Strain Fitness in Rahnella sp. WP5 around EX31_RS00020

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS25870 and EX31_RS00010 are separated by 67 nucleotidesEX31_RS00010 and EX31_RS00015 are separated by 4 nucleotidesEX31_RS00015 and EX31_RS00020 are separated by 187 nucleotidesEX31_RS00020 and EX31_RS00025 are separated by 10 nucleotides EX31_RS25870: EX31_RS25870 - hypothetical protein, at 381 to 524 _RS25870 EX31_RS00010: EX31_RS00010 - type II toxin-antitoxin system HipA family toxin, at 592 to 813 _RS00010 EX31_RS00015: EX31_RS00015 - helix-turn-helix transcriptional regulator, at 818 to 1,114 _RS00015 EX31_RS00020: EX31_RS00020 - GntR family transcriptional regulator, at 1,302 to 2,012 _RS00020 EX31_RS00025: EX31_RS00025 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 2,023 to 3,222 _RS00025 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.325 kb on + strandat 0.383 kb on - strandat 0.531 kb on + strandat 0.542 kb on + strandat 0.543 kb on - strandat 0.663 kb on + strand, within EX31_RS00010at 0.723 kb on - strand, within EX31_RS00010at 0.727 kb on + strand, within EX31_RS00010at 0.771 kb on + strand, within EX31_RS00010at 0.785 kb on - strand, within EX31_RS00010at 0.813 kb on + strandat 0.814 kb on - strandat 0.814 kb on - strandat 0.845 kb on - strandat 0.845 kb on - strandat 0.849 kb on - strand, within EX31_RS00015at 0.874 kb on + strand, within EX31_RS00015at 0.874 kb on + strand, within EX31_RS00015at 0.874 kb on + strand, within EX31_RS00015at 0.874 kb on + strand, within EX31_RS00015at 0.875 kb on - strand, within EX31_RS00015at 0.875 kb on - strand, within EX31_RS00015at 0.931 kb on + strand, within EX31_RS00015at 0.931 kb on + strand, within EX31_RS00015at 0.931 kb on + strand, within EX31_RS00015at 0.932 kb on - strand, within EX31_RS00015at 0.932 kb on - strand, within EX31_RS00015at 0.932 kb on - strand, within EX31_RS00015at 0.965 kb on - strand, within EX31_RS00015at 0.990 kb on + strand, within EX31_RS00015at 0.991 kb on - strand, within EX31_RS00015at 0.991 kb on - strand, within EX31_RS00015at 0.991 kb on - strand, within EX31_RS00015at 0.991 kb on - strand, within EX31_RS00015at 0.991 kb on - strand, within EX31_RS00015at 1.085 kb on - strandat 1.085 kb on - strandat 1.085 kb on - strandat 1.101 kb on + strandat 1.102 kb on - strandat 1.102 kb on - strandat 1.115 kb on + strandat 1.130 kb on - strandat 1.130 kb on - strandat 1.142 kb on - strandat 1.150 kb on + strandat 1.150 kb on + strandat 1.159 kb on + strandat 1.159 kb on + strandat 1.160 kb on - strandat 1.172 kb on - strandat 1.319 kb on + strandat 1.319 kb on + strandat 1.494 kb on + strand, within EX31_RS00020at 1.494 kb on + strand, within EX31_RS00020at 1.494 kb on + strand, within EX31_RS00020at 1.647 kb on - strand, within EX31_RS00020at 1.690 kb on + strand, within EX31_RS00020at 1.690 kb on + strand, within EX31_RS00020at 1.770 kb on + strand, within EX31_RS00020at 1.770 kb on + strand, within EX31_RS00020at 1.771 kb on - strand, within EX31_RS00020at 1.835 kb on + strand, within EX31_RS00020at 1.862 kb on + strand, within EX31_RS00020at 1.862 kb on + strand, within EX31_RS00020at 1.862 kb on + strand, within EX31_RS00020at 1.890 kb on - strand, within EX31_RS00020at 1.890 kb on - strand, within EX31_RS00020at 1.924 kb on - strand, within EX31_RS00020at 1.965 kb on + strandat 1.965 kb on + strandat 1.966 kb on - strandat 1.966 kb on - strandat 1.966 kb on - strandat 2.010 kb on + strandat 2.010 kb on + strandat 2.010 kb on + strandat 2.011 kb on - strandat 2.013 kb on + strandat 2.013 kb on + strandat 2.014 kb on - strandat 2.014 kb on - strandat 2.081 kb on + strandat 2.082 kb on - strandat 2.151 kb on - strand, within EX31_RS00025at 2.238 kb on + strand, within EX31_RS00025at 2.262 kb on + strand, within EX31_RS00025at 2.263 kb on - strand, within EX31_RS00025at 2.289 kb on + strand, within EX31_RS00025at 2.290 kb on - strand, within EX31_RS00025at 2.290 kb on - strand, within EX31_RS00025at 2.446 kb on - strand, within EX31_RS00025at 2.446 kb on - strand, within EX31_RS00025at 2.540 kb on + strand, within EX31_RS00025at 2.682 kb on - strand, within EX31_RS00025at 2.700 kb on - strand, within EX31_RS00025at 2.761 kb on + strand, within EX31_RS00025at 2.853 kb on - strand, within EX31_RS00025at 2.853 kb on - strand, within EX31_RS00025at 2.877 kb on + strand, within EX31_RS00025at 2.895 kb on - strand, within EX31_RS00025at 2.895 kb on - strand, within EX31_RS00025at 2.905 kb on - strand, within EX31_RS00025at 2.905 kb on - strand, within EX31_RS00025at 2.941 kb on - strand, within EX31_RS00025

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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325 + -2.9
383 - -0.3
531 + +0.3
542 + -0.5
543 - +1.4
663 + EX31_RS00010 0.32 +0.5
723 - EX31_RS00010 0.59 -0.0
727 + EX31_RS00010 0.61 -0.1
771 + EX31_RS00010 0.81 -1.1
785 - EX31_RS00010 0.87 +0.7
813 + +0.3
814 - +0.5
814 - +0.5
845 - +1.8
845 - +0.4
849 - EX31_RS00015 0.10 +0.2
874 + EX31_RS00015 0.19 -2.5
874 + EX31_RS00015 0.19 +3.1
874 + EX31_RS00015 0.19 -0.4
874 + EX31_RS00015 0.19 +0.2
875 - EX31_RS00015 0.19 +0.9
875 - EX31_RS00015 0.19 -0.9
931 + EX31_RS00015 0.38 -0.4
931 + EX31_RS00015 0.38 -0.1
931 + EX31_RS00015 0.38 +0.2
932 - EX31_RS00015 0.38 +0.0
932 - EX31_RS00015 0.38 -0.2
932 - EX31_RS00015 0.38 +0.1
965 - EX31_RS00015 0.49 -0.3
990 + EX31_RS00015 0.58 +0.5
991 - EX31_RS00015 0.58 +0.4
991 - EX31_RS00015 0.58 -0.2
991 - EX31_RS00015 0.58 -0.3
991 - EX31_RS00015 0.58 +0.3
991 - EX31_RS00015 0.58 -1.4
1,085 - -0.2
1,085 - -1.1
1,085 - +0.7
1,101 + +1.9
1,102 - -0.5
1,102 - -1.2
1,115 + -0.6
1,130 - +0.2
1,130 - -2.2
1,142 - -0.5
1,150 + +0.6
1,150 + -0.2
1,159 + +0.2
1,159 + +0.0
1,160 - -0.1
1,172 - +1.0
1,319 + +0.2
1,319 + -1.3
1,494 + EX31_RS00020 0.27 -0.8
1,494 + EX31_RS00020 0.27 -0.1
1,494 + EX31_RS00020 0.27 +0.5
1,647 - EX31_RS00020 0.49 +1.1
1,690 + EX31_RS00020 0.55 +0.0
1,690 + EX31_RS00020 0.55 +0.1
1,770 + EX31_RS00020 0.66 +0.5
1,770 + EX31_RS00020 0.66 +0.3
1,771 - EX31_RS00020 0.66 +0.9
1,835 + EX31_RS00020 0.75 +1.0
1,862 + EX31_RS00020 0.79 +1.0
1,862 + EX31_RS00020 0.79 -0.7
1,862 + EX31_RS00020 0.79 +0.5
1,890 - EX31_RS00020 0.83 +0.7
1,890 - EX31_RS00020 0.83 +0.8
1,924 - EX31_RS00020 0.87 -0.4
1,965 + +0.9
1,965 + -0.6
1,966 - -0.6
1,966 - -0.4
1,966 - +0.5
2,010 + +0.6
2,010 + -0.1
2,010 + +0.3
2,011 - +0.8
2,013 + -0.8
2,013 + -0.1
2,014 - +1.0
2,014 - -0.0
2,081 + +0.9
2,082 - +0.9
2,151 - EX31_RS00025 0.11 -0.1
2,238 + EX31_RS00025 0.18 -0.5
2,262 + EX31_RS00025 0.20 -0.1
2,263 - EX31_RS00025 0.20 +0.3
2,289 + EX31_RS00025 0.22 +0.6
2,290 - EX31_RS00025 0.22 +0.4
2,290 - EX31_RS00025 0.22 +0.3
2,446 - EX31_RS00025 0.35 +0.2
2,446 - EX31_RS00025 0.35 +2.8
2,540 + EX31_RS00025 0.43 +0.5
2,682 - EX31_RS00025 0.55 -1.0
2,700 - EX31_RS00025 0.56 +0.5
2,761 + EX31_RS00025 0.61 +0.1
2,853 - EX31_RS00025 0.69 -1.7
2,853 - EX31_RS00025 0.69 +1.2
2,877 + EX31_RS00025 0.71 +0.8
2,895 - EX31_RS00025 0.73 -0.7
2,895 - EX31_RS00025 0.73 -0.4
2,905 - EX31_RS00025 0.73 -0.6
2,905 - EX31_RS00025 0.73 -0.2
2,941 - EX31_RS00025 0.77 +0.6

Or see this region's nucleotide sequence