Strain Fitness in Rahnella sp. WP5 around EX31_RS10900

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10895 and EX31_RS10900 overlap by 4 nucleotidesEX31_RS10900 and EX31_RS10905 are separated by 260 nucleotides EX31_RS10895: EX31_RS10895 - acyl-CoA transferase, at 105,099 to 106,481 _RS10895 EX31_RS10900: EX31_RS10900 - helix-turn-helix domain-containing protein, at 106,478 to 107,329 _RS10900 EX31_RS10905: EX31_RS10905 - DUF2264 domain-containing protein, at 107,590 to 109,428 _RS10905 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1 2at 105.793 kb on + strand, within EX31_RS10895at 105.793 kb on + strand, within EX31_RS10895at 105.793 kb on + strand, within EX31_RS10895at 105.793 kb on + strand, within EX31_RS10895at 105.794 kb on - strand, within EX31_RS10895at 105.794 kb on - strand, within EX31_RS10895at 105.946 kb on - strand, within EX31_RS10895at 105.975 kb on + strand, within EX31_RS10895at 106.223 kb on + strand, within EX31_RS10895at 106.224 kb on - strand, within EX31_RS10895at 106.268 kb on + strand, within EX31_RS10895at 106.269 kb on - strand, within EX31_RS10895at 106.269 kb on - strand, within EX31_RS10895at 106.367 kb on + strandat 106.367 kb on + strandat 106.367 kb on + strandat 106.367 kb on + strandat 106.367 kb on + strandat 106.426 kb on + strandat 106.427 kb on - strandat 106.427 kb on - strandat 106.427 kb on - strandat 106.427 kb on - strandat 106.427 kb on - strandat 106.427 kb on - strandat 106.622 kb on + strand, within EX31_RS10900at 106.659 kb on + strand, within EX31_RS10900at 106.705 kb on + strand, within EX31_RS10900at 106.706 kb on - strand, within EX31_RS10900at 106.706 kb on - strand, within EX31_RS10900at 106.706 kb on - strand, within EX31_RS10900at 106.707 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.937 kb on + strand, within EX31_RS10900at 106.938 kb on - strand, within EX31_RS10900at 106.938 kb on - strand, within EX31_RS10900at 106.938 kb on - strand, within EX31_RS10900at 106.938 kb on - strand, within EX31_RS10900at 106.940 kb on - strand, within EX31_RS10900at 106.965 kb on + strand, within EX31_RS10900at 106.965 kb on + strand, within EX31_RS10900at 106.966 kb on - strand, within EX31_RS10900at 107.082 kb on + strand, within EX31_RS10900at 107.167 kb on - strand, within EX31_RS10900at 107.167 kb on - strand, within EX31_RS10900at 107.409 kb on + strandat 107.409 kb on + strandat 107.686 kb on - strandat 107.878 kb on + strand, within EX31_RS10905at 108.084 kb on + strand, within EX31_RS10905at 108.149 kb on - strand, within EX31_RS10905at 108.151 kb on + strand, within EX31_RS10905at 108.151 kb on + strand, within EX31_RS10905at 108.238 kb on + strand, within EX31_RS10905at 108.238 kb on + strand, within EX31_RS10905at 108.284 kb on + strand, within EX31_RS10905at 108.285 kb on - strand, within EX31_RS10905

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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105,793 + EX31_RS10895 0.50 -0.5
105,793 + EX31_RS10895 0.50 +0.6
105,793 + EX31_RS10895 0.50 +0.2
105,793 + EX31_RS10895 0.50 +0.6
105,794 - EX31_RS10895 0.50 +0.1
105,794 - EX31_RS10895 0.50 +0.2
105,946 - EX31_RS10895 0.61 +0.2
105,975 + EX31_RS10895 0.63 +0.1
106,223 + EX31_RS10895 0.81 -0.2
106,224 - EX31_RS10895 0.81 +0.6
106,268 + EX31_RS10895 0.85 -0.3
106,269 - EX31_RS10895 0.85 +1.2
106,269 - EX31_RS10895 0.85 -0.5
106,367 + -0.8
106,367 + +0.0
106,367 + +1.0
106,367 + -0.9
106,367 + -0.5
106,426 + -0.7
106,427 - +1.6
106,427 - -0.8
106,427 - -0.6
106,427 - +0.2
106,427 - +0.5
106,427 - +0.6
106,622 + EX31_RS10900 0.17 -0.3
106,659 + EX31_RS10900 0.21 +1.0
106,705 + EX31_RS10900 0.27 +0.0
106,706 - EX31_RS10900 0.27 -0.9
106,706 - EX31_RS10900 0.27 +2.4
106,706 - EX31_RS10900 0.27 -0.4
106,707 + EX31_RS10900 0.27 +0.5
106,937 + EX31_RS10900 0.54 +0.8
106,937 + EX31_RS10900 0.54 -0.7
106,937 + EX31_RS10900 0.54 +0.2
106,937 + EX31_RS10900 0.54 -0.4
106,937 + EX31_RS10900 0.54 -0.0
106,937 + EX31_RS10900 0.54 -2.2
106,937 + EX31_RS10900 0.54 -0.8
106,938 - EX31_RS10900 0.54 -0.2
106,938 - EX31_RS10900 0.54 +0.2
106,938 - EX31_RS10900 0.54 +0.5
106,938 - EX31_RS10900 0.54 +0.3
106,940 - EX31_RS10900 0.54 -1.1
106,965 + EX31_RS10900 0.57 -0.2
106,965 + EX31_RS10900 0.57 +0.6
106,966 - EX31_RS10900 0.57 -1.1
107,082 + EX31_RS10900 0.71 -1.1
107,167 - EX31_RS10900 0.81 -0.7
107,167 - EX31_RS10900 0.81 -0.0
107,409 + -0.7
107,409 + +0.4
107,686 - -1.0
107,878 + EX31_RS10905 0.16 -0.1
108,084 + EX31_RS10905 0.27 -0.4
108,149 - EX31_RS10905 0.30 -0.2
108,151 + EX31_RS10905 0.31 -0.1
108,151 + EX31_RS10905 0.31 -0.5
108,238 + EX31_RS10905 0.35 -0.0
108,238 + EX31_RS10905 0.35 -0.4
108,284 + EX31_RS10905 0.38 -0.6
108,285 - EX31_RS10905 0.38 +0.7

Or see this region's nucleotide sequence