Strain Fitness in Rahnella sp. WP5 around EX31_RS08805

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS08795 and EX31_RS08800 are separated by 144 nucleotidesEX31_RS08800 and EX31_RS08805 are separated by 98 nucleotidesEX31_RS08805 and EX31_RS08810 are separated by 2 nucleotides EX31_RS08795: EX31_RS08795 - adenylosuccinate synthase, at 269,673 to 270,971 _RS08795 EX31_RS08800: EX31_RS08800 - DUF2065 domain-containing protein, at 271,116 to 271,316 _RS08800 EX31_RS08805: EX31_RS08805 - protease modulator HflC, at 271,415 to 272,413 _RS08805 EX31_RS08810: EX31_RS08810 - FtsH protease activity modulator HflK, at 272,416 to 273,714 _RS08810 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1at 271.038 kb on - strandat 271.063 kb on - strandat 271.144 kb on + strand, within EX31_RS08800at 271.144 kb on + strand, within EX31_RS08800at 271.144 kb on + strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.147 kb on + strand, within EX31_RS08800at 271.152 kb on + strand, within EX31_RS08800at 271.152 kb on + strand, within EX31_RS08800at 271.153 kb on - strand, within EX31_RS08800at 271.153 kb on - strand, within EX31_RS08800at 271.249 kb on + strand, within EX31_RS08800at 271.284 kb on + strand, within EX31_RS08800at 271.285 kb on - strand, within EX31_RS08800at 271.333 kb on + strandat 271.333 kb on + strandat 271.333 kb on + strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.417 kb on - strandat 271.441 kb on + strandat 271.441 kb on + strandat 271.469 kb on + strandat 271.496 kb on - strandat 271.496 kb on - strandat 271.536 kb on + strand, within EX31_RS08805at 271.536 kb on + strand, within EX31_RS08805at 271.537 kb on - strand, within EX31_RS08805at 271.537 kb on - strand, within EX31_RS08805at 271.618 kb on + strand, within EX31_RS08805at 271.618 kb on + strand, within EX31_RS08805at 271.619 kb on - strand, within EX31_RS08805at 271.619 kb on - strand, within EX31_RS08805at 271.691 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.746 kb on + strand, within EX31_RS08805at 271.793 kb on + strand, within EX31_RS08805at 271.793 kb on + strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 272.078 kb on + strand, within EX31_RS08805at 272.078 kb on + strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.106 kb on + strand, within EX31_RS08805at 272.107 kb on - strand, within EX31_RS08805at 272.126 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.251 kb on + strand, within EX31_RS08805at 272.271 kb on + strand, within EX31_RS08805at 272.272 kb on - strand, within EX31_RS08805at 272.285 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.309 kb on - strand, within EX31_RS08805at 272.364 kb on + strandat 272.365 kb on - strandat 272.365 kb on - strandat 272.365 kb on - strandat 272.365 kb on - strandat 272.397 kb on - strandat 272.407 kb on + strandat 272.407 kb on + strandat 272.407 kb on + strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.408 kb on - strandat 272.418 kb on - strandat 272.429 kb on - strandat 272.439 kb on + strandat 272.439 kb on + strandat 272.439 kb on + strandat 272.439 kb on + strandat 272.439 kb on + strandat 272.440 kb on - strandat 272.520 kb on + strandat 272.521 kb on - strandat 272.521 kb on - strandat 272.521 kb on - strandat 272.521 kb on - strandat 272.526 kb on + strandat 272.526 kb on + strandat 272.527 kb on - strandat 272.537 kb on - strandat 272.602 kb on - strand, within EX31_RS08810at 272.653 kb on - strand, within EX31_RS08810at 272.708 kb on + strand, within EX31_RS08810at 272.708 kb on + strand, within EX31_RS08810at 272.709 kb on - strand, within EX31_RS08810at 272.709 kb on - strand, within EX31_RS08810at 272.709 kb on - strand, within EX31_RS08810at 272.709 kb on - strand, within EX31_RS08810at 272.725 kb on - strand, within EX31_RS08810at 272.742 kb on + strand, within EX31_RS08810at 272.743 kb on - strand, within EX31_RS08810at 272.743 kb on - strand, within EX31_RS08810at 272.743 kb on - strand, within EX31_RS08810at 272.745 kb on - strand, within EX31_RS08810at 272.752 kb on + strand, within EX31_RS08810at 272.799 kb on + strand, within EX31_RS08810at 272.800 kb on - strand, within EX31_RS08810at 272.808 kb on + strand, within EX31_RS08810at 272.808 kb on + strand, within EX31_RS08810at 272.809 kb on - strand, within EX31_RS08810at 272.810 kb on + strand, within EX31_RS08810at 272.810 kb on + strand, within EX31_RS08810at 272.810 kb on + strand, within EX31_RS08810at 272.810 kb on + strand, within EX31_RS08810at 272.811 kb on - strand, within EX31_RS08810at 272.817 kb on + strand, within EX31_RS08810at 272.818 kb on - strand, within EX31_RS08810at 272.818 kb on - strand, within EX31_RS08810at 272.818 kb on - strand, within EX31_RS08810at 272.818 kb on - strand, within EX31_RS08810at 272.818 kb on - strand, within EX31_RS08810at 272.831 kb on - strand, within EX31_RS08810at 272.895 kb on + strand, within EX31_RS08810at 272.896 kb on - strand, within EX31_RS08810at 272.994 kb on + strand, within EX31_RS08810at 272.995 kb on - strand, within EX31_RS08810at 272.995 kb on - strand, within EX31_RS08810at 272.998 kb on - strand, within EX31_RS08810at 273.018 kb on + strand, within EX31_RS08810at 273.019 kb on - strand, within EX31_RS08810at 273.032 kb on - strand, within EX31_RS08810at 273.092 kb on + strand, within EX31_RS08810at 273.093 kb on - strand, within EX31_RS08810at 273.093 kb on - strand, within EX31_RS08810at 273.112 kb on + strand, within EX31_RS08810at 273.113 kb on - strand, within EX31_RS08810at 273.113 kb on - strand, within EX31_RS08810at 273.170 kb on + strand, within EX31_RS08810at 273.171 kb on - strand, within EX31_RS08810at 273.171 kb on - strand, within EX31_RS08810at 273.171 kb on - strand, within EX31_RS08810at 273.244 kb on + strand, within EX31_RS08810at 273.244 kb on + strand, within EX31_RS08810at 273.245 kb on - strand, within EX31_RS08810at 273.245 kb on - strand, within EX31_RS08810at 273.268 kb on + strand, within EX31_RS08810at 273.269 kb on - strand, within EX31_RS08810at 273.278 kb on - strand, within EX31_RS08810at 273.284 kb on - strand, within EX31_RS08810at 273.352 kb on - strand, within EX31_RS08810at 273.352 kb on - strand, within EX31_RS08810at 273.388 kb on - strand, within EX31_RS08810at 273.393 kb on + strand, within EX31_RS08810at 273.393 kb on + strand, within EX31_RS08810at 273.394 kb on - strand, within EX31_RS08810at 273.394 kb on - strand, within EX31_RS08810at 273.395 kb on + strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810at 273.396 kb on - strand, within EX31_RS08810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
271,038 - -0.9
271,063 - +0.3
271,144 + EX31_RS08800 0.14 -0.2
271,144 + EX31_RS08800 0.14 -0.4
271,144 + EX31_RS08800 0.14 -0.4
271,145 - EX31_RS08800 0.14 +1.1
271,145 - EX31_RS08800 0.14 +0.7
271,145 - EX31_RS08800 0.14 -0.0
271,147 + EX31_RS08800 0.15 +0.5
271,152 + EX31_RS08800 0.18 -0.2
271,152 + EX31_RS08800 0.18 +0.4
271,153 - EX31_RS08800 0.18 +0.4
271,153 - EX31_RS08800 0.18 +0.4
271,249 + EX31_RS08800 0.66 +1.1
271,284 + EX31_RS08800 0.84 +0.3
271,285 - EX31_RS08800 0.84 +0.5
271,333 + +0.8
271,333 + +0.4
271,333 + +0.6
271,334 - +0.6
271,334 - +0.4
271,334 - -0.4
271,334 - +0.3
271,417 - +0.1
271,441 + -0.2
271,441 + -0.6
271,469 + +0.5
271,496 - -0.0
271,496 - +0.3
271,536 + EX31_RS08805 0.12 -0.5
271,536 + EX31_RS08805 0.12 -0.5
271,537 - EX31_RS08805 0.12 -0.2
271,537 - EX31_RS08805 0.12 -0.8
271,618 + EX31_RS08805 0.20 +0.0
271,618 + EX31_RS08805 0.20 -0.2
271,619 - EX31_RS08805 0.20 -1.2
271,619 - EX31_RS08805 0.20 +1.0
271,691 - EX31_RS08805 0.28 -0.2
271,739 - EX31_RS08805 0.32 -0.7
271,739 - EX31_RS08805 0.32 -0.0
271,739 - EX31_RS08805 0.32 +0.0
271,739 - EX31_RS08805 0.32 -0.2
271,746 + EX31_RS08805 0.33 -0.7
271,793 + EX31_RS08805 0.38 +0.0
271,793 + EX31_RS08805 0.38 -2.5
271,794 - EX31_RS08805 0.38 +0.3
271,794 - EX31_RS08805 0.38 -1.3
271,794 - EX31_RS08805 0.38 -0.1
271,794 - EX31_RS08805 0.38 +0.1
271,794 - EX31_RS08805 0.38 +0.2
271,794 - EX31_RS08805 0.38 -0.0
271,794 - EX31_RS08805 0.38 -0.4
271,794 - EX31_RS08805 0.38 +0.6
271,794 - EX31_RS08805 0.38 +0.1
271,794 - EX31_RS08805 0.38 +0.3
271,794 - EX31_RS08805 0.38 -0.8
271,794 - EX31_RS08805 0.38 -0.1
272,078 + EX31_RS08805 0.66 +0.3
272,078 + EX31_RS08805 0.66 -0.4
272,079 - EX31_RS08805 0.66 +0.4
272,079 - EX31_RS08805 0.66 +0.3
272,079 - EX31_RS08805 0.66 -0.6
272,079 - EX31_RS08805 0.66 +0.4
272,079 - EX31_RS08805 0.66 -0.6
272,079 - EX31_RS08805 0.66 -0.7
272,079 - EX31_RS08805 0.66 +1.1
272,079 - EX31_RS08805 0.66 +1.1
272,079 - EX31_RS08805 0.66 -0.7
272,079 - EX31_RS08805 0.66 +0.9
272,104 - EX31_RS08805 0.69 -0.4
272,104 - EX31_RS08805 0.69 -0.7
272,104 - EX31_RS08805 0.69 +0.9
272,104 - EX31_RS08805 0.69 +0.8
272,106 + EX31_RS08805 0.69 -0.7
272,107 - EX31_RS08805 0.69 +0.3
272,126 - EX31_RS08805 0.71 +0.1
272,154 - EX31_RS08805 0.74 -0.4
272,154 - EX31_RS08805 0.74 +0.2
272,154 - EX31_RS08805 0.74 +0.5
272,154 - EX31_RS08805 0.74 -0.0
272,154 - EX31_RS08805 0.74 +1.0
272,154 - EX31_RS08805 0.74 -0.1
272,251 + EX31_RS08805 0.84 -0.1
272,271 + EX31_RS08805 0.86 +1.4
272,272 - EX31_RS08805 0.86 -0.1
272,285 - EX31_RS08805 0.87 +0.1
272,288 - EX31_RS08805 0.87 -0.1
272,288 - EX31_RS08805 0.87 -0.1
272,288 - EX31_RS08805 0.87 +0.2
272,309 - EX31_RS08805 0.89 +0.4
272,364 + -1.4
272,365 - +0.2
272,365 - -0.9
272,365 - -0.3
272,365 - +0.4
272,397 - +0.2
272,407 + -0.1
272,407 + +0.4
272,407 + +0.3
272,408 - -0.7
272,408 - -0.0
272,408 - -0.1
272,408 - -0.7
272,408 - -1.5
272,408 - +0.1
272,408 - +0.1
272,418 - +0.3
272,429 - -1.1
272,439 + -1.0
272,439 + -0.6
272,439 + -1.0
272,439 + +0.4
272,439 + +1.0
272,440 - +0.7
272,520 + -1.6
272,521 - +0.3
272,521 - -0.3
272,521 - +0.5
272,521 - +0.2
272,526 + -0.2
272,526 + -0.2
272,527 - -0.3
272,537 - -0.0
272,602 - EX31_RS08810 0.14 -0.6
272,653 - EX31_RS08810 0.18 -0.5
272,708 + EX31_RS08810 0.22 -1.2
272,708 + EX31_RS08810 0.22 -1.8
272,709 - EX31_RS08810 0.23 -0.5
272,709 - EX31_RS08810 0.23 -1.0
272,709 - EX31_RS08810 0.23 -0.5
272,709 - EX31_RS08810 0.23 -0.7
272,725 - EX31_RS08810 0.24 -0.6
272,742 + EX31_RS08810 0.25 -0.4
272,743 - EX31_RS08810 0.25 -1.1
272,743 - EX31_RS08810 0.25 -0.5
272,743 - EX31_RS08810 0.25 -1.2
272,745 - EX31_RS08810 0.25 +0.5
272,752 + EX31_RS08810 0.26 -0.3
272,799 + EX31_RS08810 0.29 -0.1
272,800 - EX31_RS08810 0.30 +0.3
272,808 + EX31_RS08810 0.30 -1.4
272,808 + EX31_RS08810 0.30 +0.2
272,809 - EX31_RS08810 0.30 -1.2
272,810 + EX31_RS08810 0.30 +0.0
272,810 + EX31_RS08810 0.30 +1.3
272,810 + EX31_RS08810 0.30 -0.0
272,810 + EX31_RS08810 0.30 -1.4
272,811 - EX31_RS08810 0.30 -0.7
272,817 + EX31_RS08810 0.31 +0.9
272,818 - EX31_RS08810 0.31 -1.1
272,818 - EX31_RS08810 0.31 -0.6
272,818 - EX31_RS08810 0.31 -1.0
272,818 - EX31_RS08810 0.31 -0.5
272,818 - EX31_RS08810 0.31 -0.3
272,831 - EX31_RS08810 0.32 -0.5
272,895 + EX31_RS08810 0.37 -1.2
272,896 - EX31_RS08810 0.37 +0.6
272,994 + EX31_RS08810 0.44 -0.6
272,995 - EX31_RS08810 0.45 -0.9
272,995 - EX31_RS08810 0.45 -1.4
272,998 - EX31_RS08810 0.45 -0.4
273,018 + EX31_RS08810 0.46 -0.8
273,019 - EX31_RS08810 0.46 +0.2
273,032 - EX31_RS08810 0.47 -1.2
273,092 + EX31_RS08810 0.52 -0.3
273,093 - EX31_RS08810 0.52 -0.4
273,093 - EX31_RS08810 0.52 -0.6
273,112 + EX31_RS08810 0.54 -1.5
273,113 - EX31_RS08810 0.54 +0.1
273,113 - EX31_RS08810 0.54 -0.2
273,170 + EX31_RS08810 0.58 -0.8
273,171 - EX31_RS08810 0.58 -0.6
273,171 - EX31_RS08810 0.58 +0.2
273,171 - EX31_RS08810 0.58 -0.6
273,244 + EX31_RS08810 0.64 -0.3
273,244 + EX31_RS08810 0.64 -0.5
273,245 - EX31_RS08810 0.64 -0.0
273,245 - EX31_RS08810 0.64 -0.2
273,268 + EX31_RS08810 0.66 -1.6
273,269 - EX31_RS08810 0.66 -1.0
273,278 - EX31_RS08810 0.66 +0.1
273,284 - EX31_RS08810 0.67 -1.7
273,352 - EX31_RS08810 0.72 -3.1
273,352 - EX31_RS08810 0.72 -0.8
273,388 - EX31_RS08810 0.75 -0.3
273,393 + EX31_RS08810 0.75 -0.4
273,393 + EX31_RS08810 0.75 -1.0
273,394 - EX31_RS08810 0.75 +0.3
273,394 - EX31_RS08810 0.75 -0.1
273,395 + EX31_RS08810 0.75 -0.2
273,396 - EX31_RS08810 0.75 -0.9
273,396 - EX31_RS08810 0.75 -1.1
273,396 - EX31_RS08810 0.75 -0.5
273,396 - EX31_RS08810 0.75 -0.5
273,396 - EX31_RS08810 0.75 -0.1
273,396 - EX31_RS08810 0.75 -0.1
273,396 - EX31_RS08810 0.75 -0.1

Or see this region's nucleotide sequence