8
374,162 - +0.2
374,162 - -0.1
374,166 + -0.7
374,166 + +0.2
374,167 - -0.3
374,167 - +0.4
374,167 - +0.8
374,167 - -0.2
374,167 - +0.2
374,167 - +0.8
374,182 + +0.6
374,182 + -0.7
374,183 - +0.6
374,183 - -0.5
374,241 - +0.1
374,290 + EX31_RS04240 0.14 +1.1
374,290 + EX31_RS04240 0.14 -0.4
374,290 + EX31_RS04240 0.14 -0.2
374,339 - EX31_RS04240 0.20 +0.2
374,339 - EX31_RS04240 0.20 +0.4
374,353 + EX31_RS04240 0.22 +0.2
374,354 - EX31_RS04240 0.22 -0.0
374,402 - EX31_RS04240 0.27 +0.0
374,425 - EX31_RS04240 0.30 -0.1
374,425 - EX31_RS04240 0.30 +0.5
374,425 - EX31_RS04240 0.30 -0.5
374,425 - EX31_RS04240 0.30 -0.0
374,425 - EX31_RS04240 0.30 +1.9
374,425 - EX31_RS04240 0.30 +0.1
374,560 + EX31_RS04240 0.45 -0.2
374,560 + EX31_RS04240 0.45 -0.3
374,560 + EX31_RS04240 0.45 -0.1
374,560 + EX31_RS04240 0.45 -0.7
374,560 + EX31_RS04240 0.45 -0.5
374,560 + EX31_RS04240 0.45 +0.9
374,560 + EX31_RS04240 0.45 -0.6
374,560 + EX31_RS04240 0.45 -0.0
374,560 + EX31_RS04240 0.45 +0.3
374,560 + EX31_RS04240 0.45 +0.7
374,560 + EX31_RS04240 0.45 +1.6
374,561 - EX31_RS04240 0.45 +0.7
374,561 - EX31_RS04240 0.45 +0.1
374,561 - EX31_RS04240 0.45 +0.4
374,561 - EX31_RS04240 0.45 -1.1
374,561 - EX31_RS04240 0.45 +0.5
374,561 - EX31_RS04240 0.45 +0.4
374,561 - EX31_RS04240 0.45 +1.0
374,561 - EX31_RS04240 0.45 +0.0
374,561 - EX31_RS04240 0.45 +0.2
374,561 - EX31_RS04240 0.45 +0.6
374,562 + EX31_RS04240 0.45 +0.7
374,562 + EX31_RS04240 0.45 -0.2
374,562 + EX31_RS04240 0.45 -0.7
374,562 + EX31_RS04240 0.45 -0.7
374,563 - EX31_RS04240 0.46 +2.3
374,563 - EX31_RS04240 0.46 -0.9
374,563 - EX31_RS04240 0.46 +0.7
374,563 - EX31_RS04240 0.46 -0.3
374,650 + EX31_RS04240 0.56 +0.2
374,685 + EX31_RS04240 0.60 +0.1
374,685 + EX31_RS04240 0.60 +1.0
374,686 - EX31_RS04240 0.60 +0.6
374,770 + EX31_RS04240 0.69 -0.0
374,794 + EX31_RS04240 0.72 -0.2
374,794 + EX31_RS04240 0.72 +0.1
374,795 - EX31_RS04240 0.72 +0.1
374,844 + EX31_RS04240 0.78 -0.7
375,056 + +0.3
375,057 - +0.2
375,068 + +0.4
375,068 + +0.4
375,068 + -0.9
375,068 + -0.8
375,068 + -0.6
375,069 - +1.1
375,069 - +0.3
375,069 - +0.5
375,069 - +0.2
375,069 - -0.6
375,069 - -0.5
375,069 - +0.8
375,069 - -0.5
375,069 - +1.3
375,071 - -1.3
375,071 - -0.3
375,104 + +0.3
375,105 - -0.4
375,105 - +0.8
375,109 - +0.0
375,109 - -0.2
375,121 + -0.8
375,121 + -0.6

Or see this region's nucleotide sequence