Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02780 and EX31_RS02785 are separated by 103 nucleotides EX31_RS02785 and EX31_RS02790 overlap by 4 nucleotides EX31_RS02790 and EX31_RS02795 are separated by 6 nucleotides
EX31_RS02780: EX31_RS02780 - oligosaccharide flippase family protein, at 25,691 to 26,908
_RS02780
EX31_RS02785: EX31_RS02785 - polysaccharide biosynthesis tyrosine autokinase, at 27,012 to 29,162
_RS02785
EX31_RS02790: EX31_RS02790 - low molecular weight phosphotyrosine protein phosphatase, at 29,159 to 29,608
_RS02790
EX31_RS02795: EX31_RS02795 - polysaccharide export protein, at 29,615 to 30,745
_RS02795
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 26.264 kb on - strand, within EX31_RS02780 at 26.264 kb on - strand, within EX31_RS02780 at 26.377 kb on + strand, within EX31_RS02780 at 26.378 kb on - strand, within EX31_RS02780 at 26.557 kb on + strand, within EX31_RS02780 at 26.654 kb on + strand, within EX31_RS02780 at 26.654 kb on + strand, within EX31_RS02780 at 26.657 kb on - strand, within EX31_RS02780 at 26.716 kb on + strand, within EX31_RS02780 at 26.811 kb on - strand at 26.878 kb on - strand at 26.878 kb on - strand at 26.878 kb on - strand at 26.881 kb on + strand at 26.884 kb on + strand at 27.081 kb on - strand at 27.120 kb on - strand at 27.133 kb on - strand at 27.198 kb on - strand at 27.198 kb on - strand at 27.205 kb on + strand at 27.206 kb on - strand at 27.209 kb on + strand at 27.209 kb on + strand at 27.213 kb on + strand at 27.259 kb on - strand, within EX31_RS02785 at 27.359 kb on + strand, within EX31_RS02785 at 27.380 kb on + strand, within EX31_RS02785 at 27.384 kb on - strand, within EX31_RS02785 at 27.446 kb on + strand, within EX31_RS02785 at 27.447 kb on - strand, within EX31_RS02785 at 27.447 kb on - strand, within EX31_RS02785 at 27.495 kb on - strand, within EX31_RS02785 at 27.495 kb on - strand, within EX31_RS02785 at 27.495 kb on - strand, within EX31_RS02785 at 27.496 kb on + strand, within EX31_RS02785 at 27.496 kb on + strand, within EX31_RS02785 at 27.496 kb on + strand, within EX31_RS02785 at 27.496 kb on + strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.497 kb on - strand, within EX31_RS02785 at 27.498 kb on + strand, within EX31_RS02785 at 27.498 kb on + strand, within EX31_RS02785 at 27.498 kb on + strand, within EX31_RS02785 at 27.498 kb on + strand, within EX31_RS02785 at 27.498 kb on + strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.499 kb on - strand, within EX31_RS02785 at 27.562 kb on - strand, within EX31_RS02785 at 27.654 kb on + strand, within EX31_RS02785 at 27.655 kb on - strand, within EX31_RS02785 at 27.685 kb on - strand, within EX31_RS02785 at 27.693 kb on - strand, within EX31_RS02785 at 27.693 kb on - strand, within EX31_RS02785 at 27.705 kb on - strand, within EX31_RS02785 at 27.713 kb on + strand, within EX31_RS02785 at 27.714 kb on - strand, within EX31_RS02785 at 27.714 kb on - strand, within EX31_RS02785 at 27.725 kb on - strand, within EX31_RS02785 at 27.725 kb on - strand, within EX31_RS02785 at 27.725 kb on - strand, within EX31_RS02785 at 27.770 kb on + strand, within EX31_RS02785 at 27.771 kb on - strand, within EX31_RS02785 at 27.771 kb on - strand, within EX31_RS02785 at 27.771 kb on - strand, within EX31_RS02785 at 27.790 kb on - strand, within EX31_RS02785 at 27.790 kb on - strand, within EX31_RS02785 at 27.835 kb on - strand, within EX31_RS02785 at 27.837 kb on - strand, within EX31_RS02785 at 27.957 kb on - strand, within EX31_RS02785 at 27.975 kb on - strand, within EX31_RS02785 at 28.005 kb on - strand, within EX31_RS02785 at 28.006 kb on + strand, within EX31_RS02785 at 28.007 kb on - strand, within EX31_RS02785 at 28.007 kb on - strand, within EX31_RS02785 at 28.137 kb on + strand, within EX31_RS02785 at 28.138 kb on - strand, within EX31_RS02785 at 28.160 kb on + strand, within EX31_RS02785 at 28.163 kb on - strand, within EX31_RS02785 at 28.202 kb on + strand, within EX31_RS02785 at 28.392 kb on - strand, within EX31_RS02785 at 28.416 kb on - strand, within EX31_RS02785 at 28.463 kb on - strand, within EX31_RS02785 at 28.466 kb on + strand, within EX31_RS02785 at 28.467 kb on - strand, within EX31_RS02785 at 28.568 kb on + strand, within EX31_RS02785 at 28.577 kb on + strand, within EX31_RS02785 at 28.587 kb on + strand, within EX31_RS02785 at 28.588 kb on - strand, within EX31_RS02785 at 28.588 kb on - strand, within EX31_RS02785 at 28.626 kb on + strand, within EX31_RS02785 at 28.652 kb on + strand, within EX31_RS02785 at 28.653 kb on - strand, within EX31_RS02785 at 28.653 kb on - strand, within EX31_RS02785 at 28.653 kb on - strand, within EX31_RS02785 at 28.653 kb on - strand, within EX31_RS02785 at 28.653 kb on - strand, within EX31_RS02785 at 28.672 kb on - strand, within EX31_RS02785 at 28.706 kb on + strand, within EX31_RS02785 at 28.707 kb on - strand, within EX31_RS02785 at 28.708 kb on + strand, within EX31_RS02785 at 28.708 kb on + strand, within EX31_RS02785 at 28.708 kb on + strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.709 kb on - strand, within EX31_RS02785 at 28.746 kb on - strand, within EX31_RS02785 at 28.788 kb on + strand, within EX31_RS02785 at 28.789 kb on - strand, within EX31_RS02785 at 28.818 kb on - strand, within EX31_RS02785 at 28.847 kb on + strand, within EX31_RS02785 at 28.881 kb on - strand, within EX31_RS02785 at 28.937 kb on + strand, within EX31_RS02785 at 28.938 kb on - strand, within EX31_RS02785 at 28.980 kb on + strand at 28.981 kb on - strand at 29.023 kb on - strand at 29.023 kb on - strand at 29.051 kb on + strand at 29.051 kb on + strand at 29.226 kb on - strand, within EX31_RS02790 at 29.228 kb on - strand, within EX31_RS02790 at 29.245 kb on + strand, within EX31_RS02790 at 29.302 kb on + strand, within EX31_RS02790 at 29.348 kb on - strand, within EX31_RS02790 at 29.348 kb on - strand, within EX31_RS02790 at 29.510 kb on + strand, within EX31_RS02790 at 29.567 kb on + strand at 29.567 kb on + strand at 29.567 kb on + strand at 29.567 kb on + strand at 29.568 kb on - strand at 29.569 kb on + strand at 29.570 kb on - strand at 29.570 kb on - strand at 29.570 kb on - strand at 29.570 kb on - strand at 29.570 kb on - strand at 29.570 kb on - strand at 29.599 kb on + strand at 29.599 kb on + strand at 29.600 kb on - strand at 29.604 kb on - strand at 29.728 kb on - strand, within EX31_RS02795 at 29.735 kb on - strand, within EX31_RS02795 at 29.802 kb on + strand, within EX31_RS02795 at 29.803 kb on - strand, within EX31_RS02795 at 29.825 kb on - strand, within EX31_RS02795 at 29.855 kb on + strand, within EX31_RS02795 at 29.855 kb on + strand, within EX31_RS02795 at 29.856 kb on - strand, within EX31_RS02795 at 29.900 kb on - strand, within EX31_RS02795 at 29.900 kb on - strand, within EX31_RS02795 at 29.943 kb on - strand, within EX31_RS02795 at 29.943 kb on - strand, within EX31_RS02795 at 30.007 kb on - strand, within EX31_RS02795 at 30.013 kb on + strand, within EX31_RS02795 at 30.014 kb on - strand, within EX31_RS02795 at 30.046 kb on + strand, within EX31_RS02795 at 30.046 kb on + strand, within EX31_RS02795 at 30.047 kb on - strand, within EX31_RS02795 at 30.063 kb on - strand, within EX31_RS02795 at 30.098 kb on - strand, within EX31_RS02795 at 30.138 kb on - strand, within EX31_RS02795 at 30.154 kb on + strand, within EX31_RS02795 at 30.155 kb on - strand, within EX31_RS02795
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 26,264 - EX31_RS02780 0.47 +0.4 26,264 - EX31_RS02780 0.47 -0.9 26,377 + EX31_RS02780 0.56 +0.2 26,378 - EX31_RS02780 0.56 +0.1 26,557 + EX31_RS02780 0.71 +0.7 26,654 + EX31_RS02780 0.79 -0.5 26,654 + EX31_RS02780 0.79 +0.2 26,657 - EX31_RS02780 0.79 +0.2 26,716 + EX31_RS02780 0.84 -0.3 26,811 - +0.1 26,878 - -0.2 26,878 - -0.3 26,878 - +1.1 26,881 + -1.6 26,884 + -1.1 27,081 - +0.2 27,120 - -1.7 27,133 - -0.0 27,198 - -1.0 27,198 - -0.4 27,205 + -0.6 27,206 - -0.6 27,209 + -1.0 27,209 + +0.8 27,213 + -0.3 27,259 - EX31_RS02785 0.11 -2.7 27,359 + EX31_RS02785 0.16 +0.7 27,380 + EX31_RS02785 0.17 -0.3 27,384 - EX31_RS02785 0.17 -1.0 27,446 + EX31_RS02785 0.20 -1.2 27,447 - EX31_RS02785 0.20 -0.5 27,447 - EX31_RS02785 0.20 +0.2 27,495 - EX31_RS02785 0.22 +0.4 27,495 - EX31_RS02785 0.22 -0.2 27,495 - EX31_RS02785 0.22 +0.1 27,496 + EX31_RS02785 0.23 -0.4 27,496 + EX31_RS02785 0.23 +0.4 27,496 + EX31_RS02785 0.23 +0.2 27,496 + EX31_RS02785 0.23 +1.0 27,497 - EX31_RS02785 0.23 -0.5 27,497 - EX31_RS02785 0.23 -1.7 27,497 - EX31_RS02785 0.23 -1.9 27,497 - EX31_RS02785 0.23 +0.3 27,497 - EX31_RS02785 0.23 +0.9 27,497 - EX31_RS02785 0.23 -1.1 27,497 - EX31_RS02785 0.23 +0.9 27,497 - EX31_RS02785 0.23 +0.4 27,498 + EX31_RS02785 0.23 -0.7 27,498 + EX31_RS02785 0.23 -0.7 27,498 + EX31_RS02785 0.23 -0.8 27,498 + EX31_RS02785 0.23 -1.3 27,498 + EX31_RS02785 0.23 -0.2 27,499 - EX31_RS02785 0.23 -0.4 27,499 - EX31_RS02785 0.23 -1.1 27,499 - EX31_RS02785 0.23 +0.6 27,499 - EX31_RS02785 0.23 -0.7 27,499 - EX31_RS02785 0.23 -0.4 27,499 - EX31_RS02785 0.23 +0.2 27,499 - EX31_RS02785 0.23 -0.1 27,562 - EX31_RS02785 0.26 -1.0 27,654 + EX31_RS02785 0.30 +0.3 27,655 - EX31_RS02785 0.30 +0.5 27,685 - EX31_RS02785 0.31 +0.0 27,693 - EX31_RS02785 0.32 +0.1 27,693 - EX31_RS02785 0.32 +0.5 27,705 - EX31_RS02785 0.32 +0.0 27,713 + EX31_RS02785 0.33 +0.2 27,714 - EX31_RS02785 0.33 +0.5 27,714 - EX31_RS02785 0.33 +0.4 27,725 - EX31_RS02785 0.33 +0.1 27,725 - EX31_RS02785 0.33 +0.2 27,725 - EX31_RS02785 0.33 +0.1 27,770 + EX31_RS02785 0.35 -0.4 27,771 - EX31_RS02785 0.35 +0.3 27,771 - EX31_RS02785 0.35 +0.1 27,771 - EX31_RS02785 0.35 -0.5 27,790 - EX31_RS02785 0.36 +0.9 27,790 - EX31_RS02785 0.36 +0.3 27,835 - EX31_RS02785 0.38 +0.5 27,837 - EX31_RS02785 0.38 +0.0 27,957 - EX31_RS02785 0.44 -0.1 27,975 - EX31_RS02785 0.45 -1.1 28,005 - EX31_RS02785 0.46 +0.1 28,006 + EX31_RS02785 0.46 -0.7 28,007 - EX31_RS02785 0.46 -0.4 28,007 - EX31_RS02785 0.46 +0.7 28,137 + EX31_RS02785 0.52 -0.6 28,138 - EX31_RS02785 0.52 -2.3 28,160 + EX31_RS02785 0.53 +1.0 28,163 - EX31_RS02785 0.54 -0.3 28,202 + EX31_RS02785 0.55 -1.2 28,392 - EX31_RS02785 0.64 -0.5 28,416 - EX31_RS02785 0.65 -0.4 28,463 - EX31_RS02785 0.67 -0.6 28,466 + EX31_RS02785 0.68 -0.5 28,467 - EX31_RS02785 0.68 +0.7 28,568 + EX31_RS02785 0.72 -0.6 28,577 + EX31_RS02785 0.73 +0.7 28,587 + EX31_RS02785 0.73 -0.3 28,588 - EX31_RS02785 0.73 -0.2 28,588 - EX31_RS02785 0.73 -0.3 28,626 + EX31_RS02785 0.75 +0.0 28,652 + EX31_RS02785 0.76 -0.6 28,653 - EX31_RS02785 0.76 -0.6 28,653 - EX31_RS02785 0.76 +0.1 28,653 - EX31_RS02785 0.76 -0.2 28,653 - EX31_RS02785 0.76 -0.1 28,653 - EX31_RS02785 0.76 -0.3 28,672 - EX31_RS02785 0.77 +1.5 28,706 + EX31_RS02785 0.79 -0.9 28,707 - EX31_RS02785 0.79 -0.9 28,708 + EX31_RS02785 0.79 -1.1 28,708 + EX31_RS02785 0.79 -0.4 28,708 + EX31_RS02785 0.79 +0.1 28,709 - EX31_RS02785 0.79 -0.3 28,709 - EX31_RS02785 0.79 -0.6 28,709 - EX31_RS02785 0.79 +0.7 28,709 - EX31_RS02785 0.79 -0.1 28,709 - EX31_RS02785 0.79 -0.2 28,709 - EX31_RS02785 0.79 +0.3 28,746 - EX31_RS02785 0.81 -0.6 28,788 + EX31_RS02785 0.83 -0.6 28,789 - EX31_RS02785 0.83 +0.4 28,818 - EX31_RS02785 0.84 +0.3 28,847 + EX31_RS02785 0.85 -2.4 28,881 - EX31_RS02785 0.87 -0.8 28,937 + EX31_RS02785 0.89 +0.1 28,938 - EX31_RS02785 0.90 -0.5 28,980 + -0.8 28,981 - -0.3 29,023 - -1.0 29,023 - -0.3 29,051 + +0.3 29,051 + -0.6 29,226 - EX31_RS02790 0.15 +0.7 29,228 - EX31_RS02790 0.15 -0.7 29,245 + EX31_RS02790 0.19 -0.5 29,302 + EX31_RS02790 0.32 -0.6 29,348 - EX31_RS02790 0.42 -3.3 29,348 - EX31_RS02790 0.42 -0.2 29,510 + EX31_RS02790 0.78 -1.0 29,567 + -0.2 29,567 + +0.8 29,567 + -0.2 29,567 + +0.3 29,568 - +0.1 29,569 + +0.6 29,570 - +0.4 29,570 - +0.3 29,570 - +0.1 29,570 - -1.4 29,570 - -0.3 29,570 - +0.4 29,599 + +0.6 29,599 + -0.6 29,600 - -0.7 29,604 - +0.7 29,728 - EX31_RS02795 0.10 -1.3 29,735 - EX31_RS02795 0.11 -0.0 29,802 + EX31_RS02795 0.17 -0.5 29,803 - EX31_RS02795 0.17 -0.9 29,825 - EX31_RS02795 0.19 -1.3 29,855 + EX31_RS02795 0.21 +0.4 29,855 + EX31_RS02795 0.21 -0.7 29,856 - EX31_RS02795 0.21 -0.8 29,900 - EX31_RS02795 0.25 +0.6 29,900 - EX31_RS02795 0.25 -1.2 29,943 - EX31_RS02795 0.29 -0.0 29,943 - EX31_RS02795 0.29 +1.1 30,007 - EX31_RS02795 0.35 +0.8 30,013 + EX31_RS02795 0.35 +0.8 30,014 - EX31_RS02795 0.35 -0.3 30,046 + EX31_RS02795 0.38 -0.2 30,046 + EX31_RS02795 0.38 +0.4 30,047 - EX31_RS02795 0.38 -1.2 30,063 - EX31_RS02795 0.40 -0.2 30,098 - EX31_RS02795 0.43 -0.8 30,138 - EX31_RS02795 0.46 -0.7 30,154 + EX31_RS02795 0.48 -0.1 30,155 - EX31_RS02795 0.48 +0.2
Or see this region's nucleotide sequence