Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20395 and EX31_RS20400 are separated by 423 nucleotides EX31_RS20400 and EX31_RS20405 are separated by 36 nucleotides EX31_RS20405 and EX31_RS20410 overlap by 16 nucleotides
EX31_RS20395: EX31_RS20395 - hydroxyethylthiazole kinase, at 711,575 to 712,384
_RS20395
EX31_RS20400: EX31_RS20400 - glycosyltransferase family 2 protein, at 712,808 to 713,797
_RS20400
EX31_RS20405: EX31_RS20405 - class I SAM-dependent methyltransferase, at 713,834 to 714,466
_RS20405
EX31_RS20410: EX31_RS20410 - hypothetical protein, at 714,451 to 715,359
_RS20410
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 711.852 kb on + strand, within EX31_RS20395 at 711.853 kb on - strand, within EX31_RS20395 at 712.021 kb on + strand, within EX31_RS20395 at 712.022 kb on - strand, within EX31_RS20395 at 712.022 kb on - strand, within EX31_RS20395 at 712.022 kb on - strand, within EX31_RS20395 at 712.178 kb on + strand, within EX31_RS20395 at 712.369 kb on + strand at 712.370 kb on - strand at 712.384 kb on + strand at 712.384 kb on + strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.385 kb on - strand at 712.427 kb on + strand at 712.428 kb on - strand at 712.464 kb on + strand at 712.464 kb on + strand at 712.465 kb on - strand at 712.465 kb on - strand at 712.465 kb on - strand at 712.522 kb on + strand at 712.579 kb on + strand at 712.580 kb on - strand at 712.582 kb on + strand at 712.593 kb on + strand at 712.598 kb on + strand at 712.598 kb on + strand at 712.599 kb on - strand at 712.599 kb on - strand at 712.625 kb on + strand at 712.628 kb on + strand at 712.648 kb on - strand at 712.648 kb on - strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.675 kb on - strand at 712.676 kb on + strand at 712.677 kb on - strand at 712.677 kb on - strand at 712.688 kb on + strand at 712.688 kb on + strand at 712.688 kb on + strand at 712.689 kb on - strand at 712.689 kb on - strand at 712.714 kb on + strand at 712.730 kb on + strand at 712.761 kb on - strand at 712.780 kb on + strand at 712.781 kb on - strand at 712.821 kb on + strand at 712.900 kb on + strand at 712.942 kb on + strand, within EX31_RS20400 at 712.942 kb on + strand, within EX31_RS20400 at 712.942 kb on + strand, within EX31_RS20400 at 712.942 kb on + strand, within EX31_RS20400 at 712.943 kb on - strand, within EX31_RS20400 at 712.943 kb on - strand, within EX31_RS20400 at 712.980 kb on + strand, within EX31_RS20400 at 712.980 kb on + strand, within EX31_RS20400 at 712.981 kb on - strand, within EX31_RS20400 at 712.990 kb on + strand, within EX31_RS20400 at 712.990 kb on + strand, within EX31_RS20400 at 712.990 kb on + strand, within EX31_RS20400 at 712.991 kb on - strand, within EX31_RS20400 at 712.991 kb on - strand, within EX31_RS20400 at 713.012 kb on + strand, within EX31_RS20400 at 713.012 kb on + strand, within EX31_RS20400 at 713.013 kb on - strand, within EX31_RS20400 at 713.071 kb on + strand, within EX31_RS20400 at 713.092 kb on + strand, within EX31_RS20400 at 713.092 kb on + strand, within EX31_RS20400 at 713.093 kb on - strand, within EX31_RS20400 at 713.093 kb on - strand, within EX31_RS20400 at 713.104 kb on + strand, within EX31_RS20400 at 713.104 kb on + strand, within EX31_RS20400 at 713.128 kb on - strand, within EX31_RS20400 at 713.128 kb on - strand, within EX31_RS20400 at 713.311 kb on + strand, within EX31_RS20400 at 713.328 kb on - strand, within EX31_RS20400 at 713.329 kb on + strand, within EX31_RS20400 at 713.329 kb on + strand, within EX31_RS20400 at 713.329 kb on + strand, within EX31_RS20400 at 713.330 kb on - strand, within EX31_RS20400 at 713.333 kb on + strand, within EX31_RS20400 at 713.333 kb on + strand, within EX31_RS20400 at 713.333 kb on + strand, within EX31_RS20400 at 713.334 kb on - strand, within EX31_RS20400 at 713.335 kb on + strand, within EX31_RS20400 at 713.335 kb on + strand, within EX31_RS20400 at 713.347 kb on + strand, within EX31_RS20400 at 713.377 kb on + strand, within EX31_RS20400 at 713.388 kb on + strand, within EX31_RS20400 at 713.401 kb on - strand, within EX31_RS20400 at 713.412 kb on + strand, within EX31_RS20400 at 713.412 kb on + strand, within EX31_RS20400 at 713.413 kb on - strand, within EX31_RS20400 at 713.448 kb on - strand, within EX31_RS20400 at 713.448 kb on - strand, within EX31_RS20400 at 713.449 kb on + strand, within EX31_RS20400 at 713.559 kb on + strand, within EX31_RS20400 at 713.560 kb on - strand, within EX31_RS20400 at 713.568 kb on + strand, within EX31_RS20400 at 713.569 kb on - strand, within EX31_RS20400 at 713.604 kb on + strand, within EX31_RS20400 at 713.605 kb on - strand, within EX31_RS20400 at 713.605 kb on - strand, within EX31_RS20400 at 713.626 kb on + strand, within EX31_RS20400 at 713.626 kb on + strand, within EX31_RS20400 at 713.626 kb on + strand, within EX31_RS20400 at 713.700 kb on + strand at 713.701 kb on - strand at 713.712 kb on + strand at 713.817 kb on + strand at 713.852 kb on - strand at 713.852 kb on - strand at 713.894 kb on + strand at 714.023 kb on - strand, within EX31_RS20405 at 714.023 kb on - strand, within EX31_RS20405 at 714.082 kb on + strand, within EX31_RS20405 at 714.261 kb on - strand, within EX31_RS20405 at 714.267 kb on + strand, within EX31_RS20405 at 714.271 kb on - strand, within EX31_RS20405 at 714.300 kb on + strand, within EX31_RS20405 at 714.304 kb on + strand, within EX31_RS20405 at 714.305 kb on - strand, within EX31_RS20405 at 714.323 kb on + strand, within EX31_RS20405 at 714.323 kb on + strand, within EX31_RS20405 at 714.324 kb on - strand, within EX31_RS20405 at 714.358 kb on - strand, within EX31_RS20405 at 714.629 kb on + strand, within EX31_RS20410 at 714.629 kb on + strand, within EX31_RS20410 at 714.630 kb on - strand, within EX31_RS20410 at 714.660 kb on + strand, within EX31_RS20410 at 714.751 kb on + strand, within EX31_RS20410 at 714.792 kb on + strand, within EX31_RS20410
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 711,852 + EX31_RS20395 0.34 -0.6 711,853 - EX31_RS20395 0.34 +0.4 712,021 + EX31_RS20395 0.55 -0.4 712,022 - EX31_RS20395 0.55 -0.5 712,022 - EX31_RS20395 0.55 -0.3 712,022 - EX31_RS20395 0.55 -0.4 712,178 + EX31_RS20395 0.74 -1.8 712,369 + -1.7 712,370 - +0.7 712,384 + +0.1 712,384 + +0.3 712,385 - +0.6 712,385 - +1.2 712,385 - +0.8 712,385 - -0.2 712,385 - +0.2 712,385 - +0.6 712,385 - +0.0 712,385 - +0.7 712,427 + +0.7 712,428 - -1.4 712,464 + -0.4 712,464 + -0.2 712,465 - -0.4 712,465 - -0.3 712,465 - -0.5 712,522 + -1.2 712,579 + -2.1 712,580 - -1.7 712,582 + +1.3 712,593 + -1.9 712,598 + -0.6 712,598 + +0.5 712,599 - +0.3 712,599 - +0.6 712,625 + +0.7 712,628 + -1.1 712,648 - -0.0 712,648 - +0.1 712,674 + +0.3 712,674 + -0.2 712,674 + -0.8 712,675 - +0.2 712,676 + +0.9 712,677 - -0.5 712,677 - -1.3 712,688 + +0.2 712,688 + +2.0 712,688 + -0.4 712,689 - -0.9 712,689 - +0.7 712,714 + -2.8 712,730 + +0.4 712,761 - +0.3 712,780 + -1.3 712,781 - -0.7 712,821 + +0.5 712,900 + +0.3 712,942 + EX31_RS20400 0.14 +0.4 712,942 + EX31_RS20400 0.14 +0.3 712,942 + EX31_RS20400 0.14 -0.9 712,942 + EX31_RS20400 0.14 -0.3 712,943 - EX31_RS20400 0.14 +0.2 712,943 - EX31_RS20400 0.14 +0.3 712,980 + EX31_RS20400 0.17 +0.2 712,980 + EX31_RS20400 0.17 -0.1 712,981 - EX31_RS20400 0.17 +0.3 712,990 + EX31_RS20400 0.18 -0.2 712,990 + EX31_RS20400 0.18 -0.1 712,990 + EX31_RS20400 0.18 -0.6 712,991 - EX31_RS20400 0.18 -1.8 712,991 - EX31_RS20400 0.18 -0.5 713,012 + EX31_RS20400 0.21 -0.5 713,012 + EX31_RS20400 0.21 +0.0 713,013 - EX31_RS20400 0.21 +0.3 713,071 + EX31_RS20400 0.27 -1.5 713,092 + EX31_RS20400 0.29 +0.5 713,092 + EX31_RS20400 0.29 -1.6 713,093 - EX31_RS20400 0.29 -0.2 713,093 - EX31_RS20400 0.29 -0.4 713,104 + EX31_RS20400 0.30 +0.2 713,104 + EX31_RS20400 0.30 -0.2 713,128 - EX31_RS20400 0.32 -0.2 713,128 - EX31_RS20400 0.32 -0.0 713,311 + EX31_RS20400 0.51 +0.4 713,328 - EX31_RS20400 0.53 +0.2 713,329 + EX31_RS20400 0.53 -0.3 713,329 + EX31_RS20400 0.53 -0.0 713,329 + EX31_RS20400 0.53 +0.1 713,330 - EX31_RS20400 0.53 -0.2 713,333 + EX31_RS20400 0.53 +0.8 713,333 + EX31_RS20400 0.53 +0.4 713,333 + EX31_RS20400 0.53 +1.5 713,334 - EX31_RS20400 0.53 -1.2 713,335 + EX31_RS20400 0.53 -0.3 713,335 + EX31_RS20400 0.53 -0.5 713,347 + EX31_RS20400 0.54 -0.9 713,377 + EX31_RS20400 0.57 -1.0 713,388 + EX31_RS20400 0.59 +0.5 713,401 - EX31_RS20400 0.60 +0.4 713,412 + EX31_RS20400 0.61 +0.6 713,412 + EX31_RS20400 0.61 -0.9 713,413 - EX31_RS20400 0.61 -0.3 713,448 - EX31_RS20400 0.65 +0.2 713,448 - EX31_RS20400 0.65 +0.0 713,449 + EX31_RS20400 0.65 -0.0 713,559 + EX31_RS20400 0.76 -0.2 713,560 - EX31_RS20400 0.76 +0.6 713,568 + EX31_RS20400 0.77 -0.2 713,569 - EX31_RS20400 0.77 -0.4 713,604 + EX31_RS20400 0.80 +0.1 713,605 - EX31_RS20400 0.81 -0.2 713,605 - EX31_RS20400 0.81 +0.2 713,626 + EX31_RS20400 0.83 -0.5 713,626 + EX31_RS20400 0.83 -1.4 713,626 + EX31_RS20400 0.83 +1.2 713,700 + +0.5 713,701 - +0.3 713,712 + -0.4 713,817 + -0.1 713,852 - -0.6 713,852 - +0.0 713,894 + -0.4 714,023 - EX31_RS20405 0.30 -0.7 714,023 - EX31_RS20405 0.30 -0.5 714,082 + EX31_RS20405 0.39 -0.8 714,261 - EX31_RS20405 0.67 -0.4 714,267 + EX31_RS20405 0.68 -0.0 714,271 - EX31_RS20405 0.69 -1.4 714,300 + EX31_RS20405 0.74 -0.4 714,304 + EX31_RS20405 0.74 +0.8 714,305 - EX31_RS20405 0.74 -0.2 714,323 + EX31_RS20405 0.77 +0.3 714,323 + EX31_RS20405 0.77 -3.0 714,324 - EX31_RS20405 0.77 -0.6 714,358 - EX31_RS20405 0.83 -0.1 714,629 + EX31_RS20410 0.20 +1.5 714,629 + EX31_RS20410 0.20 +0.4 714,630 - EX31_RS20410 0.20 -0.3 714,660 + EX31_RS20410 0.23 -0.4 714,751 + EX31_RS20410 0.33 -0.6 714,792 + EX31_RS20410 0.38 -1.3
Or see this region's nucleotide sequence