Strain Fitness in Rahnella sp. WP5 around EX31_RS00940

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00935 and EX31_RS00940 are separated by 4 nucleotidesEX31_RS00940 and EX31_RS25890 are separated by 47 nucleotidesEX31_RS25890 and EX31_RS00945 are separated by 614 nucleotides EX31_RS00935: EX31_RS00935 - LysR family transcriptional regulator, at 203,196 to 204,167 _RS00935 EX31_RS00940: EX31_RS00940 - manganese efflux pump MntP, at 204,172 to 204,747 _RS00940 EX31_RS25890: EX31_RS25890 - hypothetical protein, at 204,795 to 204,857 _RS25890 EX31_RS00945: EX31_RS00945 - type VI secretion system contractile sheath small subunit, at 205,472 to 205,951 _RS00945 Position (kb) 204 205Strain fitness (log2 ratio) -2 -1 0 1at 203.174 kb on + strandat 203.174 kb on + strandat 203.174 kb on + strandat 203.174 kb on + strandat 203.174 kb on + strandat 203.175 kb on - strandat 203.180 kb on + strandat 203.230 kb on + strandat 203.283 kb on - strandat 203.585 kb on + strand, within EX31_RS00935at 203.585 kb on + strand, within EX31_RS00935at 203.784 kb on + strand, within EX31_RS00935at 203.798 kb on + strand, within EX31_RS00935at 203.925 kb on - strand, within EX31_RS00935at 203.925 kb on - strand, within EX31_RS00935at 203.929 kb on - strand, within EX31_RS00935at 203.981 kb on + strand, within EX31_RS00935at 204.024 kb on + strand, within EX31_RS00935at 204.024 kb on + strand, within EX31_RS00935at 204.025 kb on - strand, within EX31_RS00935at 204.027 kb on + strand, within EX31_RS00935at 204.028 kb on - strand, within EX31_RS00935at 204.028 kb on - strand, within EX31_RS00935at 204.106 kb on + strandat 204.210 kb on + strandat 204.211 kb on - strandat 204.349 kb on - strand, within EX31_RS00940at 204.349 kb on - strand, within EX31_RS00940at 204.349 kb on - strand, within EX31_RS00940at 204.349 kb on - strand, within EX31_RS00940at 204.471 kb on + strand, within EX31_RS00940at 204.472 kb on - strand, within EX31_RS00940at 204.472 kb on - strand, within EX31_RS00940at 204.555 kb on + strand, within EX31_RS00940at 204.556 kb on - strand, within EX31_RS00940at 204.556 kb on - strand, within EX31_RS00940at 204.601 kb on - strand, within EX31_RS00940at 204.614 kb on - strand, within EX31_RS00940at 204.712 kb on - strandat 204.712 kb on - strandat 204.736 kb on - strandat 204.921 kb on - strandat 204.961 kb on + strandat 204.962 kb on - strandat 204.962 kb on - strandat 205.007 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.070 kb on - strandat 205.075 kb on + strandat 205.076 kb on - strandat 205.097 kb on - strandat 205.105 kb on - strandat 205.105 kb on - strandat 205.137 kb on - strandat 205.143 kb on + strandat 205.143 kb on + strandat 205.146 kb on + strandat 205.146 kb on + strandat 205.147 kb on - strandat 205.259 kb on + strandat 205.489 kb on + strandat 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.603 kb on + strand, within EX31_RS00945at 205.660 kb on + strand, within EX31_RS00945at 205.663 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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203,174 + +0.6
203,174 + +0.5
203,174 + -0.1
203,174 + -0.7
203,174 + -0.1
203,175 - -0.5
203,180 + -0.7
203,230 + -0.6
203,283 - -0.5
203,585 + EX31_RS00935 0.40 +1.0
203,585 + EX31_RS00935 0.40 -0.8
203,784 + EX31_RS00935 0.60 -0.3
203,798 + EX31_RS00935 0.62 -1.0
203,925 - EX31_RS00935 0.75 -0.9
203,925 - EX31_RS00935 0.75 +0.4
203,929 - EX31_RS00935 0.75 -0.2
203,981 + EX31_RS00935 0.81 -0.7
204,024 + EX31_RS00935 0.85 +0.1
204,024 + EX31_RS00935 0.85 +1.0
204,025 - EX31_RS00935 0.85 +0.2
204,027 + EX31_RS00935 0.85 -1.3
204,028 - EX31_RS00935 0.86 -0.8
204,028 - EX31_RS00935 0.86 -0.7
204,106 + +0.6
204,210 + -1.1
204,211 - -0.8
204,349 - EX31_RS00940 0.31 -1.2
204,349 - EX31_RS00940 0.31 +1.4
204,349 - EX31_RS00940 0.31 -0.9
204,349 - EX31_RS00940 0.31 +0.7
204,471 + EX31_RS00940 0.52 +0.4
204,472 - EX31_RS00940 0.52 +1.3
204,472 - EX31_RS00940 0.52 -1.1
204,555 + EX31_RS00940 0.66 +1.0
204,556 - EX31_RS00940 0.67 +0.9
204,556 - EX31_RS00940 0.67 -0.3
204,601 - EX31_RS00940 0.74 -0.1
204,614 - EX31_RS00940 0.77 +0.4
204,712 - -0.0
204,712 - -0.9
204,736 - +0.6
204,921 - -1.3
204,961 + -1.5
204,962 - -1.3
204,962 - -1.5
205,007 + -1.2
205,009 + +0.4
205,009 + -0.7
205,009 + -2.4
205,010 - -0.0
205,010 - -0.6
205,010 - +0.1
205,010 - +0.2
205,010 - -0.6
205,070 - +0.2
205,075 + -0.4
205,076 - +0.6
205,097 - -0.7
205,105 - -1.2
205,105 - -1.3
205,137 - +0.5
205,143 + +0.2
205,143 + -0.5
205,146 + -0.6
205,146 + -1.0
205,147 - -0.7
205,259 + -1.0
205,489 + -0.5
205,569 + EX31_RS00945 0.20 -0.6
205,569 + EX31_RS00945 0.20 -1.3
205,569 + EX31_RS00945 0.20 -0.3
205,603 + EX31_RS00945 0.27 +0.1
205,660 + EX31_RS00945 0.39 +0.0
205,663 + EX31_RS00945 0.40 -1.3
205,711 + EX31_RS00945 0.50 -0.5
205,711 + EX31_RS00945 0.50 -0.7
205,711 + EX31_RS00945 0.50 -1.2
205,711 + EX31_RS00945 0.50 +0.6
205,711 + EX31_RS00945 0.50 -1.3

Or see this region's nucleotide sequence