Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02590 and EX31_RS02595 overlap by 4 nucleotides EX31_RS02595 and EX31_RS02600 are separated by 93 nucleotides EX31_RS02600 and EX31_RS02605 are separated by 140 nucleotides
EX31_RS02590: EX31_RS02590 - nucleoside hydrolase, at 549,687 to 550,637
_RS02590
EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518
_RS02595
EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171
_RS02600
EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199
_RS02605
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1 at 550.754 kb on - strand, within EX31_RS02595 at 550.756 kb on + strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.757 kb on - strand, within EX31_RS02595 at 550.768 kb on + strand, within EX31_RS02595 at 550.773 kb on + strand, within EX31_RS02595 at 550.773 kb on + strand, within EX31_RS02595 at 550.774 kb on - strand, within EX31_RS02595 at 550.774 kb on - strand, within EX31_RS02595 at 550.857 kb on + strand, within EX31_RS02595 at 550.885 kb on + strand, within EX31_RS02595 at 550.886 kb on - strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.942 kb on + strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.943 kb on - strand, within EX31_RS02595 at 550.961 kb on + strand, within EX31_RS02595 at 550.961 kb on + strand, within EX31_RS02595 at 550.962 kb on - strand, within EX31_RS02595 at 551.029 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.032 kb on + strand, within EX31_RS02595 at 551.033 kb on - strand, within EX31_RS02595 at 551.033 kb on - strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.034 kb on + strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.035 kb on - strand, within EX31_RS02595 at 551.042 kb on - strand, within EX31_RS02595 at 551.042 kb on - strand, within EX31_RS02595 at 551.111 kb on - strand, within EX31_RS02595 at 551.112 kb on + strand, within EX31_RS02595 at 551.113 kb on - strand, within EX31_RS02595 at 551.113 kb on - strand, within EX31_RS02595 at 551.337 kb on - strand, within EX31_RS02595 at 551.491 kb on - strand at 551.518 kb on + strand at 551.519 kb on - strand at 551.519 kb on - strand at 551.519 kb on - strand at 551.535 kb on - strand at 551.538 kb on - strand at 551.538 kb on - strand at 551.542 kb on + strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.543 kb on - strand at 551.545 kb on + strand at 551.546 kb on - strand at 551.546 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.551 kb on - strand at 551.553 kb on + strand at 551.644 kb on + strand at 551.667 kb on + strand at 551.667 kb on + strand at 551.668 kb on - strand at 551.668 kb on - strand at 551.668 kb on - strand at 551.671 kb on + strand at 551.671 kb on + strand at 551.672 kb on - strand at 551.672 kb on - strand at 551.672 kb on - strand at 551.672 kb on - strand at 551.672 kb on - strand at 551.673 kb on + strand at 551.673 kb on + strand at 551.674 kb on - strand at 551.674 kb on - strand at 551.674 kb on - strand at 551.698 kb on - strand at 551.698 kb on - strand at 551.815 kb on + strand, within EX31_RS02600 at 551.974 kb on - strand, within EX31_RS02600 at 551.974 kb on - strand, within EX31_RS02600 at 552.008 kb on - strand, within EX31_RS02600 at 552.053 kb on - strand, within EX31_RS02600 at 552.154 kb on - strand, within EX31_RS02600 at 552.190 kb on - strand, within EX31_RS02600 at 552.190 kb on - strand, within EX31_RS02600 at 552.190 kb on - strand, within EX31_RS02600 at 552.365 kb on + strand, within EX31_RS02600 at 552.366 kb on - strand, within EX31_RS02600 at 552.366 kb on - strand, within EX31_RS02600 at 552.369 kb on + strand, within EX31_RS02600 at 552.369 kb on + strand, within EX31_RS02600 at 552.376 kb on + strand, within EX31_RS02600 at 552.377 kb on - strand, within EX31_RS02600 at 552.460 kb on + strand, within EX31_RS02600 at 552.461 kb on - strand, within EX31_RS02600 at 552.461 kb on - strand, within EX31_RS02600 at 552.530 kb on - strand, within EX31_RS02600 at 552.688 kb on + strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.689 kb on - strand, within EX31_RS02600 at 552.701 kb on + strand, within EX31_RS02600 at 552.702 kb on - strand, within EX31_RS02600 at 552.709 kb on + strand, within EX31_RS02600 at 552.709 kb on + strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.710 kb on - strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.713 kb on + strand, within EX31_RS02600 at 552.714 kb on - strand, within EX31_RS02600 at 552.714 kb on - strand, within EX31_RS02600 at 552.716 kb on + strand, within EX31_RS02600 at 552.716 kb on + strand, within EX31_RS02600 at 552.717 kb on - strand, within EX31_RS02600 at 552.793 kb on - strand, within EX31_RS02600 at 552.793 kb on - strand, within EX31_RS02600 at 552.800 kb on - strand, within EX31_RS02600 at 552.800 kb on - strand, within EX31_RS02600 at 552.802 kb on - strand, within EX31_RS02600 at 552.966 kb on - strand, within EX31_RS02600 at 553.004 kb on + strand, within EX31_RS02600 at 553.004 kb on + strand, within EX31_RS02600 at 553.005 kb on - strand, within EX31_RS02600 at 553.041 kb on + strand at 553.057 kb on + strand at 553.087 kb on + strand at 553.088 kb on - strand at 553.088 kb on - strand at 553.088 kb on - strand at 553.104 kb on - strand at 553.177 kb on + strand at 553.177 kb on + strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.189 kb on - strand at 553.213 kb on - strand at 553.223 kb on - strand at 553.235 kb on - strand at 553.282 kb on - strand at 553.311 kb on + strand at 553.334 kb on + strand at 553.335 kb on - strand at 553.531 kb on + strand, within EX31_RS02605 at 553.531 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.548 kb on + strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.549 kb on - strand, within EX31_RS02605 at 553.557 kb on + strand, within EX31_RS02605 at 553.571 kb on + strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.572 kb on - strand, within EX31_RS02605 at 553.665 kb on + strand, within EX31_RS02605 at 553.674 kb on + strand, within EX31_RS02605 at 553.675 kb on - strand, within EX31_RS02605 at 553.890 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.893 kb on + strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.894 kb on - strand, within EX31_RS02605 at 553.896 kb on - strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.955 kb on + strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.956 kb on - strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.957 kb on + strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.958 kb on - strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.959 kb on + strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 553.960 kb on - strand, within EX31_RS02605 at 554.157 kb on + strand at 554.157 kb on + strand at 554.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 550,754 - EX31_RS02595 0.14 -1.1 550,756 + EX31_RS02595 0.14 -0.6 550,757 - EX31_RS02595 0.14 -0.5 550,757 - EX31_RS02595 0.14 -1.1 550,757 - EX31_RS02595 0.14 -0.4 550,757 - EX31_RS02595 0.14 -0.6 550,768 + EX31_RS02595 0.15 +0.6 550,773 + EX31_RS02595 0.16 +0.3 550,773 + EX31_RS02595 0.16 +0.4 550,774 - EX31_RS02595 0.16 -1.3 550,774 - EX31_RS02595 0.16 -1.0 550,857 + EX31_RS02595 0.25 +0.3 550,885 + EX31_RS02595 0.28 -0.4 550,886 - EX31_RS02595 0.28 -0.7 550,942 + EX31_RS02595 0.35 -0.4 550,942 + EX31_RS02595 0.35 -2.0 550,942 + EX31_RS02595 0.35 +0.5 550,942 + EX31_RS02595 0.35 -0.5 550,943 - EX31_RS02595 0.35 -0.6 550,943 - EX31_RS02595 0.35 +0.1 550,943 - EX31_RS02595 0.35 -1.1 550,943 - EX31_RS02595 0.35 +0.4 550,943 - EX31_RS02595 0.35 -2.5 550,943 - EX31_RS02595 0.35 +0.1 550,961 + EX31_RS02595 0.37 -0.1 550,961 + EX31_RS02595 0.37 +0.0 550,962 - EX31_RS02595 0.37 +0.4 551,029 + EX31_RS02595 0.45 +1.2 551,032 + EX31_RS02595 0.45 -0.1 551,032 + EX31_RS02595 0.45 +0.1 551,032 + EX31_RS02595 0.45 -0.9 551,032 + EX31_RS02595 0.45 +0.2 551,033 - EX31_RS02595 0.45 -0.3 551,033 - EX31_RS02595 0.45 -0.9 551,034 + EX31_RS02595 0.45 -1.8 551,034 + EX31_RS02595 0.45 -0.1 551,034 + EX31_RS02595 0.45 +0.2 551,034 + EX31_RS02595 0.45 -0.9 551,035 - EX31_RS02595 0.45 -0.7 551,035 - EX31_RS02595 0.45 +0.2 551,035 - EX31_RS02595 0.45 +0.6 551,035 - EX31_RS02595 0.45 +0.2 551,035 - EX31_RS02595 0.45 +0.4 551,035 - EX31_RS02595 0.45 -0.1 551,035 - EX31_RS02595 0.45 -2.1 551,035 - EX31_RS02595 0.45 -0.3 551,035 - EX31_RS02595 0.45 +0.8 551,035 - EX31_RS02595 0.45 -0.6 551,042 - EX31_RS02595 0.46 +0.0 551,042 - EX31_RS02595 0.46 +0.9 551,111 - EX31_RS02595 0.54 +0.2 551,112 + EX31_RS02595 0.54 -1.2 551,113 - EX31_RS02595 0.54 -0.5 551,113 - EX31_RS02595 0.54 -0.7 551,337 - EX31_RS02595 0.79 +0.6 551,491 - +1.0 551,518 + +0.1 551,519 - -1.5 551,519 - -0.9 551,519 - -0.9 551,535 - +0.1 551,538 - -0.6 551,538 - -0.7 551,542 + +0.1 551,543 - -1.1 551,543 - +0.5 551,543 - -0.5 551,543 - -0.8 551,543 - -0.1 551,543 - +0.7 551,543 - +0.2 551,543 - -0.3 551,543 - -0.1 551,543 - -0.5 551,543 - +0.7 551,543 - -0.5 551,543 - -0.2 551,543 - -0.7 551,543 - -0.9 551,545 + +0.2 551,546 - -1.1 551,546 - -0.5 551,551 - +0.3 551,551 - -0.5 551,551 - +0.2 551,551 - +0.1 551,553 + -0.9 551,644 + -0.2 551,667 + -0.6 551,667 + +0.1 551,668 - +0.8 551,668 - +0.4 551,668 - -0.2 551,671 + -0.6 551,671 + -0.9 551,672 - +0.3 551,672 - +0.5 551,672 - +0.5 551,672 - -0.6 551,672 - +0.5 551,673 + -0.8 551,673 + +0.0 551,674 - +0.5 551,674 - +0.4 551,674 - +1.0 551,698 - +0.1 551,698 - -0.5 551,815 + EX31_RS02600 0.13 +0.6 551,974 - EX31_RS02600 0.23 +0.4 551,974 - EX31_RS02600 0.23 -0.1 552,008 - EX31_RS02600 0.25 -0.6 552,053 - EX31_RS02600 0.28 +1.5 552,154 - EX31_RS02600 0.35 +0.1 552,190 - EX31_RS02600 0.37 +0.2 552,190 - EX31_RS02600 0.37 +1.2 552,190 - EX31_RS02600 0.37 +0.6 552,365 + EX31_RS02600 0.48 +0.1 552,366 - EX31_RS02600 0.48 +0.3 552,366 - EX31_RS02600 0.48 -0.2 552,369 + EX31_RS02600 0.49 -0.0 552,369 + EX31_RS02600 0.49 +0.1 552,376 + EX31_RS02600 0.49 +0.0 552,377 - EX31_RS02600 0.49 +0.3 552,460 + EX31_RS02600 0.54 +0.5 552,461 - EX31_RS02600 0.54 +1.0 552,461 - EX31_RS02600 0.54 -0.4 552,530 - EX31_RS02600 0.59 +0.3 552,688 + EX31_RS02600 0.69 -0.1 552,689 - EX31_RS02600 0.69 -0.4 552,689 - EX31_RS02600 0.69 -0.5 552,689 - EX31_RS02600 0.69 +0.7 552,701 + EX31_RS02600 0.70 -0.4 552,702 - EX31_RS02600 0.70 +0.0 552,709 + EX31_RS02600 0.70 +0.7 552,709 + EX31_RS02600 0.70 +1.4 552,710 - EX31_RS02600 0.70 +1.0 552,710 - EX31_RS02600 0.70 +1.5 552,710 - EX31_RS02600 0.70 +0.7 552,710 - EX31_RS02600 0.70 +0.8 552,713 + EX31_RS02600 0.71 -0.6 552,713 + EX31_RS02600 0.71 +0.9 552,713 + EX31_RS02600 0.71 -0.4 552,713 + EX31_RS02600 0.71 +0.1 552,714 - EX31_RS02600 0.71 +0.5 552,714 - EX31_RS02600 0.71 +1.1 552,716 + EX31_RS02600 0.71 +1.2 552,716 + EX31_RS02600 0.71 -1.6 552,717 - EX31_RS02600 0.71 -0.1 552,793 - EX31_RS02600 0.76 -0.7 552,793 - EX31_RS02600 0.76 +0.6 552,800 - EX31_RS02600 0.76 -0.5 552,800 - EX31_RS02600 0.76 -1.3 552,802 - EX31_RS02600 0.76 -0.2 552,966 - EX31_RS02600 0.87 +0.4 553,004 + EX31_RS02600 0.89 +0.6 553,004 + EX31_RS02600 0.89 -1.8 553,005 - EX31_RS02600 0.89 -1.1 553,041 + -0.6 553,057 + -1.3 553,087 + -0.3 553,088 - -0.9 553,088 - +1.0 553,088 - +1.6 553,104 - -0.1 553,177 + +0.6 553,177 + -0.5 553,189 - +0.3 553,189 - +0.3 553,189 - +0.3 553,189 - -0.2 553,213 - -0.6 553,223 - -0.4 553,235 - +0.1 553,282 - +0.4 553,311 + -0.3 553,334 + +0.2 553,335 - +0.9 553,531 + EX31_RS02605 0.25 -1.6 553,531 + EX31_RS02605 0.25 -0.4 553,548 + EX31_RS02605 0.27 -0.7 553,548 + EX31_RS02605 0.27 +0.4 553,548 + EX31_RS02605 0.27 +0.6 553,549 - EX31_RS02605 0.27 -1.1 553,549 - EX31_RS02605 0.27 -2.5 553,549 - EX31_RS02605 0.27 -0.4 553,549 - EX31_RS02605 0.27 +0.3 553,549 - EX31_RS02605 0.27 +0.7 553,549 - EX31_RS02605 0.27 -0.3 553,549 - EX31_RS02605 0.27 -2.0 553,549 - EX31_RS02605 0.27 +1.0 553,557 + EX31_RS02605 0.28 +0.5 553,571 + EX31_RS02605 0.29 -0.1 553,572 - EX31_RS02605 0.29 -0.8 553,572 - EX31_RS02605 0.29 +0.8 553,572 - EX31_RS02605 0.29 -0.0 553,572 - EX31_RS02605 0.29 -0.3 553,665 + EX31_RS02605 0.40 -0.8 553,674 + EX31_RS02605 0.41 -2.6 553,675 - EX31_RS02605 0.41 -0.7 553,890 + EX31_RS02605 0.65 +0.1 553,893 + EX31_RS02605 0.65 -1.2 553,893 + EX31_RS02605 0.65 -1.2 553,894 - EX31_RS02605 0.66 +0.2 553,894 - EX31_RS02605 0.66 -1.5 553,894 - EX31_RS02605 0.66 -1.3 553,896 - EX31_RS02605 0.66 -0.4 553,955 + EX31_RS02605 0.72 -0.2 553,955 + EX31_RS02605 0.72 -1.0 553,955 + EX31_RS02605 0.72 -1.1 553,955 + EX31_RS02605 0.72 +1.0 553,956 - EX31_RS02605 0.73 -2.2 553,956 - EX31_RS02605 0.73 -0.3 553,956 - EX31_RS02605 0.73 -1.0 553,956 - EX31_RS02605 0.73 -0.3 553,956 - EX31_RS02605 0.73 -0.5 553,957 + EX31_RS02605 0.73 +0.6 553,957 + EX31_RS02605 0.73 -1.4 553,957 + EX31_RS02605 0.73 -1.0 553,957 + EX31_RS02605 0.73 -0.1 553,957 + EX31_RS02605 0.73 +0.6 553,958 - EX31_RS02605 0.73 +0.6 553,958 - EX31_RS02605 0.73 +0.4 553,958 - EX31_RS02605 0.73 +0.5 553,958 - EX31_RS02605 0.73 +0.1 553,958 - EX31_RS02605 0.73 -0.7 553,958 - EX31_RS02605 0.73 -0.6 553,958 - EX31_RS02605 0.73 -0.5 553,958 - EX31_RS02605 0.73 -0.3 553,958 - EX31_RS02605 0.73 -0.5 553,959 + EX31_RS02605 0.73 +0.7 553,959 + EX31_RS02605 0.73 -0.1 553,959 + EX31_RS02605 0.73 -1.1 553,959 + EX31_RS02605 0.73 -0.2 553,959 + EX31_RS02605 0.73 +0.6 553,959 + EX31_RS02605 0.73 -0.7 553,959 + EX31_RS02605 0.73 +0.1 553,959 + EX31_RS02605 0.73 -0.8 553,959 + EX31_RS02605 0.73 +0.3 553,959 + EX31_RS02605 0.73 +0.6 553,959 + EX31_RS02605 0.73 -0.6 553,960 - EX31_RS02605 0.73 +0.8 553,960 - EX31_RS02605 0.73 -0.1 554,157 + -0.8 554,157 + +0.1 554,158 - +1.4
Or see this region's nucleotide sequence