Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22310 and EX31_RS22315 are separated by 341 nucleotides EX31_RS22315 and EX31_RS22320 are separated by 85 nucleotides EX31_RS22320 and EX31_RS22325 are separated by 140 nucleotides
EX31_RS22310: EX31_RS22310 - SmdB family multidrug efflux ABC transporter permease/ATP-binding protein, at 214,526 to 216,355
_RS22310
EX31_RS22315: EX31_RS22315 - P-II family nitrogen regulator, at 216,697 to 217,035
_RS22315
EX31_RS22320: EX31_RS22320 - ammonium transporter AmtB, at 217,121 to 218,410
_RS22320
EX31_RS22325: EX31_RS22325 - acyl-CoA thioesterase II, at 218,551 to 219,417
_RS22325
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1 at 216.148 kb on + strand, within EX31_RS22310 at 216.148 kb on + strand, within EX31_RS22310 at 216.148 kb on + strand, within EX31_RS22310 at 216.200 kb on - strand at 216.275 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.284 kb on + strand at 216.285 kb on - strand at 216.331 kb on + strand at 216.332 kb on - strand at 216.354 kb on - strand at 216.440 kb on + strand at 216.440 kb on + strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.441 kb on - strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.500 kb on + strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.501 kb on - strand at 216.528 kb on + strand at 216.529 kb on - strand at 216.577 kb on - strand at 216.577 kb on - strand at 216.729 kb on + strand at 216.795 kb on + strand, within EX31_RS22315 at 216.833 kb on - strand, within EX31_RS22315 at 216.847 kb on + strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.848 kb on - strand, within EX31_RS22315 at 216.889 kb on - strand, within EX31_RS22315 at 216.940 kb on + strand, within EX31_RS22315 at 216.941 kb on - strand, within EX31_RS22315 at 216.949 kb on - strand, within EX31_RS22315 at 217.047 kb on + strand at 217.048 kb on - strand at 217.048 kb on - strand at 217.056 kb on + strand at 217.056 kb on + strand at 217.056 kb on + strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.057 kb on - strand at 217.134 kb on + strand at 217.226 kb on - strand at 217.226 kb on - strand at 217.283 kb on + strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.294 kb on - strand, within EX31_RS22320 at 217.373 kb on + strand, within EX31_RS22320 at 217.379 kb on + strand, within EX31_RS22320 at 217.380 kb on - strand, within EX31_RS22320 at 217.516 kb on + strand, within EX31_RS22320 at 217.517 kb on - strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.557 kb on + strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.558 kb on - strand, within EX31_RS22320 at 217.607 kb on + strand, within EX31_RS22320 at 217.607 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.727 kb on + strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.728 kb on - strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.814 kb on + strand, within EX31_RS22320 at 217.815 kb on - strand, within EX31_RS22320 at 217.815 kb on - strand, within EX31_RS22320 at 218.021 kb on - strand, within EX31_RS22320 at 218.021 kb on - strand, within EX31_RS22320 at 218.059 kb on - strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.160 kb on + strand, within EX31_RS22320 at 218.161 kb on - strand, within EX31_RS22320 at 218.161 kb on - strand, within EX31_RS22320 at 218.181 kb on + strand, within EX31_RS22320 at 218.209 kb on - strand, within EX31_RS22320 at 218.213 kb on + strand, within EX31_RS22320 at 218.214 kb on - strand, within EX31_RS22320 at 218.331 kb on + strand at 218.331 kb on + strand at 218.331 kb on + strand at 218.332 kb on - strand at 218.332 kb on - strand at 218.378 kb on - strand at 218.380 kb on + strand at 218.381 kb on - strand at 218.399 kb on + strand at 218.456 kb on + strand at 218.480 kb on - strand at 218.515 kb on - strand at 218.552 kb on + strand at 218.552 kb on + strand at 218.553 kb on - strand at 218.621 kb on + strand at 218.621 kb on + strand at 218.622 kb on - strand at 218.622 kb on - strand at 218.622 kb on - strand at 218.664 kb on + strand, within EX31_RS22325 at 218.665 kb on - strand, within EX31_RS22325 at 218.678 kb on + strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.679 kb on - strand, within EX31_RS22325 at 218.817 kb on - strand, within EX31_RS22325 at 218.817 kb on - strand, within EX31_RS22325 at 218.825 kb on - strand, within EX31_RS22325 at 218.829 kb on - strand, within EX31_RS22325 at 218.947 kb on - strand, within EX31_RS22325 at 218.952 kb on + strand, within EX31_RS22325 at 218.952 kb on + strand, within EX31_RS22325 at 218.952 kb on + strand, within EX31_RS22325 at 218.952 kb on + strand, within EX31_RS22325 at 218.953 kb on - strand, within EX31_RS22325 at 218.953 kb on - strand, within EX31_RS22325 at 218.953 kb on - strand, within EX31_RS22325 at 218.953 kb on - strand, within EX31_RS22325 at 219.026 kb on - strand, within EX31_RS22325 at 219.026 kb on - strand, within EX31_RS22325 at 219.108 kb on + strand, within EX31_RS22325 at 219.109 kb on - strand, within EX31_RS22325 at 219.111 kb on - strand, within EX31_RS22325 at 219.166 kb on - strand, within EX31_RS22325 at 219.191 kb on + strand, within EX31_RS22325 at 219.191 kb on + strand, within EX31_RS22325 at 219.191 kb on + strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.192 kb on - strand, within EX31_RS22325 at 219.195 kb on + strand, within EX31_RS22325 at 219.196 kb on - strand, within EX31_RS22325 at 219.196 kb on - strand, within EX31_RS22325 at 219.250 kb on - strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.284 kb on + strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.285 kb on - strand, within EX31_RS22325 at 219.286 kb on + strand, within EX31_RS22325 at 219.286 kb on + strand, within EX31_RS22325 at 219.286 kb on + strand, within EX31_RS22325 at 219.286 kb on + strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.287 kb on - strand, within EX31_RS22325 at 219.326 kb on - strand, within EX31_RS22325 at 219.326 kb on - strand, within EX31_RS22325 at 219.326 kb on - strand, within EX31_RS22325
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 216,148 + EX31_RS22310 0.89 -0.1 216,148 + EX31_RS22310 0.89 +0.2 216,148 + EX31_RS22310 0.89 +0.1 216,200 - +0.7 216,275 + -0.5 216,284 + -0.2 216,284 + +0.1 216,284 + -0.9 216,284 + -0.4 216,284 + +0.1 216,284 + -0.2 216,285 - +0.2 216,331 + -0.4 216,332 - -1.0 216,354 - -1.0 216,440 + +1.1 216,440 + -0.1 216,441 - +0.6 216,441 - +0.4 216,441 - +1.0 216,441 - -0.2 216,441 - +1.6 216,441 - -1.9 216,500 + -1.6 216,500 + -2.1 216,500 + +0.3 216,500 + +0.3 216,501 - +0.5 216,501 - -0.2 216,501 - -0.5 216,501 - +0.4 216,528 + +0.6 216,529 - -0.4 216,577 - +0.2 216,577 - -0.5 216,729 + +0.5 216,795 + EX31_RS22315 0.29 -0.4 216,833 - EX31_RS22315 0.40 +0.1 216,847 + EX31_RS22315 0.44 +0.6 216,848 - EX31_RS22315 0.45 +0.5 216,848 - EX31_RS22315 0.45 -2.5 216,848 - EX31_RS22315 0.45 -0.6 216,889 - EX31_RS22315 0.57 -0.3 216,940 + EX31_RS22315 0.72 +0.0 216,941 - EX31_RS22315 0.72 +0.6 216,949 - EX31_RS22315 0.74 +0.3 217,047 + -0.1 217,048 - -2.4 217,048 - -1.2 217,056 + -0.8 217,056 + -1.0 217,056 + -1.8 217,057 - -1.2 217,057 - -0.6 217,057 - +0.3 217,057 - -1.6 217,134 + -1.2 217,226 - -0.5 217,226 - -1.4 217,283 + EX31_RS22320 0.13 -0.4 217,294 - EX31_RS22320 0.13 +0.1 217,294 - EX31_RS22320 0.13 -2.3 217,294 - EX31_RS22320 0.13 -0.4 217,373 + EX31_RS22320 0.20 -1.3 217,379 + EX31_RS22320 0.20 +0.5 217,380 - EX31_RS22320 0.20 -0.2 217,516 + EX31_RS22320 0.31 -0.1 217,517 - EX31_RS22320 0.31 -1.3 217,557 + EX31_RS22320 0.34 -1.1 217,557 + EX31_RS22320 0.34 -0.6 217,557 + EX31_RS22320 0.34 -0.6 217,557 + EX31_RS22320 0.34 +0.6 217,557 + EX31_RS22320 0.34 -0.5 217,558 - EX31_RS22320 0.34 -0.5 217,558 - EX31_RS22320 0.34 -1.6 217,558 - EX31_RS22320 0.34 -1.7 217,558 - EX31_RS22320 0.34 +1.0 217,558 - EX31_RS22320 0.34 -1.4 217,607 + EX31_RS22320 0.38 -0.5 217,607 + EX31_RS22320 0.38 -1.6 217,727 + EX31_RS22320 0.47 -0.9 217,727 + EX31_RS22320 0.47 -0.6 217,727 + EX31_RS22320 0.47 -1.8 217,728 - EX31_RS22320 0.47 -1.6 217,728 - EX31_RS22320 0.47 -0.5 217,728 - EX31_RS22320 0.47 -0.3 217,728 - EX31_RS22320 0.47 -1.3 217,814 + EX31_RS22320 0.54 -2.1 217,814 + EX31_RS22320 0.54 +0.9 217,814 + EX31_RS22320 0.54 -1.1 217,814 + EX31_RS22320 0.54 +0.1 217,814 + EX31_RS22320 0.54 +0.1 217,815 - EX31_RS22320 0.54 +0.2 217,815 - EX31_RS22320 0.54 +0.7 218,021 - EX31_RS22320 0.70 -1.8 218,021 - EX31_RS22320 0.70 -1.2 218,059 - EX31_RS22320 0.73 -1.6 218,160 + EX31_RS22320 0.81 -0.3 218,160 + EX31_RS22320 0.81 +0.7 218,160 + EX31_RS22320 0.81 -2.5 218,160 + EX31_RS22320 0.81 -1.1 218,160 + EX31_RS22320 0.81 -1.7 218,160 + EX31_RS22320 0.81 -1.1 218,160 + EX31_RS22320 0.81 -0.2 218,160 + EX31_RS22320 0.81 -2.2 218,160 + EX31_RS22320 0.81 -0.8 218,160 + EX31_RS22320 0.81 -0.6 218,161 - EX31_RS22320 0.81 -0.2 218,161 - EX31_RS22320 0.81 -0.4 218,181 + EX31_RS22320 0.82 +0.3 218,209 - EX31_RS22320 0.84 -0.6 218,213 + EX31_RS22320 0.85 -1.1 218,214 - EX31_RS22320 0.85 -2.7 218,331 + -0.2 218,331 + -0.4 218,331 + -1.2 218,332 - -0.4 218,332 - -0.5 218,378 - -0.6 218,380 + -1.8 218,381 - -1.2 218,399 + -1.0 218,456 + +0.3 218,480 - -0.2 218,515 - -0.2 218,552 + +0.8 218,552 + -1.3 218,553 - -0.3 218,621 + -0.6 218,621 + -0.1 218,622 - +0.7 218,622 - +0.2 218,622 - +0.4 218,664 + EX31_RS22325 0.13 -0.2 218,665 - EX31_RS22325 0.13 +0.7 218,678 + EX31_RS22325 0.15 +0.0 218,679 - EX31_RS22325 0.15 +0.2 218,679 - EX31_RS22325 0.15 -0.0 218,679 - EX31_RS22325 0.15 -0.1 218,679 - EX31_RS22325 0.15 +0.6 218,679 - EX31_RS22325 0.15 -0.5 218,679 - EX31_RS22325 0.15 -0.1 218,679 - EX31_RS22325 0.15 +0.2 218,817 - EX31_RS22325 0.31 +0.3 218,817 - EX31_RS22325 0.31 -0.1 218,825 - EX31_RS22325 0.32 -1.2 218,829 - EX31_RS22325 0.32 +0.1 218,947 - EX31_RS22325 0.46 +1.3 218,952 + EX31_RS22325 0.46 -0.5 218,952 + EX31_RS22325 0.46 -1.0 218,952 + EX31_RS22325 0.46 +0.2 218,952 + EX31_RS22325 0.46 -0.5 218,953 - EX31_RS22325 0.46 -0.9 218,953 - EX31_RS22325 0.46 -1.4 218,953 - EX31_RS22325 0.46 -1.4 218,953 - EX31_RS22325 0.46 +0.0 219,026 - EX31_RS22325 0.55 +0.1 219,026 - EX31_RS22325 0.55 +0.3 219,108 + EX31_RS22325 0.64 -0.1 219,109 - EX31_RS22325 0.64 -0.7 219,111 - EX31_RS22325 0.65 -0.9 219,166 - EX31_RS22325 0.71 -0.6 219,191 + EX31_RS22325 0.74 -0.5 219,191 + EX31_RS22325 0.74 -1.6 219,191 + EX31_RS22325 0.74 +0.7 219,192 - EX31_RS22325 0.74 +1.2 219,192 - EX31_RS22325 0.74 +0.5 219,192 - EX31_RS22325 0.74 +0.4 219,192 - EX31_RS22325 0.74 -0.9 219,192 - EX31_RS22325 0.74 -0.3 219,192 - EX31_RS22325 0.74 -0.3 219,195 + EX31_RS22325 0.74 +1.6 219,196 - EX31_RS22325 0.74 +0.0 219,196 - EX31_RS22325 0.74 -0.6 219,250 - EX31_RS22325 0.81 +0.2 219,284 + EX31_RS22325 0.85 -0.5 219,284 + EX31_RS22325 0.85 -0.6 219,284 + EX31_RS22325 0.85 -1.6 219,284 + EX31_RS22325 0.85 +0.5 219,284 + EX31_RS22325 0.85 -1.0 219,284 + EX31_RS22325 0.85 -0.6 219,285 - EX31_RS22325 0.85 -0.2 219,285 - EX31_RS22325 0.85 -0.4 219,285 - EX31_RS22325 0.85 +0.7 219,285 - EX31_RS22325 0.85 +0.2 219,285 - EX31_RS22325 0.85 -1.1 219,285 - EX31_RS22325 0.85 +0.0 219,286 + EX31_RS22325 0.85 -1.7 219,286 + EX31_RS22325 0.85 -1.8 219,286 + EX31_RS22325 0.85 -1.0 219,286 + EX31_RS22325 0.85 +0.1 219,287 - EX31_RS22325 0.85 -0.1 219,287 - EX31_RS22325 0.85 -1.0 219,287 - EX31_RS22325 0.85 -0.6 219,287 - EX31_RS22325 0.85 -1.4 219,287 - EX31_RS22325 0.85 +0.5 219,287 - EX31_RS22325 0.85 -0.1 219,287 - EX31_RS22325 0.85 +0.9 219,287 - EX31_RS22325 0.85 +0.1 219,287 - EX31_RS22325 0.85 -0.4 219,287 - EX31_RS22325 0.85 +0.7 219,287 - EX31_RS22325 0.85 +0.2 219,287 - EX31_RS22325 0.85 +0.1 219,287 - EX31_RS22325 0.85 -0.4 219,326 - EX31_RS22325 0.89 -0.2 219,326 - EX31_RS22325 0.89 +0.2 219,326 - EX31_RS22325 0.89 +0.1
Or see this region's nucleotide sequence