Strain Fitness in Rahnella sp. WP5 around EX31_RS20405

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20400 and EX31_RS20405 are separated by 36 nucleotidesEX31_RS20405 and EX31_RS20410 overlap by 16 nucleotidesEX31_RS20410 and EX31_RS20415 overlap by 17 nucleotides EX31_RS20400: EX31_RS20400 - glycosyltransferase family 2 protein, at 712,808 to 713,797 _RS20400 EX31_RS20405: EX31_RS20405 - class I SAM-dependent methyltransferase, at 713,834 to 714,466 _RS20405 EX31_RS20410: EX31_RS20410 - hypothetical protein, at 714,451 to 715,359 _RS20410 EX31_RS20415: EX31_RS20415 - phospholipid carrier-dependent glycosyltransferase, at 715,343 to 717,115 _RS20415 Position (kb) 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1at 712.900 kb on + strandat 712.942 kb on + strand, within EX31_RS20400at 712.942 kb on + strand, within EX31_RS20400at 712.942 kb on + strand, within EX31_RS20400at 712.942 kb on + strand, within EX31_RS20400at 712.943 kb on - strand, within EX31_RS20400at 712.943 kb on - strand, within EX31_RS20400at 712.980 kb on + strand, within EX31_RS20400at 712.980 kb on + strand, within EX31_RS20400at 712.981 kb on - strand, within EX31_RS20400at 712.990 kb on + strand, within EX31_RS20400at 712.990 kb on + strand, within EX31_RS20400at 712.990 kb on + strand, within EX31_RS20400at 712.991 kb on - strand, within EX31_RS20400at 712.991 kb on - strand, within EX31_RS20400at 713.012 kb on + strand, within EX31_RS20400at 713.012 kb on + strand, within EX31_RS20400at 713.013 kb on - strand, within EX31_RS20400at 713.071 kb on + strand, within EX31_RS20400at 713.092 kb on + strand, within EX31_RS20400at 713.092 kb on + strand, within EX31_RS20400at 713.093 kb on - strand, within EX31_RS20400at 713.093 kb on - strand, within EX31_RS20400at 713.104 kb on + strand, within EX31_RS20400at 713.104 kb on + strand, within EX31_RS20400at 713.128 kb on - strand, within EX31_RS20400at 713.128 kb on - strand, within EX31_RS20400at 713.311 kb on + strand, within EX31_RS20400at 713.328 kb on - strand, within EX31_RS20400at 713.329 kb on + strand, within EX31_RS20400at 713.329 kb on + strand, within EX31_RS20400at 713.329 kb on + strand, within EX31_RS20400at 713.330 kb on - strand, within EX31_RS20400at 713.333 kb on + strand, within EX31_RS20400at 713.333 kb on + strand, within EX31_RS20400at 713.333 kb on + strand, within EX31_RS20400at 713.334 kb on - strand, within EX31_RS20400at 713.335 kb on + strand, within EX31_RS20400at 713.335 kb on + strand, within EX31_RS20400at 713.347 kb on + strand, within EX31_RS20400at 713.377 kb on + strand, within EX31_RS20400at 713.388 kb on + strand, within EX31_RS20400at 713.401 kb on - strand, within EX31_RS20400at 713.412 kb on + strand, within EX31_RS20400at 713.412 kb on + strand, within EX31_RS20400at 713.413 kb on - strand, within EX31_RS20400at 713.448 kb on - strand, within EX31_RS20400at 713.448 kb on - strand, within EX31_RS20400at 713.449 kb on + strand, within EX31_RS20400at 713.559 kb on + strand, within EX31_RS20400at 713.560 kb on - strand, within EX31_RS20400at 713.568 kb on + strand, within EX31_RS20400at 713.569 kb on - strand, within EX31_RS20400at 713.604 kb on + strand, within EX31_RS20400at 713.605 kb on - strand, within EX31_RS20400at 713.605 kb on - strand, within EX31_RS20400at 713.626 kb on + strand, within EX31_RS20400at 713.626 kb on + strand, within EX31_RS20400at 713.626 kb on + strand, within EX31_RS20400at 713.700 kb on + strandat 713.701 kb on - strandat 713.712 kb on + strandat 713.817 kb on + strandat 713.852 kb on - strandat 713.852 kb on - strandat 713.894 kb on + strandat 714.023 kb on - strand, within EX31_RS20405at 714.023 kb on - strand, within EX31_RS20405at 714.082 kb on + strand, within EX31_RS20405at 714.261 kb on - strand, within EX31_RS20405at 714.267 kb on + strand, within EX31_RS20405at 714.271 kb on - strand, within EX31_RS20405at 714.300 kb on + strand, within EX31_RS20405at 714.304 kb on + strand, within EX31_RS20405at 714.305 kb on - strand, within EX31_RS20405at 714.323 kb on + strand, within EX31_RS20405at 714.323 kb on + strand, within EX31_RS20405at 714.324 kb on - strand, within EX31_RS20405at 714.358 kb on - strand, within EX31_RS20405at 714.629 kb on + strand, within EX31_RS20410at 714.629 kb on + strand, within EX31_RS20410at 714.630 kb on - strand, within EX31_RS20410at 714.660 kb on + strand, within EX31_RS20410at 714.751 kb on + strand, within EX31_RS20410at 714.792 kb on + strand, within EX31_RS20410at 714.918 kb on - strand, within EX31_RS20410at 714.951 kb on - strand, within EX31_RS20410at 715.111 kb on - strand, within EX31_RS20410at 715.129 kb on + strand, within EX31_RS20410at 715.188 kb on - strand, within EX31_RS20410at 715.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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712,900 + +0.3
712,942 + EX31_RS20400 0.14 +0.4
712,942 + EX31_RS20400 0.14 +0.3
712,942 + EX31_RS20400 0.14 -0.9
712,942 + EX31_RS20400 0.14 -0.3
712,943 - EX31_RS20400 0.14 +0.2
712,943 - EX31_RS20400 0.14 +0.3
712,980 + EX31_RS20400 0.17 +0.2
712,980 + EX31_RS20400 0.17 -0.1
712,981 - EX31_RS20400 0.17 +0.3
712,990 + EX31_RS20400 0.18 -0.2
712,990 + EX31_RS20400 0.18 -0.1
712,990 + EX31_RS20400 0.18 -0.6
712,991 - EX31_RS20400 0.18 -1.8
712,991 - EX31_RS20400 0.18 -0.5
713,012 + EX31_RS20400 0.21 -0.5
713,012 + EX31_RS20400 0.21 +0.0
713,013 - EX31_RS20400 0.21 +0.3
713,071 + EX31_RS20400 0.27 -1.5
713,092 + EX31_RS20400 0.29 +0.5
713,092 + EX31_RS20400 0.29 -1.6
713,093 - EX31_RS20400 0.29 -0.2
713,093 - EX31_RS20400 0.29 -0.4
713,104 + EX31_RS20400 0.30 +0.2
713,104 + EX31_RS20400 0.30 -0.2
713,128 - EX31_RS20400 0.32 -0.2
713,128 - EX31_RS20400 0.32 -0.0
713,311 + EX31_RS20400 0.51 +0.4
713,328 - EX31_RS20400 0.53 +0.2
713,329 + EX31_RS20400 0.53 -0.3
713,329 + EX31_RS20400 0.53 -0.0
713,329 + EX31_RS20400 0.53 +0.1
713,330 - EX31_RS20400 0.53 -0.2
713,333 + EX31_RS20400 0.53 +0.8
713,333 + EX31_RS20400 0.53 +0.4
713,333 + EX31_RS20400 0.53 +1.5
713,334 - EX31_RS20400 0.53 -1.2
713,335 + EX31_RS20400 0.53 -0.3
713,335 + EX31_RS20400 0.53 -0.5
713,347 + EX31_RS20400 0.54 -0.9
713,377 + EX31_RS20400 0.57 -1.0
713,388 + EX31_RS20400 0.59 +0.5
713,401 - EX31_RS20400 0.60 +0.4
713,412 + EX31_RS20400 0.61 +0.6
713,412 + EX31_RS20400 0.61 -0.9
713,413 - EX31_RS20400 0.61 -0.3
713,448 - EX31_RS20400 0.65 +0.2
713,448 - EX31_RS20400 0.65 +0.0
713,449 + EX31_RS20400 0.65 -0.0
713,559 + EX31_RS20400 0.76 -0.2
713,560 - EX31_RS20400 0.76 +0.6
713,568 + EX31_RS20400 0.77 -0.2
713,569 - EX31_RS20400 0.77 -0.4
713,604 + EX31_RS20400 0.80 +0.1
713,605 - EX31_RS20400 0.81 -0.2
713,605 - EX31_RS20400 0.81 +0.2
713,626 + EX31_RS20400 0.83 -0.5
713,626 + EX31_RS20400 0.83 -1.4
713,626 + EX31_RS20400 0.83 +1.2
713,700 + +0.5
713,701 - +0.3
713,712 + -0.4
713,817 + -0.1
713,852 - -0.6
713,852 - +0.0
713,894 + -0.4
714,023 - EX31_RS20405 0.30 -0.7
714,023 - EX31_RS20405 0.30 -0.5
714,082 + EX31_RS20405 0.39 -0.8
714,261 - EX31_RS20405 0.67 -0.4
714,267 + EX31_RS20405 0.68 -0.0
714,271 - EX31_RS20405 0.69 -1.4
714,300 + EX31_RS20405 0.74 -0.4
714,304 + EX31_RS20405 0.74 +0.8
714,305 - EX31_RS20405 0.74 -0.2
714,323 + EX31_RS20405 0.77 +0.3
714,323 + EX31_RS20405 0.77 -3.0
714,324 - EX31_RS20405 0.77 -0.6
714,358 - EX31_RS20405 0.83 -0.1
714,629 + EX31_RS20410 0.20 +1.5
714,629 + EX31_RS20410 0.20 +0.4
714,630 - EX31_RS20410 0.20 -0.3
714,660 + EX31_RS20410 0.23 -0.4
714,751 + EX31_RS20410 0.33 -0.6
714,792 + EX31_RS20410 0.38 -1.3
714,918 - EX31_RS20410 0.51 -0.7
714,951 - EX31_RS20410 0.55 -0.7
715,111 - EX31_RS20410 0.73 +0.4
715,129 + EX31_RS20410 0.75 -0.2
715,188 - EX31_RS20410 0.81 +0.0
715,309 + -0.0

Or see this region's nucleotide sequence