Strain Fitness in Rahnella sp. WP5 around EX31_RS04230

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04225 and EX31_RS04230 are separated by 2 nucleotidesEX31_RS04230 and EX31_RS04235 are separated by 15 nucleotidesEX31_RS04235 and EX31_RS04240 are separated by 1 nucleotides EX31_RS04225: EX31_RS04225 - YfiR family protein, at 371,669 to 372,367 _RS04225 EX31_RS04230: EX31_RS04230 - diguanylate cyclase, at 372,370 to 373,650 _RS04230 EX31_RS04235: EX31_RS04235 - OmpA family protein, at 373,666 to 374,163 _RS04235 EX31_RS04240: EX31_RS04240 - LysR family transcriptional regulator, at 374,165 to 375,037 _RS04240 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 371.377 kb on + strandat 371.379 kb on + strandat 371.419 kb on - strandat 371.598 kb on + strandat 371.696 kb on - strandat 371.728 kb on + strandat 371.729 kb on - strandat 371.729 kb on - strandat 371.735 kb on - strandat 371.735 kb on - strandat 371.804 kb on + strand, within EX31_RS04225at 371.804 kb on + strand, within EX31_RS04225at 371.805 kb on - strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.820 kb on + strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.821 kb on - strand, within EX31_RS04225at 371.957 kb on - strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.028 kb on + strand, within EX31_RS04225at 372.029 kb on - strand, within EX31_RS04225at 372.140 kb on + strand, within EX31_RS04225at 372.140 kb on + strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.141 kb on - strand, within EX31_RS04225at 372.177 kb on + strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.178 kb on - strand, within EX31_RS04225at 372.240 kb on + strand, within EX31_RS04225at 372.240 kb on + strand, within EX31_RS04225at 372.241 kb on - strand, within EX31_RS04225at 372.340 kb on - strandat 372.340 kb on - strandat 372.342 kb on + strandat 372.342 kb on + strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.343 kb on - strandat 372.365 kb on + strandat 372.365 kb on + strandat 372.365 kb on + strandat 372.379 kb on - strandat 372.491 kb on + strandat 372.568 kb on + strand, within EX31_RS04230at 372.568 kb on + strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.569 kb on - strand, within EX31_RS04230at 372.595 kb on - strand, within EX31_RS04230at 372.595 kb on - strand, within EX31_RS04230at 372.661 kb on - strand, within EX31_RS04230at 372.868 kb on - strand, within EX31_RS04230at 372.868 kb on - strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.936 kb on + strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.937 kb on - strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.960 kb on + strand, within EX31_RS04230at 372.961 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.096 kb on - strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.158 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.179 kb on + strand, within EX31_RS04230at 373.185 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230at 373.254 kb on + strand, within EX31_RS04230at 373.474 kb on - strand, within EX31_RS04230at 373.573 kb on + strandat 373.573 kb on + strandat 373.573 kb on + strandat 373.573 kb on + strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.574 kb on - strandat 373.648 kb on + strandat 373.648 kb on + strandat 373.659 kb on - strandat 373.659 kb on - strandat 373.659 kb on - strandat 373.671 kb on + strandat 373.671 kb on + strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.672 kb on - strandat 373.784 kb on + strand, within EX31_RS04235at 373.861 kb on - strand, within EX31_RS04235at 373.861 kb on - strand, within EX31_RS04235at 373.887 kb on + strand, within EX31_RS04235at 373.887 kb on + strand, within EX31_RS04235at 373.888 kb on - strand, within EX31_RS04235at 373.888 kb on - strand, within EX31_RS04235at 373.938 kb on + strand, within EX31_RS04235at 373.959 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.969 kb on + strand, within EX31_RS04235at 373.970 kb on - strand, within EX31_RS04235at 373.970 kb on - strand, within EX31_RS04235at 373.984 kb on + strand, within EX31_RS04235at 373.985 kb on - strand, within EX31_RS04235at 373.985 kb on - strand, within EX31_RS04235at 374.106 kb on + strand, within EX31_RS04235at 374.106 kb on + strand, within EX31_RS04235at 374.107 kb on - strand, within EX31_RS04235at 374.107 kb on - strand, within EX31_RS04235at 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.151 kb on + strandat 374.152 kb on - strandat 374.152 kb on - strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.161 kb on + strandat 374.162 kb on - strandat 374.162 kb on - strandat 374.162 kb on - strandat 374.166 kb on + strandat 374.166 kb on + strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.167 kb on - strandat 374.182 kb on + strandat 374.182 kb on + strandat 374.183 kb on - strandat 374.183 kb on - strandat 374.241 kb on - strandat 374.290 kb on + strand, within EX31_RS04240at 374.290 kb on + strand, within EX31_RS04240at 374.290 kb on + strand, within EX31_RS04240at 374.339 kb on - strand, within EX31_RS04240at 374.339 kb on - strand, within EX31_RS04240at 374.353 kb on + strand, within EX31_RS04240at 374.354 kb on - strand, within EX31_RS04240at 374.402 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.425 kb on - strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.560 kb on + strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.561 kb on - strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.562 kb on + strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.563 kb on - strand, within EX31_RS04240at 374.650 kb on + strand, within EX31_RS04240

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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371,377 + -0.3
371,379 + -1.9
371,419 - +0.2
371,598 + -0.4
371,696 - +0.0
371,728 + -0.6
371,729 - +0.6
371,729 - +0.1
371,735 - +1.3
371,735 - +0.1
371,804 + EX31_RS04225 0.19 -1.5
371,804 + EX31_RS04225 0.19 +0.5
371,805 - EX31_RS04225 0.19 +0.1
371,820 + EX31_RS04225 0.22 -0.5
371,820 + EX31_RS04225 0.22 +0.3
371,820 + EX31_RS04225 0.22 +0.6
371,820 + EX31_RS04225 0.22 +0.3
371,821 - EX31_RS04225 0.22 -0.6
371,821 - EX31_RS04225 0.22 +0.4
371,821 - EX31_RS04225 0.22 -0.7
371,957 - EX31_RS04225 0.41 -0.6
372,028 + EX31_RS04225 0.51 -0.7
372,028 + EX31_RS04225 0.51 -0.4
372,028 + EX31_RS04225 0.51 -3.0
372,028 + EX31_RS04225 0.51 -1.4
372,028 + EX31_RS04225 0.51 -1.4
372,029 - EX31_RS04225 0.52 -0.1
372,140 + EX31_RS04225 0.67 -0.7
372,140 + EX31_RS04225 0.67 -0.8
372,141 - EX31_RS04225 0.68 -0.1
372,141 - EX31_RS04225 0.68 +0.3
372,141 - EX31_RS04225 0.68 +0.6
372,177 + EX31_RS04225 0.73 -1.7
372,178 - EX31_RS04225 0.73 -1.6
372,178 - EX31_RS04225 0.73 +0.5
372,178 - EX31_RS04225 0.73 +0.1
372,240 + EX31_RS04225 0.82 -1.4
372,240 + EX31_RS04225 0.82 +0.2
372,241 - EX31_RS04225 0.82 +0.5
372,340 - -0.4
372,340 - +0.4
372,342 + -1.0
372,342 + -2.0
372,343 - -0.9
372,343 - -0.0
372,343 - +0.4
372,343 - -0.4
372,343 - +1.3
372,343 - +0.5
372,365 + -0.2
372,365 + +0.2
372,365 + -0.9
372,379 - +0.5
372,491 + +0.8
372,568 + EX31_RS04230 0.15 -0.0
372,568 + EX31_RS04230 0.15 +1.8
372,569 - EX31_RS04230 0.16 +1.3
372,569 - EX31_RS04230 0.16 -0.0
372,569 - EX31_RS04230 0.16 +1.2
372,569 - EX31_RS04230 0.16 -0.2
372,569 - EX31_RS04230 0.16 +0.8
372,595 - EX31_RS04230 0.18 -0.1
372,595 - EX31_RS04230 0.18 -0.6
372,661 - EX31_RS04230 0.23 +1.4
372,868 - EX31_RS04230 0.39 +0.5
372,868 - EX31_RS04230 0.39 -1.5
372,936 + EX31_RS04230 0.44 -0.2
372,936 + EX31_RS04230 0.44 +0.2
372,936 + EX31_RS04230 0.44 -0.1
372,937 - EX31_RS04230 0.44 +0.3
372,937 - EX31_RS04230 0.44 +0.8
372,960 + EX31_RS04230 0.46 +0.1
372,960 + EX31_RS04230 0.46 +0.0
372,961 - EX31_RS04230 0.46 -0.2
373,096 - EX31_RS04230 0.57 +0.9
373,096 - EX31_RS04230 0.57 +0.2
373,158 + EX31_RS04230 0.62 -0.4
373,158 + EX31_RS04230 0.62 +0.0
373,179 + EX31_RS04230 0.63 +0.3
373,179 + EX31_RS04230 0.63 +0.5
373,179 + EX31_RS04230 0.63 +0.2
373,179 + EX31_RS04230 0.63 +0.1
373,185 + EX31_RS04230 0.64 +0.5
373,254 + EX31_RS04230 0.69 +1.0
373,254 + EX31_RS04230 0.69 +1.1
373,474 - EX31_RS04230 0.86 +0.2
373,573 + +0.3
373,573 + +0.1
373,573 + +0.4
373,573 + -0.4
373,574 - -0.9
373,574 - +1.1
373,574 - +0.6
373,574 - -0.6
373,648 + +0.3
373,648 + -0.2
373,659 - +0.7
373,659 - +1.3
373,659 - +0.2
373,671 + +0.2
373,671 + +0.0
373,672 - +0.3
373,672 - +1.3
373,672 - +0.6
373,672 - -0.8
373,672 - -0.1
373,784 + EX31_RS04235 0.24 +0.4
373,861 - EX31_RS04235 0.39 +0.6
373,861 - EX31_RS04235 0.39 +0.6
373,887 + EX31_RS04235 0.44 +0.2
373,887 + EX31_RS04235 0.44 +0.0
373,888 - EX31_RS04235 0.45 +0.3
373,888 - EX31_RS04235 0.45 -0.2
373,938 + EX31_RS04235 0.55 +0.4
373,959 + EX31_RS04235 0.59 -0.3
373,969 + EX31_RS04235 0.61 +0.0
373,969 + EX31_RS04235 0.61 +0.7
373,969 + EX31_RS04235 0.61 +0.3
373,969 + EX31_RS04235 0.61 -0.3
373,969 + EX31_RS04235 0.61 +1.0
373,970 - EX31_RS04235 0.61 +1.3
373,970 - EX31_RS04235 0.61 +0.4
373,984 + EX31_RS04235 0.64 -0.0
373,985 - EX31_RS04235 0.64 +0.8
373,985 - EX31_RS04235 0.64 +1.3
374,106 + EX31_RS04235 0.88 -0.5
374,106 + EX31_RS04235 0.88 +0.3
374,107 - EX31_RS04235 0.89 +0.9
374,107 - EX31_RS04235 0.89 +0.1
374,151 + +0.6
374,151 + -0.2
374,151 + +0.3
374,151 + +0.6
374,151 + +1.1
374,152 - +0.1
374,152 - -0.2
374,161 + -0.7
374,161 + +0.1
374,161 + -1.6
374,161 + -0.0
374,162 - +0.8
374,162 - +0.2
374,162 - -0.1
374,166 + -0.7
374,166 + +0.2
374,167 - -0.3
374,167 - +0.4
374,167 - +0.8
374,167 - -0.2
374,167 - +0.2
374,167 - +0.8
374,182 + +0.6
374,182 + -0.7
374,183 - +0.6
374,183 - -0.5
374,241 - +0.1
374,290 + EX31_RS04240 0.14 +1.1
374,290 + EX31_RS04240 0.14 -0.4
374,290 + EX31_RS04240 0.14 -0.2
374,339 - EX31_RS04240 0.20 +0.2
374,339 - EX31_RS04240 0.20 +0.4
374,353 + EX31_RS04240 0.22 +0.2
374,354 - EX31_RS04240 0.22 -0.0
374,402 - EX31_RS04240 0.27 +0.0
374,425 - EX31_RS04240 0.30 -0.1
374,425 - EX31_RS04240 0.30 +0.5
374,425 - EX31_RS04240 0.30 -0.5
374,425 - EX31_RS04240 0.30 -0.0
374,425 - EX31_RS04240 0.30 +1.9
374,425 - EX31_RS04240 0.30 +0.1
374,560 + EX31_RS04240 0.45 -0.2
374,560 + EX31_RS04240 0.45 -0.3
374,560 + EX31_RS04240 0.45 -0.1
374,560 + EX31_RS04240 0.45 -0.7
374,560 + EX31_RS04240 0.45 -0.5
374,560 + EX31_RS04240 0.45 +0.9
374,560 + EX31_RS04240 0.45 -0.6
374,560 + EX31_RS04240 0.45 -0.0
374,560 + EX31_RS04240 0.45 +0.3
374,560 + EX31_RS04240 0.45 +0.7
374,560 + EX31_RS04240 0.45 +1.6
374,561 - EX31_RS04240 0.45 +0.7
374,561 - EX31_RS04240 0.45 +0.1
374,561 - EX31_RS04240 0.45 +0.4
374,561 - EX31_RS04240 0.45 -1.1
374,561 - EX31_RS04240 0.45 +0.5
374,561 - EX31_RS04240 0.45 +0.4
374,561 - EX31_RS04240 0.45 +1.0
374,561 - EX31_RS04240 0.45 +0.0
374,561 - EX31_RS04240 0.45 +0.2
374,561 - EX31_RS04240 0.45 +0.6
374,562 + EX31_RS04240 0.45 +0.7
374,562 + EX31_RS04240 0.45 -0.2
374,562 + EX31_RS04240 0.45 -0.7
374,562 + EX31_RS04240 0.45 -0.7
374,563 - EX31_RS04240 0.46 +2.3
374,563 - EX31_RS04240 0.46 -0.9
374,563 - EX31_RS04240 0.46 +0.7
374,563 - EX31_RS04240 0.46 -0.3
374,650 + EX31_RS04240 0.56 +0.2

Or see this region's nucleotide sequence