Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02605 and EX31_RS02610 are separated by 397 nucleotides EX31_RS02610 and EX31_RS02615 are separated by 195 nucleotides
EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199
_RS02605
EX31_RS02610: EX31_RS02610 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 554,597 to 557,074
_RS02610
EX31_RS02615: EX31_RS02615 - lipase family protein, at 557,270 to 559,369
_RS02615
Position (kb) 554
555
556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.665 kb on + strand, within EX31_RS02605 at 553.674 kb on + strand, within EX31_RS02605 at 553.675 kb on - strand, within EX31_RS02605 at 553.890 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.896 kb on - strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 554.157 kb on + strand at 554.157 kb on + strand at 554.158 kb on - strand at 554.180 kb on + strand at 554.180 kb on + strand at 554.180 kb on + strand at 554.191 kb on + strand at 554.426 kb on + strand at 554.473 kb on + strand at 554.473 kb on + strand at 554.525 kb on + strand at 554.526 kb on - strand at 554.526 kb on - strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.557 kb on + strand at 554.558 kb on - strand at 554.558 kb on - strand at 554.558 kb on - strand at 554.564 kb on + strand at 554.564 kb on + strand at 554.564 kb on + strand at 554.571 kb on + strand at 554.611 kb on + strand at 554.690 kb on + strand at 554.690 kb on + strand at 554.691 kb on - strand at 554.691 kb on - strand at 554.703 kb on + strand at 554.703 kb on + strand at 554.704 kb on - strand at 554.717 kb on + strand at 554.774 kb on - strand at 554.818 kb on + strand at 554.818 kb on + strand at 554.822 kb on - strand at 554.953 kb on + strand, within EX31_RS02610 at 555.016 kb on + strand, within EX31_RS02610 at 555.016 kb on + strand, within EX31_RS02610 at 555.017 kb on - strand, within EX31_RS02610 at 555.079 kb on + strand, within EX31_RS02610 at 555.079 kb on + strand, within EX31_RS02610 at 555.080 kb on - strand, within EX31_RS02610 at 555.080 kb on - strand, within EX31_RS02610 at 555.293 kb on + strand, within EX31_RS02610 at 555.344 kb on + strand, within EX31_RS02610 at 555.398 kb on + strand, within EX31_RS02610 at 555.695 kb on + strand, within EX31_RS02610 at 555.696 kb on - strand, within EX31_RS02610 at 555.696 kb on - strand, within EX31_RS02610 at 555.709 kb on + strand, within EX31_RS02610 at 555.884 kb on + strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.885 kb on - strand, within EX31_RS02610 at 555.924 kb on - strand, within EX31_RS02610 at 555.924 kb on - strand, within EX31_RS02610 at 555.924 kb on - strand, within EX31_RS02610 at 555.924 kb on - strand, within EX31_RS02610 at 555.947 kb on + strand, within EX31_RS02610 at 555.948 kb on - strand, within EX31_RS02610 at 555.948 kb on - strand, within EX31_RS02610 at 556.013 kb on + strand, within EX31_RS02610 at 556.014 kb on - strand, within EX31_RS02610 at 556.014 kb on - strand, within EX31_RS02610 at 556.124 kb on + strand, within EX31_RS02610 at 556.124 kb on + strand, within EX31_RS02610 at 556.125 kb on - strand, within EX31_RS02610 at 556.125 kb on - strand, within EX31_RS02610 at 556.125 kb on - strand, within EX31_RS02610 at 556.259 kb on - strand, within EX31_RS02610 at 556.306 kb on + strand, within EX31_RS02610 at 556.345 kb on + strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.399 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.529 kb on - strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.864 kb on + strand at 556.878 kb on - strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 557.039 kb on + strand at 557.040 kb on - strand at 557.040 kb on - strand at 557.072 kb on + strand at 557.073 kb on - strand at 557.079 kb on + strand at 557.080 kb on - strand at 557.148 kb on - strand at 557.148 kb on - strand at 557.192 kb on + strand at 557.193 kb on - strand at 557.193 kb on - strand at 557.196 kb on - strand at 557.230 kb on - strand at 557.320 kb on + strand at 557.320 kb on + strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.331 kb on - strand at 557.386 kb on + strand at 557.386 kb on + strand at 557.386 kb on + strand at 557.424 kb on - strand at 557.424 kb on - strand at 557.469 kb on - strand at 557.473 kb on + strand at 557.483 kb on + strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.577 kb on + strand, within EX31_RS02615 at 557.577 kb on + strand, within EX31_RS02615 at 557.692 kb on + strand, within EX31_RS02615 at 557.712 kb on + strand, within EX31_RS02615 at 557.712 kb on + strand, within EX31_RS02615 at 557.713 kb on - strand, within EX31_RS02615 at 557.713 kb on - strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.750 kb on + strand, within EX31_RS02615 at 557.751 kb on - strand, within EX31_RS02615 at 557.863 kb on - strand, within EX31_RS02615 at 557.967 kb on + strand, within EX31_RS02615 at 558.019 kb on + strand, within EX31_RS02615 at 558.020 kb on - strand, within EX31_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 553,665 + EX31_RS02605 0.40 -0.8 553,674 + EX31_RS02605 0.41 -2.6 553,675 - EX31_RS02605 0.41 -0.7 553,890 + EX31_RS02605 0.65 +0.1 553,893 + EX31_RS02605 0.65 -1.2 553,893 + EX31_RS02605 0.65 -1.2 553,894 - EX31_RS02605 0.66 +0.2 553,894 - EX31_RS02605 0.66 -1.5 553,894 - EX31_RS02605 0.66 -1.3 553,896 - EX31_RS02605 0.66 -0.4 553,955 + EX31_RS02605 0.72 -0.2 553,955 + EX31_RS02605 0.72 -1.0 553,955 + EX31_RS02605 0.72 -1.1 553,955 + EX31_RS02605 0.72 +1.0 553,956 - EX31_RS02605 0.73 -2.2 553,956 - EX31_RS02605 0.73 -0.3 553,956 - EX31_RS02605 0.73 -1.0 553,956 - EX31_RS02605 0.73 -0.3 553,956 - EX31_RS02605 0.73 -0.5 553,957 + EX31_RS02605 0.73 +0.6 553,957 + EX31_RS02605 0.73 -1.4 553,957 + EX31_RS02605 0.73 -1.0 553,957 + EX31_RS02605 0.73 -0.1 553,957 + EX31_RS02605 0.73 +0.6 553,958 - EX31_RS02605 0.73 +0.6 553,958 - EX31_RS02605 0.73 +0.4 553,958 - EX31_RS02605 0.73 +0.5 553,958 - EX31_RS02605 0.73 +0.1 553,958 - EX31_RS02605 0.73 -0.7 553,958 - EX31_RS02605 0.73 -0.6 553,958 - EX31_RS02605 0.73 -0.5 553,958 - EX31_RS02605 0.73 -0.3 553,958 - EX31_RS02605 0.73 -0.5 553,959 + EX31_RS02605 0.73 +0.7 553,959 + EX31_RS02605 0.73 -0.1 553,959 + EX31_RS02605 0.73 -1.1 553,959 + EX31_RS02605 0.73 -0.2 553,959 + EX31_RS02605 0.73 +0.6 553,959 + EX31_RS02605 0.73 -0.7 553,959 + EX31_RS02605 0.73 +0.1 553,959 + EX31_RS02605 0.73 -0.8 553,959 + EX31_RS02605 0.73 +0.3 553,959 + EX31_RS02605 0.73 +0.6 553,959 + EX31_RS02605 0.73 -0.6 553,960 - EX31_RS02605 0.73 +0.8 553,960 - EX31_RS02605 0.73 -0.1 554,157 + -0.8 554,157 + +0.1 554,158 - +1.4 554,180 + +0.5 554,180 + +0.3 554,180 + -1.8 554,191 + +1.4 554,426 + +0.1 554,473 + +0.5 554,473 + +0.4 554,525 + -1.2 554,526 - -1.2 554,526 - +0.1 554,557 + +0.6 554,557 + -0.1 554,557 + -0.9 554,557 + +0.1 554,557 + -1.5 554,558 - +0.2 554,558 - -0.2 554,558 - -1.0 554,564 + +0.1 554,564 + +0.9 554,564 + -1.5 554,571 + +0.5 554,611 + -0.6 554,690 + -1.6 554,690 + -1.5 554,691 - -2.1 554,691 - -0.0 554,703 + +0.5 554,703 + -0.7 554,704 - -0.1 554,717 + -0.7 554,774 - +0.8 554,818 + +2.6 554,818 + +0.2 554,822 - +0.6 554,953 + EX31_RS02610 0.14 +0.5 555,016 + EX31_RS02610 0.17 +0.3 555,016 + EX31_RS02610 0.17 +0.2 555,017 - EX31_RS02610 0.17 +1.0 555,079 + EX31_RS02610 0.19 +1.4 555,079 + EX31_RS02610 0.19 +1.1 555,080 - EX31_RS02610 0.19 -0.2 555,080 - EX31_RS02610 0.19 +0.5 555,293 + EX31_RS02610 0.28 -1.3 555,344 + EX31_RS02610 0.30 +1.5 555,398 + EX31_RS02610 0.32 +1.0 555,695 + EX31_RS02610 0.44 +1.4 555,696 - EX31_RS02610 0.44 -0.7 555,696 - EX31_RS02610 0.44 +0.7 555,709 + EX31_RS02610 0.45 +0.6 555,884 + EX31_RS02610 0.52 +0.2 555,885 - EX31_RS02610 0.52 -1.0 555,885 - EX31_RS02610 0.52 -0.6 555,885 - EX31_RS02610 0.52 +0.0 555,885 - EX31_RS02610 0.52 -0.6 555,885 - EX31_RS02610 0.52 +1.0 555,885 - EX31_RS02610 0.52 +0.9 555,885 - EX31_RS02610 0.52 +0.1 555,924 - EX31_RS02610 0.54 +0.2 555,924 - EX31_RS02610 0.54 +0.9 555,924 - EX31_RS02610 0.54 -0.2 555,924 - EX31_RS02610 0.54 +0.9 555,947 + EX31_RS02610 0.54 -0.8 555,948 - EX31_RS02610 0.55 -0.1 555,948 - EX31_RS02610 0.55 -1.2 556,013 + EX31_RS02610 0.57 -0.2 556,014 - EX31_RS02610 0.57 +0.1 556,014 - EX31_RS02610 0.57 -0.5 556,124 + EX31_RS02610 0.62 -0.2 556,124 + EX31_RS02610 0.62 +0.0 556,125 - EX31_RS02610 0.62 +0.3 556,125 - EX31_RS02610 0.62 -0.1 556,125 - EX31_RS02610 0.62 +0.7 556,259 - EX31_RS02610 0.67 -0.6 556,306 + EX31_RS02610 0.69 +1.1 556,345 + EX31_RS02610 0.71 -0.2 556,346 - EX31_RS02610 0.71 -0.2 556,346 - EX31_RS02610 0.71 -0.2 556,346 - EX31_RS02610 0.71 -0.8 556,399 + EX31_RS02610 0.73 +0.4 556,418 + EX31_RS02610 0.73 -0.2 556,418 + EX31_RS02610 0.73 +0.5 556,418 + EX31_RS02610 0.73 +0.6 556,418 + EX31_RS02610 0.73 -2.1 556,529 - EX31_RS02610 0.78 -0.1 556,550 + EX31_RS02610 0.79 -1.4 556,550 + EX31_RS02610 0.79 -0.4 556,550 + EX31_RS02610 0.79 +0.3 556,550 + EX31_RS02610 0.79 -2.5 556,550 + EX31_RS02610 0.79 -0.8 556,550 + EX31_RS02610 0.79 -1.3 556,550 + EX31_RS02610 0.79 -0.1 556,550 + EX31_RS02610 0.79 +0.1 556,550 + EX31_RS02610 0.79 -0.3 556,550 + EX31_RS02610 0.79 +0.2 556,551 - EX31_RS02610 0.79 +0.0 556,551 - EX31_RS02610 0.79 -0.3 556,551 - EX31_RS02610 0.79 -0.2 556,551 - EX31_RS02610 0.79 -1.7 556,551 - EX31_RS02610 0.79 -0.3 556,864 + -0.8 556,878 - +0.0 556,961 + +0.0 556,961 + -0.7 556,961 + +0.1 556,962 - -1.3 556,988 + +1.4 556,988 + +0.7 556,988 + +0.1 556,988 + -1.8 556,988 + +1.6 556,989 - +0.9 556,989 - -0.1 556,989 - -0.3 556,989 - -0.4 556,989 - -0.1 556,989 - +0.7 556,989 - +0.9 556,989 - +0.3 557,039 + -0.2 557,040 - -0.3 557,040 - -0.4 557,072 + +1.2 557,073 - -1.5 557,079 + -0.3 557,080 - -2.7 557,148 - +0.2 557,148 - +0.7 557,192 + +0.3 557,193 - +0.1 557,193 - +0.2 557,196 - -1.0 557,230 - +0.1 557,320 + +0.2 557,320 + +1.2 557,321 - +0.5 557,321 - +0.2 557,321 - +0.7 557,321 - +0.4 557,331 - +0.1 557,386 + -0.4 557,386 + +0.4 557,386 + -1.7 557,424 - +0.7 557,424 - -0.5 557,469 - +0.1 557,473 + -0.1 557,483 + EX31_RS02615 0.10 +0.5 557,504 - EX31_RS02615 0.11 -0.2 557,504 - EX31_RS02615 0.11 +0.7 557,504 - EX31_RS02615 0.11 -0.1 557,577 + EX31_RS02615 0.15 +0.4 557,577 + EX31_RS02615 0.15 +1.3 557,692 + EX31_RS02615 0.20 +0.0 557,712 + EX31_RS02615 0.21 +0.4 557,712 + EX31_RS02615 0.21 -2.0 557,713 - EX31_RS02615 0.21 -0.4 557,713 - EX31_RS02615 0.21 -0.6 557,740 + EX31_RS02615 0.22 -0.1 557,740 + EX31_RS02615 0.22 +0.8 557,740 + EX31_RS02615 0.22 -0.3 557,740 + EX31_RS02615 0.22 -0.0 557,741 - EX31_RS02615 0.22 -0.2 557,741 - EX31_RS02615 0.22 +0.1 557,741 - EX31_RS02615 0.22 -0.5 557,750 + EX31_RS02615 0.23 -0.0 557,751 - EX31_RS02615 0.23 +1.3 557,863 - EX31_RS02615 0.28 +0.3 557,967 + EX31_RS02615 0.33 -0.1 558,019 + EX31_RS02615 0.36 -1.2 558,020 - EX31_RS02615 0.36 -1.1
Or see this region's nucleotide sequence