Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03780 and EX31_RS03785 are separated by 4 nucleotides EX31_RS03785 and EX31_RS03790 are separated by 5 nucleotides EX31_RS03790 and EX31_RS03795 are separated by 82 nucleotides EX31_RS03795 and EX31_RS03800 are separated by 269 nucleotides
EX31_RS03780: EX31_RS03780 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 265,165 to 265,992
_RS03780
EX31_RS03785: EX31_RS03785 - Co2+/Mg2+ efflux protein ApaG, at 265,997 to 266,374
_RS03785
EX31_RS03790: EX31_RS03790 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 266,380 to 267,234
_RS03790
EX31_RS03795: EX31_RS03795 - type 3 dihydrofolate reductase, at 267,317 to 267,802
_RS03795
EX31_RS03800: EX31_RS03800 - threonine/serine exporter, at 268,072 to 268,542
_RS03800
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 265.990 kb on + strand at 265.996 kb on + strand at 265.997 kb on - strand at 266.002 kb on + strand at 266.002 kb on + strand at 266.002 kb on + strand at 266.002 kb on + strand at 266.002 kb on + strand at 266.003 kb on - strand at 266.003 kb on - strand at 266.003 kb on - strand at 266.035 kb on + strand, within EX31_RS03785 at 266.035 kb on + strand, within EX31_RS03785 at 266.035 kb on + strand, within EX31_RS03785 at 266.035 kb on + strand, within EX31_RS03785 at 266.035 kb on + strand, within EX31_RS03785 at 266.035 kb on + strand, within EX31_RS03785 at 266.036 kb on - strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.039 kb on + strand, within EX31_RS03785 at 266.040 kb on - strand, within EX31_RS03785 at 266.040 kb on - strand, within EX31_RS03785 at 266.087 kb on + strand, within EX31_RS03785 at 266.087 kb on + strand, within EX31_RS03785 at 266.087 kb on + strand, within EX31_RS03785 at 266.119 kb on + strand, within EX31_RS03785 at 266.119 kb on + strand, within EX31_RS03785 at 266.120 kb on - strand, within EX31_RS03785 at 266.151 kb on + strand, within EX31_RS03785 at 266.161 kb on + strand, within EX31_RS03785 at 266.240 kb on + strand, within EX31_RS03785 at 266.240 kb on + strand, within EX31_RS03785 at 266.242 kb on + strand, within EX31_RS03785 at 266.242 kb on + strand, within EX31_RS03785 at 266.242 kb on + strand, within EX31_RS03785 at 266.291 kb on + strand, within EX31_RS03785 at 266.291 kb on + strand, within EX31_RS03785 at 266.291 kb on + strand, within EX31_RS03785 at 266.292 kb on - strand, within EX31_RS03785 at 266.359 kb on + strand at 266.360 kb on - strand at 266.368 kb on - strand at 266.372 kb on + strand at 266.389 kb on + strand at 266.390 kb on - strand at 266.394 kb on + strand at 266.818 kb on - strand, within EX31_RS03790 at 266.822 kb on - strand, within EX31_RS03790 at 266.845 kb on + strand, within EX31_RS03790 at 266.845 kb on + strand, within EX31_RS03790 at 266.846 kb on - strand, within EX31_RS03790 at 267.048 kb on + strand, within EX31_RS03790 at 267.103 kb on + strand, within EX31_RS03790 at 267.104 kb on - strand, within EX31_RS03790 at 267.169 kb on + strand at 267.818 kb on - strand at 267.818 kb on - strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.911 kb on + strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.912 kb on - strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.913 kb on + strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.914 kb on - strand at 267.925 kb on + strand at 267.926 kb on - strand at 267.939 kb on - strand at 267.994 kb on + strand at 267.995 kb on - strand at 267.995 kb on - strand at 268.048 kb on + strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.049 kb on - strand at 268.061 kb on + strand at 268.061 kb on + strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.073 kb on + strand at 268.073 kb on + strand at 268.074 kb on - strand at 268.074 kb on - strand at 268.074 kb on - strand at 268.117 kb on + strand at 268.126 kb on - strand, within EX31_RS03800 at 268.126 kb on - strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.129 kb on + strand, within EX31_RS03800 at 268.130 kb on - strand, within EX31_RS03800 at 268.181 kb on - strand, within EX31_RS03800 at 268.197 kb on - strand, within EX31_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 265,990 + -0.6 265,996 + +0.5 265,997 - -0.0 266,002 + +0.1 266,002 + +0.4 266,002 + -1.7 266,002 + +0.2 266,002 + +0.2 266,003 - +0.2 266,003 - -0.2 266,003 - -0.7 266,035 + EX31_RS03785 0.10 +0.2 266,035 + EX31_RS03785 0.10 +0.2 266,035 + EX31_RS03785 0.10 +1.0 266,035 + EX31_RS03785 0.10 +0.1 266,035 + EX31_RS03785 0.10 -0.6 266,035 + EX31_RS03785 0.10 -0.2 266,036 - EX31_RS03785 0.10 -0.1 266,039 + EX31_RS03785 0.11 -0.6 266,039 + EX31_RS03785 0.11 +0.3 266,039 + EX31_RS03785 0.11 -0.3 266,039 + EX31_RS03785 0.11 +0.1 266,039 + EX31_RS03785 0.11 +0.1 266,039 + EX31_RS03785 0.11 -0.6 266,040 - EX31_RS03785 0.11 -2.1 266,040 - EX31_RS03785 0.11 -0.2 266,087 + EX31_RS03785 0.24 +0.7 266,087 + EX31_RS03785 0.24 +0.7 266,087 + EX31_RS03785 0.24 +0.4 266,119 + EX31_RS03785 0.32 +1.0 266,119 + EX31_RS03785 0.32 +0.3 266,120 - EX31_RS03785 0.33 -1.4 266,151 + EX31_RS03785 0.41 +0.3 266,161 + EX31_RS03785 0.43 -0.6 266,240 + EX31_RS03785 0.64 +0.2 266,240 + EX31_RS03785 0.64 -0.1 266,242 + EX31_RS03785 0.65 -0.2 266,242 + EX31_RS03785 0.65 -0.1 266,242 + EX31_RS03785 0.65 -0.8 266,291 + EX31_RS03785 0.78 -0.4 266,291 + EX31_RS03785 0.78 +0.8 266,291 + EX31_RS03785 0.78 +0.1 266,292 - EX31_RS03785 0.78 -0.7 266,359 + +0.6 266,360 - +0.3 266,368 - -0.6 266,372 + +0.3 266,389 + -2.3 266,390 - +0.2 266,394 + -1.0 266,818 - EX31_RS03790 0.51 +1.2 266,822 - EX31_RS03790 0.52 -0.3 266,845 + EX31_RS03790 0.54 -2.7 266,845 + EX31_RS03790 0.54 -2.0 266,846 - EX31_RS03790 0.55 -1.9 267,048 + EX31_RS03790 0.78 -0.2 267,103 + EX31_RS03790 0.85 -1.7 267,104 - EX31_RS03790 0.85 -1.7 267,169 + +1.0 267,818 - -1.6 267,818 - -0.9 267,911 + +0.2 267,911 + -0.1 267,911 + +0.2 267,911 + +0.4 267,912 - -0.3 267,912 - -0.2 267,912 - -1.2 267,912 - -0.0 267,913 + +0.7 267,913 + -0.0 267,913 + -0.1 267,913 + -0.9 267,913 + +0.1 267,914 - -1.4 267,914 - +0.0 267,914 - +0.2 267,914 - +0.8 267,914 - -0.4 267,914 - +0.3 267,914 - -0.3 267,914 - -0.6 267,925 + +0.4 267,926 - -0.7 267,939 - -0.2 267,994 + -1.4 267,995 - +0.4 267,995 - +0.1 268,048 + +1.5 268,049 - +0.8 268,049 - -0.1 268,049 - +0.1 268,049 - -0.0 268,061 + -0.9 268,061 + -0.0 268,062 - +0.1 268,062 - +0.1 268,062 - -0.6 268,062 - -0.1 268,073 + +1.7 268,073 + +0.2 268,074 - +1.3 268,074 - -1.5 268,074 - -1.5 268,117 + -0.6 268,126 - EX31_RS03800 0.11 -0.5 268,126 - EX31_RS03800 0.11 +0.3 268,129 + EX31_RS03800 0.12 +0.4 268,129 + EX31_RS03800 0.12 -1.2 268,129 + EX31_RS03800 0.12 +0.1 268,129 + EX31_RS03800 0.12 +0.2 268,129 + EX31_RS03800 0.12 -0.6 268,129 + EX31_RS03800 0.12 -0.2 268,129 + EX31_RS03800 0.12 +0.8 268,129 + EX31_RS03800 0.12 +0.5 268,130 - EX31_RS03800 0.12 +0.6 268,181 - EX31_RS03800 0.23 +0.7 268,197 - EX31_RS03800 0.27 -0.4
Or see this region's nucleotide sequence