Strain Fitness in Rahnella sp. WP5 around EX31_RS00235

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00230 and EX31_RS00235 overlap by 4 nucleotidesEX31_RS00235 and EX31_RS00240 are separated by 68 nucleotides EX31_RS00230: EX31_RS00230 - ABC transporter permease, at 46,723 to 47,736 _RS00230 EX31_RS00235: EX31_RS00235 - sugar ABC transporter ATP-binding protein, at 47,733 to 49,247 _RS00235 EX31_RS00240: EX31_RS00240 - rhamnose ABC transporter substrate-binding protein, at 49,316 to 50,308 _RS00240 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -1 0 1at 46.794 kb on + strandat 46.999 kb on + strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.132 kb on + strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.166 kb on - strand, within EX31_RS00230at 47.202 kb on - strand, within EX31_RS00230at 47.337 kb on + strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.415 kb on + strand, within EX31_RS00230at 47.683 kb on + strandat 47.684 kb on - strandat 47.684 kb on - strandat 47.886 kb on - strand, within EX31_RS00235at 47.921 kb on + strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 47.922 kb on - strand, within EX31_RS00235at 48.101 kb on - strand, within EX31_RS00235at 48.153 kb on - strand, within EX31_RS00235at 48.238 kb on + strand, within EX31_RS00235at 48.238 kb on + strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.239 kb on - strand, within EX31_RS00235at 48.337 kb on - strand, within EX31_RS00235at 48.520 kb on - strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.577 kb on + strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.578 kb on - strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.601 kb on + strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.602 kb on - strand, within EX31_RS00235at 48.605 kb on - strand, within EX31_RS00235at 48.807 kb on + strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.808 kb on - strand, within EX31_RS00235at 48.840 kb on + strand, within EX31_RS00235at 48.841 kb on - strand, within EX31_RS00235at 48.841 kb on - strand, within EX31_RS00235at 48.938 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.046 kb on + strand, within EX31_RS00235at 49.047 kb on - strand, within EX31_RS00235at 49.047 kb on - strand, within EX31_RS00235at 49.140 kb on + strandat 49.173 kb on - strandat 49.176 kb on + strandat 49.177 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.272 kb on - strandat 49.336 kb on + strandat 49.473 kb on + strand, within EX31_RS00240at 49.473 kb on + strand, within EX31_RS00240at 49.473 kb on + strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.474 kb on - strand, within EX31_RS00240at 49.485 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.581 kb on + strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.582 kb on - strand, within EX31_RS00240at 49.675 kb on - strand, within EX31_RS00240at 49.839 kb on - strand, within EX31_RS00240at 49.839 kb on - strand, within EX31_RS00240at 49.927 kb on + strand, within EX31_RS00240at 49.927 kb on + strand, within EX31_RS00240at 49.928 kb on - strand, within EX31_RS00240at 49.981 kb on + strand, within EX31_RS00240at 49.982 kb on - strand, within EX31_RS00240at 50.090 kb on + strand, within EX31_RS00240at 50.091 kb on - strand, within EX31_RS00240at 50.128 kb on - strand, within EX31_RS00240at 50.128 kb on - strand, within EX31_RS00240at 50.156 kb on - strand, within EX31_RS00240at 50.201 kb on - strand, within EX31_RS00240

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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46,794 + +0.6
46,999 + EX31_RS00230 0.27 +1.1
47,028 - EX31_RS00230 0.30 -0.4
47,028 - EX31_RS00230 0.30 -0.4
47,132 + EX31_RS00230 0.40 -0.0
47,133 - EX31_RS00230 0.40 -0.9
47,133 - EX31_RS00230 0.40 +0.9
47,133 - EX31_RS00230 0.40 +0.5
47,165 + EX31_RS00230 0.44 +0.8
47,165 + EX31_RS00230 0.44 +0.4
47,166 - EX31_RS00230 0.44 +0.6
47,202 - EX31_RS00230 0.47 -0.6
47,337 + EX31_RS00230 0.61 +0.5
47,338 - EX31_RS00230 0.61 -0.4
47,338 - EX31_RS00230 0.61 +0.7
47,415 + EX31_RS00230 0.68 -1.1
47,683 + +0.2
47,684 - +0.1
47,684 - -1.0
47,886 - EX31_RS00235 0.10 +0.2
47,921 + EX31_RS00235 0.12 +0.6
47,922 - EX31_RS00235 0.12 +0.9
47,922 - EX31_RS00235 0.12 -0.6
47,922 - EX31_RS00235 0.12 -0.0
48,101 - EX31_RS00235 0.24 -0.3
48,153 - EX31_RS00235 0.28 +0.5
48,238 + EX31_RS00235 0.33 +0.2
48,238 + EX31_RS00235 0.33 +1.1
48,239 - EX31_RS00235 0.33 +0.5
48,239 - EX31_RS00235 0.33 +0.6
48,239 - EX31_RS00235 0.33 +0.6
48,239 - EX31_RS00235 0.33 +0.8
48,239 - EX31_RS00235 0.33 +0.7
48,239 - EX31_RS00235 0.33 -0.4
48,337 - EX31_RS00235 0.40 +0.5
48,520 - EX31_RS00235 0.52 +0.6
48,577 + EX31_RS00235 0.56 +0.4
48,577 + EX31_RS00235 0.56 +0.1
48,577 + EX31_RS00235 0.56 -0.4
48,577 + EX31_RS00235 0.56 -0.7
48,578 - EX31_RS00235 0.56 -0.9
48,578 - EX31_RS00235 0.56 +1.2
48,578 - EX31_RS00235 0.56 -0.0
48,578 - EX31_RS00235 0.56 +1.1
48,578 - EX31_RS00235 0.56 -0.8
48,601 + EX31_RS00235 0.57 -0.1
48,601 + EX31_RS00235 0.57 -1.3
48,601 + EX31_RS00235 0.57 +1.2
48,601 + EX31_RS00235 0.57 +0.3
48,602 - EX31_RS00235 0.57 +1.7
48,602 - EX31_RS00235 0.57 -0.6
48,602 - EX31_RS00235 0.57 +1.0
48,602 - EX31_RS00235 0.57 -0.8
48,605 - EX31_RS00235 0.58 -0.9
48,807 + EX31_RS00235 0.71 +1.6
48,808 - EX31_RS00235 0.71 -0.4
48,808 - EX31_RS00235 0.71 +0.6
48,808 - EX31_RS00235 0.71 -1.2
48,840 + EX31_RS00235 0.73 -0.8
48,841 - EX31_RS00235 0.73 -0.3
48,841 - EX31_RS00235 0.73 +1.1
48,938 + EX31_RS00235 0.80 -0.1
49,046 + EX31_RS00235 0.87 +0.6
49,046 + EX31_RS00235 0.87 -1.0
49,046 + EX31_RS00235 0.87 +0.3
49,047 - EX31_RS00235 0.87 +0.6
49,047 - EX31_RS00235 0.87 -0.7
49,140 + +0.2
49,173 - -0.2
49,176 + -0.5
49,177 - +0.4
49,272 - +0.6
49,272 - -0.4
49,272 - +0.2
49,272 - -0.1
49,336 + -1.6
49,473 + EX31_RS00240 0.16 -1.4
49,473 + EX31_RS00240 0.16 -0.1
49,473 + EX31_RS00240 0.16 -0.7
49,474 - EX31_RS00240 0.16 -0.5
49,474 - EX31_RS00240 0.16 -1.0
49,474 - EX31_RS00240 0.16 +0.8
49,485 + EX31_RS00240 0.17 +0.8
49,581 + EX31_RS00240 0.27 -1.1
49,581 + EX31_RS00240 0.27 -0.1
49,581 + EX31_RS00240 0.27 +0.8
49,582 - EX31_RS00240 0.27 +1.4
49,582 - EX31_RS00240 0.27 +0.2
49,582 - EX31_RS00240 0.27 -0.1
49,582 - EX31_RS00240 0.27 +0.7
49,582 - EX31_RS00240 0.27 +0.4
49,582 - EX31_RS00240 0.27 +0.2
49,582 - EX31_RS00240 0.27 +1.2
49,582 - EX31_RS00240 0.27 +1.2
49,675 - EX31_RS00240 0.36 -0.2
49,839 - EX31_RS00240 0.53 +0.2
49,839 - EX31_RS00240 0.53 -0.6
49,927 + EX31_RS00240 0.62 +0.3
49,927 + EX31_RS00240 0.62 -1.2
49,928 - EX31_RS00240 0.62 -0.1
49,981 + EX31_RS00240 0.67 -1.4
49,982 - EX31_RS00240 0.67 +0.2
50,090 + EX31_RS00240 0.78 -0.7
50,091 - EX31_RS00240 0.78 -0.4
50,128 - EX31_RS00240 0.82 -0.1
50,128 - EX31_RS00240 0.82 -0.0
50,156 - EX31_RS00240 0.85 -0.5
50,201 - EX31_RS00240 0.89 +0.5

Or see this region's nucleotide sequence