Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01330 and EX31_RS01335 are separated by 68 nucleotides EX31_RS01335 and EX31_RS01340 are separated by 86 nucleotides
EX31_RS01330: EX31_RS01330 - porin, at 296,495 to 297,175
_RS01330
EX31_RS01335: EX31_RS01335 - right-handed parallel beta-helix repeat-containing protein, at 297,244 to 299,412
_RS01335
EX31_RS01340: EX31_RS01340 - MFS transporter, at 299,499 to 301,064
_RS01340
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -1
0
1
2
3 at 296.253 kb on - strand at 296.253 kb on - strand at 296.259 kb on - strand at 296.259 kb on - strand at 296.298 kb on - strand at 296.325 kb on - strand at 296.325 kb on - strand at 296.325 kb on - strand at 296.329 kb on - strand at 296.335 kb on - strand at 296.348 kb on - strand at 296.380 kb on + strand at 296.408 kb on - strand at 296.411 kb on - strand at 296.411 kb on - strand at 296.605 kb on + strand, within EX31_RS01330 at 296.608 kb on - strand, within EX31_RS01330 at 296.619 kb on - strand, within EX31_RS01330 at 296.682 kb on + strand, within EX31_RS01330 at 296.773 kb on - strand, within EX31_RS01330 at 296.827 kb on + strand, within EX31_RS01330 at 296.828 kb on - strand, within EX31_RS01330 at 296.853 kb on + strand, within EX31_RS01330 at 296.854 kb on - strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330 at 297.067 kb on + strand, within EX31_RS01330 at 297.386 kb on + strand at 297.463 kb on - strand, within EX31_RS01335 at 297.491 kb on + strand, within EX31_RS01335 at 297.889 kb on - strand, within EX31_RS01335 at 297.978 kb on + strand, within EX31_RS01335 at 297.986 kb on + strand, within EX31_RS01335 at 297.986 kb on + strand, within EX31_RS01335 at 297.986 kb on + strand, within EX31_RS01335 at 297.987 kb on - strand, within EX31_RS01335 at 297.987 kb on - strand, within EX31_RS01335 at 297.987 kb on - strand, within EX31_RS01335 at 297.987 kb on - strand, within EX31_RS01335 at 298.000 kb on - strand, within EX31_RS01335 at 298.023 kb on + strand, within EX31_RS01335 at 298.075 kb on + strand, within EX31_RS01335 at 298.154 kb on + strand, within EX31_RS01335 at 298.192 kb on + strand, within EX31_RS01335 at 298.213 kb on - strand, within EX31_RS01335 at 298.271 kb on + strand, within EX31_RS01335 at 298.271 kb on + strand, within EX31_RS01335 at 298.272 kb on - strand, within EX31_RS01335 at 298.272 kb on - strand, within EX31_RS01335 at 298.272 kb on - strand, within EX31_RS01335 at 298.302 kb on + strand, within EX31_RS01335 at 298.349 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.482 kb on + strand, within EX31_RS01335 at 298.486 kb on + strand, within EX31_RS01335 at 298.618 kb on + strand, within EX31_RS01335 at 298.658 kb on + strand, within EX31_RS01335 at 298.658 kb on + strand, within EX31_RS01335 at 298.659 kb on - strand, within EX31_RS01335 at 298.659 kb on - strand, within EX31_RS01335 at 298.659 kb on - strand, within EX31_RS01335 at 298.814 kb on + strand, within EX31_RS01335 at 298.815 kb on - strand, within EX31_RS01335 at 298.842 kb on + strand, within EX31_RS01335 at 298.932 kb on + strand, within EX31_RS01335 at 298.933 kb on - strand, within EX31_RS01335 at 299.005 kb on + strand, within EX31_RS01335 at 299.120 kb on + strand, within EX31_RS01335 at 299.126 kb on + strand, within EX31_RS01335 at 299.126 kb on + strand, within EX31_RS01335 at 299.126 kb on + strand, within EX31_RS01335 at 299.127 kb on - strand, within EX31_RS01335 at 299.412 kb on + strand at 299.412 kb on + strand at 299.412 kb on + strand at 299.412 kb on + strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.413 kb on - strand at 299.501 kb on - strand at 299.558 kb on + strand at 299.640 kb on + strand at 299.641 kb on - strand at 299.681 kb on + strand, within EX31_RS01340 at 299.682 kb on - strand, within EX31_RS01340 at 299.689 kb on - strand, within EX31_RS01340 at 299.689 kb on - strand, within EX31_RS01340 at 299.848 kb on + strand, within EX31_RS01340 at 299.926 kb on + strand, within EX31_RS01340 at 299.926 kb on + strand, within EX31_RS01340 at 299.982 kb on - strand, within EX31_RS01340 at 299.982 kb on - strand, within EX31_RS01340 at 299.983 kb on + strand, within EX31_RS01340 at 300.001 kb on + strand, within EX31_RS01340 at 300.001 kb on + strand, within EX31_RS01340 at 300.001 kb on + strand, within EX31_RS01340 at 300.002 kb on - strand, within EX31_RS01340 at 300.002 kb on - strand, within EX31_RS01340 at 300.004 kb on + strand, within EX31_RS01340 at 300.004 kb on + strand, within EX31_RS01340 at 300.064 kb on + strand, within EX31_RS01340 at 300.065 kb on - strand, within EX31_RS01340 at 300.143 kb on - strand, within EX31_RS01340 at 300.179 kb on + strand, within EX31_RS01340 at 300.250 kb on + strand, within EX31_RS01340 at 300.251 kb on - strand, within EX31_RS01340 at 300.251 kb on - strand, within EX31_RS01340 at 300.274 kb on + strand, within EX31_RS01340 at 300.275 kb on - strand, within EX31_RS01340 at 300.275 kb on - strand, within EX31_RS01340 at 300.275 kb on - strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.322 kb on + strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.323 kb on - strand, within EX31_RS01340 at 300.338 kb on + strand, within EX31_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 296,253 - -0.5 296,253 - -0.5 296,259 - +0.2 296,259 - -1.3 296,298 - +0.3 296,325 - +0.2 296,325 - +0.2 296,325 - +0.6 296,329 - -1.5 296,335 - +0.5 296,348 - +0.4 296,380 + -0.1 296,408 - +1.8 296,411 - +0.2 296,411 - +0.0 296,605 + EX31_RS01330 0.16 +0.7 296,608 - EX31_RS01330 0.17 -0.7 296,619 - EX31_RS01330 0.18 -0.0 296,682 + EX31_RS01330 0.27 -0.6 296,773 - EX31_RS01330 0.41 +0.5 296,827 + EX31_RS01330 0.49 -1.3 296,828 - EX31_RS01330 0.49 +1.2 296,853 + EX31_RS01330 0.53 -0.2 296,854 - EX31_RS01330 0.53 +1.6 297,067 + EX31_RS01330 0.84 -0.6 297,067 + EX31_RS01330 0.84 -0.5 297,067 + EX31_RS01330 0.84 +0.4 297,386 + -0.4 297,463 - EX31_RS01335 0.10 -1.0 297,491 + EX31_RS01335 0.11 +0.4 297,889 - EX31_RS01335 0.30 +0.2 297,978 + EX31_RS01335 0.34 +0.9 297,986 + EX31_RS01335 0.34 +0.4 297,986 + EX31_RS01335 0.34 +0.7 297,986 + EX31_RS01335 0.34 -0.1 297,987 - EX31_RS01335 0.34 -0.5 297,987 - EX31_RS01335 0.34 -0.5 297,987 - EX31_RS01335 0.34 +0.2 297,987 - EX31_RS01335 0.34 +0.1 298,000 - EX31_RS01335 0.35 -0.0 298,023 + EX31_RS01335 0.36 +1.9 298,075 + EX31_RS01335 0.38 +1.8 298,154 + EX31_RS01335 0.42 -0.9 298,192 + EX31_RS01335 0.44 +1.2 298,213 - EX31_RS01335 0.45 +1.3 298,271 + EX31_RS01335 0.47 +0.0 298,271 + EX31_RS01335 0.47 +0.2 298,272 - EX31_RS01335 0.47 +1.3 298,272 - EX31_RS01335 0.47 +0.8 298,272 - EX31_RS01335 0.47 -0.9 298,302 + EX31_RS01335 0.49 -0.6 298,349 + EX31_RS01335 0.51 +0.6 298,482 + EX31_RS01335 0.57 -0.1 298,482 + EX31_RS01335 0.57 +1.7 298,482 + EX31_RS01335 0.57 +0.3 298,482 + EX31_RS01335 0.57 +0.2 298,482 + EX31_RS01335 0.57 +0.3 298,482 + EX31_RS01335 0.57 -1.3 298,486 + EX31_RS01335 0.57 -0.4 298,618 + EX31_RS01335 0.63 -0.5 298,658 + EX31_RS01335 0.65 -0.4 298,658 + EX31_RS01335 0.65 +0.5 298,659 - EX31_RS01335 0.65 -0.1 298,659 - EX31_RS01335 0.65 -0.5 298,659 - EX31_RS01335 0.65 -0.5 298,814 + EX31_RS01335 0.72 -0.7 298,815 - EX31_RS01335 0.72 +1.2 298,842 + EX31_RS01335 0.74 +0.6 298,932 + EX31_RS01335 0.78 +0.6 298,933 - EX31_RS01335 0.78 -0.4 299,005 + EX31_RS01335 0.81 -0.3 299,120 + EX31_RS01335 0.86 +0.1 299,126 + EX31_RS01335 0.87 +0.9 299,126 + EX31_RS01335 0.87 -1.2 299,126 + EX31_RS01335 0.87 +0.5 299,127 - EX31_RS01335 0.87 +1.4 299,412 + +0.2 299,412 + +0.9 299,412 + -1.1 299,412 + +0.3 299,413 - +1.3 299,413 - +0.1 299,413 - -0.2 299,413 - +0.4 299,413 - -1.0 299,413 - +0.4 299,413 - -0.4 299,413 - -0.4 299,501 - +0.4 299,558 + +0.2 299,640 + +1.6 299,641 - -0.8 299,681 + EX31_RS01340 0.12 -1.0 299,682 - EX31_RS01340 0.12 -0.1 299,689 - EX31_RS01340 0.12 -1.1 299,689 - EX31_RS01340 0.12 +0.7 299,848 + EX31_RS01340 0.22 +0.9 299,926 + EX31_RS01340 0.27 -0.7 299,926 + EX31_RS01340 0.27 -0.8 299,982 - EX31_RS01340 0.31 -0.5 299,982 - EX31_RS01340 0.31 +0.2 299,983 + EX31_RS01340 0.31 -0.6 300,001 + EX31_RS01340 0.32 +0.2 300,001 + EX31_RS01340 0.32 +0.7 300,001 + EX31_RS01340 0.32 +0.6 300,002 - EX31_RS01340 0.32 -0.8 300,002 - EX31_RS01340 0.32 +0.3 300,004 + EX31_RS01340 0.32 -0.5 300,004 + EX31_RS01340 0.32 -0.5 300,064 + EX31_RS01340 0.36 +0.0 300,065 - EX31_RS01340 0.36 +0.0 300,143 - EX31_RS01340 0.41 +0.4 300,179 + EX31_RS01340 0.43 +0.1 300,250 + EX31_RS01340 0.48 -0.2 300,251 - EX31_RS01340 0.48 -0.7 300,251 - EX31_RS01340 0.48 +0.3 300,274 + EX31_RS01340 0.49 -1.0 300,275 - EX31_RS01340 0.50 -0.1 300,275 - EX31_RS01340 0.50 -0.2 300,275 - EX31_RS01340 0.50 -0.1 300,322 + EX31_RS01340 0.53 +0.4 300,322 + EX31_RS01340 0.53 -1.0 300,322 + EX31_RS01340 0.53 -1.5 300,322 + EX31_RS01340 0.53 +1.5 300,322 + EX31_RS01340 0.53 +0.6 300,322 + EX31_RS01340 0.53 +1.1 300,322 + EX31_RS01340 0.53 -0.8 300,322 + EX31_RS01340 0.53 +0.5 300,322 + EX31_RS01340 0.53 -0.4 300,322 + EX31_RS01340 0.53 -0.4 300,322 + EX31_RS01340 0.53 +0.1 300,322 + EX31_RS01340 0.53 +0.5 300,322 + EX31_RS01340 0.53 -0.1 300,322 + EX31_RS01340 0.53 -0.4 300,323 - EX31_RS01340 0.53 -1.6 300,323 - EX31_RS01340 0.53 +0.6 300,323 - EX31_RS01340 0.53 +3.4 300,323 - EX31_RS01340 0.53 +0.4 300,323 - EX31_RS01340 0.53 +0.2 300,323 - EX31_RS01340 0.53 -0.3 300,323 - EX31_RS01340 0.53 +0.5 300,338 + EX31_RS01340 0.54 +0.2
Or see this region's nucleotide sequence