Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20165 and EX31_RS20170 are separated by 223 nucleotides EX31_RS20170 and EX31_RS20175 are separated by 210 nucleotides
EX31_RS20165: EX31_RS20165 - cell division protein ZipA, at 661,204 to 662,202
_RS20165
EX31_RS20170: EX31_RS20170 - sulfate transporter CysZ, at 662,426 to 663,226
_RS20170
EX31_RS20175: EX31_RS20175 - cysteine synthase A, at 663,437 to 664,402
_RS20175
Position (kb) 662
663
664 Strain fitness (log2 ratio) -2
-1
0
1 at 662.221 kb on - strand at 662.224 kb on - strand at 662.224 kb on - strand at 662.224 kb on - strand at 662.224 kb on - strand at 662.224 kb on - strand at 662.256 kb on - strand at 662.256 kb on - strand at 662.256 kb on - strand at 662.256 kb on - strand at 662.256 kb on - strand at 662.274 kb on - strand at 662.274 kb on - strand at 662.274 kb on - strand at 662.278 kb on - strand at 662.278 kb on - strand at 662.278 kb on - strand at 662.278 kb on - strand at 662.278 kb on - strand at 662.278 kb on - strand at 662.309 kb on + strand at 662.309 kb on + strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.310 kb on - strand at 662.314 kb on - strand at 662.383 kb on + strand at 662.383 kb on + strand at 662.383 kb on + strand at 662.383 kb on + strand at 662.389 kb on - strand at 662.389 kb on - strand at 662.468 kb on + strand at 662.468 kb on + strand at 662.468 kb on + strand at 662.469 kb on - strand at 662.526 kb on + strand, within EX31_RS20170 at 662.645 kb on + strand, within EX31_RS20170 at 662.645 kb on + strand, within EX31_RS20170 at 662.646 kb on - strand, within EX31_RS20170 at 662.693 kb on + strand, within EX31_RS20170 at 662.693 kb on + strand, within EX31_RS20170 at 662.693 kb on + strand, within EX31_RS20170 at 662.693 kb on + strand, within EX31_RS20170 at 662.694 kb on - strand, within EX31_RS20170 at 662.694 kb on - strand, within EX31_RS20170 at 662.694 kb on - strand, within EX31_RS20170 at 662.694 kb on - strand, within EX31_RS20170 at 662.792 kb on - strand, within EX31_RS20170 at 662.821 kb on - strand, within EX31_RS20170 at 662.858 kb on + strand, within EX31_RS20170 at 662.859 kb on - strand, within EX31_RS20170 at 662.861 kb on + strand, within EX31_RS20170 at 662.861 kb on + strand, within EX31_RS20170 at 662.861 kb on + strand, within EX31_RS20170 at 662.862 kb on - strand, within EX31_RS20170 at 662.862 kb on - strand, within EX31_RS20170 at 662.895 kb on - strand, within EX31_RS20170 at 662.895 kb on - strand, within EX31_RS20170 at 662.895 kb on - strand, within EX31_RS20170 at 662.899 kb on + strand, within EX31_RS20170 at 662.972 kb on + strand, within EX31_RS20170 at 663.083 kb on - strand, within EX31_RS20170 at 663.166 kb on + strand at 663.166 kb on + strand at 663.166 kb on + strand at 663.171 kb on - strand at 663.171 kb on - strand at 663.171 kb on - strand at 663.176 kb on - strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.188 kb on + strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.189 kb on - strand at 663.190 kb on + strand at 663.190 kb on + strand at 663.190 kb on + strand at 663.191 kb on - strand at 663.191 kb on - strand at 663.196 kb on + strand at 663.196 kb on + strand at 663.196 kb on + strand at 663.196 kb on + strand at 663.196 kb on + strand at 663.196 kb on + strand at 663.197 kb on - strand at 663.197 kb on - strand at 663.197 kb on - strand at 663.197 kb on - strand at 663.197 kb on - strand at 663.197 kb on - strand at 663.199 kb on + strand at 663.199 kb on + strand at 663.199 kb on + strand at 663.200 kb on - strand at 663.234 kb on + strand at 663.265 kb on + strand at 663.265 kb on + strand at 663.265 kb on + strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.291 kb on + strand at 663.291 kb on + strand at 663.291 kb on + strand at 663.292 kb on - strand at 663.292 kb on - strand at 663.298 kb on + strand at 663.298 kb on + strand at 663.301 kb on + strand at 663.301 kb on + strand at 663.302 kb on - strand at 663.302 kb on - strand at 663.302 kb on - strand at 663.313 kb on - strand at 663.313 kb on - strand at 663.313 kb on - strand at 663.314 kb on + strand at 663.314 kb on + strand at 663.314 kb on + strand at 663.314 kb on + strand at 663.314 kb on + strand at 663.315 kb on - strand at 663.315 kb on - strand at 663.315 kb on - strand at 663.315 kb on - strand at 663.315 kb on - strand at 663.321 kb on + strand at 663.322 kb on - strand at 663.332 kb on + strand at 663.333 kb on - strand at 663.333 kb on - strand at 663.357 kb on + strand at 663.418 kb on + strand at 663.418 kb on + strand at 663.418 kb on + strand at 663.419 kb on - strand at 663.424 kb on + strand at 663.424 kb on + strand at 663.424 kb on + strand at 663.425 kb on - strand at 663.437 kb on - strand at 663.437 kb on - strand at 663.449 kb on + strand at 663.449 kb on + strand at 663.449 kb on + strand at 663.450 kb on - strand at 663.450 kb on - strand at 663.450 kb on - strand at 663.450 kb on - strand at 663.450 kb on - strand at 663.541 kb on + strand, within EX31_RS20175 at 663.541 kb on + strand, within EX31_RS20175 at 663.542 kb on - strand, within EX31_RS20175 at 663.622 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.640 kb on + strand, within EX31_RS20175 at 663.671 kb on + strand, within EX31_RS20175 at 663.671 kb on + strand, within EX31_RS20175 at 663.671 kb on + strand, within EX31_RS20175 at 663.672 kb on - strand, within EX31_RS20175 at 663.672 kb on - strand, within EX31_RS20175 at 663.710 kb on - strand, within EX31_RS20175 at 663.710 kb on - strand, within EX31_RS20175 at 663.710 kb on - strand, within EX31_RS20175 at 663.739 kb on + strand, within EX31_RS20175 at 663.739 kb on + strand, within EX31_RS20175 at 663.848 kb on + strand, within EX31_RS20175 at 663.848 kb on + strand, within EX31_RS20175 at 663.853 kb on + strand, within EX31_RS20175 at 663.853 kb on + strand, within EX31_RS20175 at 663.854 kb on - strand, within EX31_RS20175 at 663.854 kb on - strand, within EX31_RS20175 at 663.928 kb on + strand, within EX31_RS20175 at 663.928 kb on + strand, within EX31_RS20175 at 663.980 kb on - strand, within EX31_RS20175 at 663.980 kb on - strand, within EX31_RS20175 at 664.106 kb on - strand, within EX31_RS20175 at 664.132 kb on + strand, within EX31_RS20175 at 664.176 kb on + strand, within EX31_RS20175
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 662,221 - -1.1 662,224 - +0.2 662,224 - +1.1 662,224 - -1.9 662,224 - +0.0 662,224 - -0.1 662,256 - +0.2 662,256 - -0.4 662,256 - +0.8 662,256 - +0.4 662,256 - +0.2 662,274 - -0.4 662,274 - +1.0 662,274 - +1.3 662,278 - -2.2 662,278 - +0.2 662,278 - -0.4 662,278 - -0.5 662,278 - -0.5 662,278 - +0.3 662,309 + +0.2 662,309 + +0.5 662,310 - +0.5 662,310 - -0.7 662,310 - +0.4 662,310 - +0.1 662,310 - +0.4 662,310 - -0.1 662,310 - +0.8 662,310 - +0.3 662,310 - -1.7 662,310 - +0.1 662,314 - -1.2 662,383 + +0.6 662,383 + -0.6 662,383 + +0.5 662,383 + -1.2 662,389 - -0.1 662,389 - +0.6 662,468 + -1.8 662,468 + -1.5 662,468 + -0.0 662,469 - -0.3 662,526 + EX31_RS20170 0.12 -1.5 662,645 + EX31_RS20170 0.27 +0.2 662,645 + EX31_RS20170 0.27 -0.1 662,646 - EX31_RS20170 0.27 -0.7 662,693 + EX31_RS20170 0.33 +0.5 662,693 + EX31_RS20170 0.33 +0.5 662,693 + EX31_RS20170 0.33 -0.3 662,693 + EX31_RS20170 0.33 +0.1 662,694 - EX31_RS20170 0.33 +0.3 662,694 - EX31_RS20170 0.33 -0.8 662,694 - EX31_RS20170 0.33 -0.5 662,694 - EX31_RS20170 0.33 +0.7 662,792 - EX31_RS20170 0.46 -0.4 662,821 - EX31_RS20170 0.49 +0.4 662,858 + EX31_RS20170 0.54 -0.8 662,859 - EX31_RS20170 0.54 +0.2 662,861 + EX31_RS20170 0.54 -1.0 662,861 + EX31_RS20170 0.54 -0.1 662,861 + EX31_RS20170 0.54 +0.5 662,862 - EX31_RS20170 0.54 -0.5 662,862 - EX31_RS20170 0.54 +0.0 662,895 - EX31_RS20170 0.59 -1.3 662,895 - EX31_RS20170 0.59 -0.4 662,895 - EX31_RS20170 0.59 -0.4 662,899 + EX31_RS20170 0.59 -0.4 662,972 + EX31_RS20170 0.68 -1.3 663,083 - EX31_RS20170 0.82 -1.1 663,166 + +0.8 663,166 + +0.7 663,166 + -0.4 663,171 - +1.1 663,171 - -0.3 663,171 - -0.6 663,176 - +0.5 663,188 + +0.4 663,188 + +0.7 663,188 + -0.4 663,188 + -0.2 663,188 + -0.7 663,188 + +0.9 663,188 + +0.4 663,189 - -1.0 663,189 - -2.4 663,189 - +0.5 663,189 - +0.1 663,189 - -0.4 663,189 - -0.8 663,189 - +0.1 663,190 + +0.3 663,190 + +0.0 663,190 + +0.2 663,191 - -0.2 663,191 - -0.8 663,196 + +0.6 663,196 + -0.8 663,196 + +0.0 663,196 + +0.4 663,196 + -0.4 663,196 + -0.2 663,197 - -0.3 663,197 - +0.2 663,197 - +0.0 663,197 - +0.5 663,197 - -0.6 663,197 - -0.4 663,199 + -0.4 663,199 + -0.3 663,199 + +0.6 663,200 - -0.5 663,234 + +0.6 663,265 + +0.1 663,265 + +0.3 663,265 + +0.9 663,266 - -0.0 663,266 - +0.6 663,266 - +0.6 663,266 - -0.3 663,266 - -0.5 663,266 - -0.5 663,266 - -1.3 663,266 - +0.5 663,291 + -0.5 663,291 + +0.3 663,291 + -1.2 663,292 - +0.1 663,292 - +0.1 663,298 + +0.2 663,298 + -0.6 663,301 + +0.2 663,301 + +0.1 663,302 - -1.6 663,302 - -1.9 663,302 - -1.5 663,313 - -1.4 663,313 - -0.5 663,313 - -0.8 663,314 + -0.2 663,314 + -0.8 663,314 + +0.3 663,314 + +0.9 663,314 + -0.7 663,315 - -2.0 663,315 - -1.5 663,315 - -2.5 663,315 - -2.2 663,315 - -0.4 663,321 + +0.5 663,322 - -2.7 663,332 + +0.3 663,333 - -0.9 663,333 - -1.0 663,357 + +0.4 663,418 + +0.5 663,418 + -0.2 663,418 + -1.1 663,419 - -1.3 663,424 + +0.7 663,424 + -0.4 663,424 + +0.1 663,425 - -1.9 663,437 - -0.6 663,437 - -0.5 663,449 + -1.4 663,449 + -0.8 663,449 + -0.6 663,450 - -1.8 663,450 - -1.4 663,450 - -1.9 663,450 - -1.5 663,450 - -0.9 663,541 + EX31_RS20175 0.11 -1.9 663,541 + EX31_RS20175 0.11 -2.5 663,542 - EX31_RS20175 0.11 +0.1 663,622 + EX31_RS20175 0.19 -2.4 663,640 + EX31_RS20175 0.21 -2.0 663,640 + EX31_RS20175 0.21 -1.4 663,640 + EX31_RS20175 0.21 -1.6 663,640 + EX31_RS20175 0.21 -1.7 663,640 + EX31_RS20175 0.21 -1.4 663,640 + EX31_RS20175 0.21 -1.7 663,671 + EX31_RS20175 0.24 -0.4 663,671 + EX31_RS20175 0.24 +0.1 663,671 + EX31_RS20175 0.24 -1.4 663,672 - EX31_RS20175 0.24 -0.2 663,672 - EX31_RS20175 0.24 -2.7 663,710 - EX31_RS20175 0.28 -1.8 663,710 - EX31_RS20175 0.28 -0.5 663,710 - EX31_RS20175 0.28 -0.8 663,739 + EX31_RS20175 0.31 -0.4 663,739 + EX31_RS20175 0.31 -0.6 663,848 + EX31_RS20175 0.43 -1.4 663,848 + EX31_RS20175 0.43 -1.5 663,853 + EX31_RS20175 0.43 -1.2 663,853 + EX31_RS20175 0.43 -1.5 663,854 - EX31_RS20175 0.43 -1.0 663,854 - EX31_RS20175 0.43 -1.6 663,928 + EX31_RS20175 0.51 -1.2 663,928 + EX31_RS20175 0.51 -2.1 663,980 - EX31_RS20175 0.56 -1.6 663,980 - EX31_RS20175 0.56 -1.4 664,106 - EX31_RS20175 0.69 -1.3 664,132 + EX31_RS20175 0.72 -0.9 664,176 + EX31_RS20175 0.77 -1.9
Or see this region's nucleotide sequence