Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05545 and EX31_RS05550 overlap by 1 nucleotides EX31_RS05550 and EX31_RS05555 are separated by 19 nucleotides EX31_RS05555 and EX31_RS05560 are separated by 211 nucleotides EX31_RS05560 and EX31_RS05565 overlap by 32 nucleotides EX31_RS05565 and EX31_RS05570 are separated by 81 nucleotides
EX31_RS05545: EX31_RS05545 - ABC transporter ATP-binding protein, at 264,143 to 265,009
_RS05545
EX31_RS05550: EX31_RS05550 - ABC transporter ATP-binding protein, at 265,009 to 265,791
_RS05550
EX31_RS05555: EX31_RS05555 - MmgE/PrpD family protein, at 265,811 to 267,190
_RS05555
EX31_RS05560: EX31_RS05560 - ParD-like family protein, at 267,402 to 267,638
_RS05560
EX31_RS05565: EX31_RS05565 - type II toxin-antitoxin system RelE/ParE family toxin, at 267,607 to 267,936
_RS05565
EX31_RS05570: EX31_RS05570 - type II toxin-antitoxin system PrlF family antitoxin, at 268,018 to 268,362
_RS05570
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.827 kb on + strand, within EX31_RS05545 at 264.827 kb on + strand, within EX31_RS05545 at 264.828 kb on - strand, within EX31_RS05545 at 264.828 kb on - strand, within EX31_RS05545 at 264.838 kb on + strand, within EX31_RS05545 at 264.838 kb on + strand, within EX31_RS05545 at 264.839 kb on - strand, within EX31_RS05545 at 264.839 kb on - strand, within EX31_RS05545 at 264.871 kb on + strand, within EX31_RS05545 at 264.887 kb on + strand, within EX31_RS05545 at 264.887 kb on + strand, within EX31_RS05545 at 264.888 kb on - strand, within EX31_RS05545 at 264.947 kb on - strand at 264.984 kb on + strand at 264.985 kb on - strand at 264.986 kb on + strand at 265.153 kb on + strand, within EX31_RS05550 at 265.276 kb on - strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.282 kb on + strand, within EX31_RS05550 at 265.283 kb on - strand, within EX31_RS05550 at 265.283 kb on - strand, within EX31_RS05550 at 265.295 kb on + strand, within EX31_RS05550 at 265.296 kb on - strand, within EX31_RS05550 at 265.296 kb on - strand, within EX31_RS05550 at 265.318 kb on + strand, within EX31_RS05550 at 265.318 kb on + strand, within EX31_RS05550 at 265.318 kb on + strand, within EX31_RS05550 at 265.319 kb on - strand, within EX31_RS05550 at 265.319 kb on - strand, within EX31_RS05550 at 265.348 kb on + strand, within EX31_RS05550 at 265.529 kb on + strand, within EX31_RS05550 at 265.627 kb on + strand, within EX31_RS05550 at 265.628 kb on - strand, within EX31_RS05550 at 265.756 kb on + strand at 265.757 kb on - strand at 265.757 kb on - strand at 265.919 kb on + strand at 265.919 kb on + strand at 265.919 kb on + strand at 265.919 kb on + strand at 265.920 kb on - strand at 265.920 kb on - strand at 265.973 kb on + strand, within EX31_RS05555 at 265.973 kb on + strand, within EX31_RS05555 at 265.974 kb on - strand, within EX31_RS05555 at 265.974 kb on - strand, within EX31_RS05555 at 265.978 kb on + strand, within EX31_RS05555 at 265.979 kb on - strand, within EX31_RS05555 at 266.072 kb on + strand, within EX31_RS05555 at 266.184 kb on - strand, within EX31_RS05555 at 266.184 kb on - strand, within EX31_RS05555 at 266.240 kb on + strand, within EX31_RS05555 at 266.240 kb on + strand, within EX31_RS05555 at 266.240 kb on + strand, within EX31_RS05555 at 266.241 kb on - strand, within EX31_RS05555 at 266.241 kb on - strand, within EX31_RS05555 at 266.241 kb on - strand, within EX31_RS05555 at 266.241 kb on - strand, within EX31_RS05555 at 266.241 kb on - strand, within EX31_RS05555 at 266.316 kb on + strand, within EX31_RS05555 at 266.316 kb on + strand, within EX31_RS05555 at 266.316 kb on + strand, within EX31_RS05555 at 266.316 kb on + strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.317 kb on - strand, within EX31_RS05555 at 266.329 kb on + strand, within EX31_RS05555 at 266.482 kb on + strand, within EX31_RS05555 at 266.482 kb on + strand, within EX31_RS05555 at 266.482 kb on + strand, within EX31_RS05555 at 266.482 kb on + strand, within EX31_RS05555 at 266.482 kb on + strand, within EX31_RS05555 at 266.483 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.581 kb on - strand, within EX31_RS05555 at 266.704 kb on + strand, within EX31_RS05555 at 266.704 kb on + strand, within EX31_RS05555 at 266.704 kb on + strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.705 kb on - strand, within EX31_RS05555 at 266.786 kb on + strand, within EX31_RS05555 at 266.786 kb on + strand, within EX31_RS05555 at 266.787 kb on - strand, within EX31_RS05555 at 266.887 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.901 kb on - strand, within EX31_RS05555 at 266.902 kb on + strand, within EX31_RS05555 at 266.903 kb on - strand, within EX31_RS05555 at 266.962 kb on + strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.963 kb on - strand, within EX31_RS05555 at 266.985 kb on + strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 266.986 kb on - strand, within EX31_RS05555 at 267.135 kb on + strand at 267.144 kb on + strand at 267.269 kb on + strand at 267.269 kb on + strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.270 kb on - strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.273 kb on + strand at 267.274 kb on - strand at 267.288 kb on - strand at 267.345 kb on + strand at 267.346 kb on - strand at 267.355 kb on + strand at 267.379 kb on + strand at 267.413 kb on + strand at 267.413 kb on + strand at 267.414 kb on - strand at 267.421 kb on + strand at 267.421 kb on + strand at 267.422 kb on - strand at 267.422 kb on - strand at 267.446 kb on - strand, within EX31_RS05560 at 267.446 kb on - strand, within EX31_RS05560 at 267.446 kb on - strand, within EX31_RS05560 at 267.451 kb on + strand, within EX31_RS05560 at 267.451 kb on + strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.452 kb on - strand, within EX31_RS05560 at 267.551 kb on + strand, within EX31_RS05560 at 267.552 kb on - strand, within EX31_RS05560 at 267.552 kb on - strand, within EX31_RS05560 at 267.587 kb on + strand, within EX31_RS05560 at 267.588 kb on - strand, within EX31_RS05560 at 267.588 kb on - strand, within EX31_RS05560 at 267.599 kb on - strand, within EX31_RS05560 at 267.606 kb on + strand, within EX31_RS05560 at 267.606 kb on + strand, within EX31_RS05560 at 267.639 kb on + strand at 267.639 kb on + strand at 267.639 kb on + strand at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.640 kb on - strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.725 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.753 kb on + strand, within EX31_RS05565 at 267.754 kb on - strand, within EX31_RS05565 at 267.754 kb on - strand, within EX31_RS05565 at 267.772 kb on + strand, within EX31_RS05565 at 267.772 kb on + strand, within EX31_RS05565 at 267.773 kb on - strand, within EX31_RS05565 at 267.773 kb on - strand, within EX31_RS05565 at 267.786 kb on + strand, within EX31_RS05565 at 267.823 kb on + strand, within EX31_RS05565 at 267.823 kb on + strand, within EX31_RS05565 at 267.824 kb on - strand, within EX31_RS05565 at 267.824 kb on - strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.853 kb on + strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.854 kb on - strand, within EX31_RS05565 at 267.886 kb on + strand, within EX31_RS05565 at 267.887 kb on - strand, within EX31_RS05565 at 267.897 kb on + strand, within EX31_RS05565 at 267.898 kb on - strand, within EX31_RS05565 at 267.898 kb on - strand, within EX31_RS05565 at 267.934 kb on + strand at 267.972 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.994 kb on + strand at 267.995 kb on - strand at 267.995 kb on - strand at 268.004 kb on + strand at 268.005 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.018 kb on - strand at 268.034 kb on + strand at 268.174 kb on - strand, within EX31_RS05570 at 268.174 kb on - strand, within EX31_RS05570
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 264,827 + EX31_RS05545 0.79 +0.2 264,827 + EX31_RS05545 0.79 +0.0 264,828 - EX31_RS05545 0.79 +0.1 264,828 - EX31_RS05545 0.79 +0.2 264,838 + EX31_RS05545 0.80 -0.9 264,838 + EX31_RS05545 0.80 -0.2 264,839 - EX31_RS05545 0.80 +1.0 264,839 - EX31_RS05545 0.80 +1.2 264,871 + EX31_RS05545 0.84 +0.8 264,887 + EX31_RS05545 0.86 +0.2 264,887 + EX31_RS05545 0.86 +0.2 264,888 - EX31_RS05545 0.86 +0.8 264,947 - +0.1 264,984 + -0.0 264,985 - +0.1 264,986 + +1.0 265,153 + EX31_RS05550 0.18 -0.5 265,276 - EX31_RS05550 0.34 +0.7 265,282 + EX31_RS05550 0.35 +0.8 265,282 + EX31_RS05550 0.35 -0.4 265,282 + EX31_RS05550 0.35 -0.1 265,282 + EX31_RS05550 0.35 -0.3 265,282 + EX31_RS05550 0.35 +0.1 265,282 + EX31_RS05550 0.35 -0.0 265,283 - EX31_RS05550 0.35 -0.1 265,283 - EX31_RS05550 0.35 +0.4 265,295 + EX31_RS05550 0.37 -0.1 265,296 - EX31_RS05550 0.37 +0.0 265,296 - EX31_RS05550 0.37 +0.1 265,318 + EX31_RS05550 0.39 -0.3 265,318 + EX31_RS05550 0.39 +0.3 265,318 + EX31_RS05550 0.39 -0.3 265,319 - EX31_RS05550 0.40 -0.2 265,319 - EX31_RS05550 0.40 +0.1 265,348 + EX31_RS05550 0.43 -0.4 265,529 + EX31_RS05550 0.66 -0.4 265,627 + EX31_RS05550 0.79 +0.2 265,628 - EX31_RS05550 0.79 -0.1 265,756 + -0.7 265,757 - +0.4 265,757 - -0.7 265,919 + -1.2 265,919 + -0.1 265,919 + -0.3 265,919 + +1.0 265,920 - -0.9 265,920 - -0.6 265,973 + EX31_RS05555 0.12 -0.1 265,973 + EX31_RS05555 0.12 +0.4 265,974 - EX31_RS05555 0.12 +0.2 265,974 - EX31_RS05555 0.12 -0.2 265,978 + EX31_RS05555 0.12 -0.9 265,979 - EX31_RS05555 0.12 -0.0 266,072 + EX31_RS05555 0.19 -0.1 266,184 - EX31_RS05555 0.27 -0.1 266,184 - EX31_RS05555 0.27 -0.3 266,240 + EX31_RS05555 0.31 -0.1 266,240 + EX31_RS05555 0.31 +0.7 266,240 + EX31_RS05555 0.31 +0.5 266,241 - EX31_RS05555 0.31 -0.4 266,241 - EX31_RS05555 0.31 +0.1 266,241 - EX31_RS05555 0.31 -0.5 266,241 - EX31_RS05555 0.31 -0.7 266,241 - EX31_RS05555 0.31 +0.1 266,316 + EX31_RS05555 0.37 +0.3 266,316 + EX31_RS05555 0.37 -0.5 266,316 + EX31_RS05555 0.37 +0.1 266,316 + EX31_RS05555 0.37 -0.0 266,317 - EX31_RS05555 0.37 +0.4 266,317 - EX31_RS05555 0.37 -0.0 266,317 - EX31_RS05555 0.37 +0.4 266,317 - EX31_RS05555 0.37 -0.6 266,317 - EX31_RS05555 0.37 +0.6 266,317 - EX31_RS05555 0.37 +0.2 266,329 + EX31_RS05555 0.38 +0.7 266,482 + EX31_RS05555 0.49 -0.0 266,482 + EX31_RS05555 0.49 +0.1 266,482 + EX31_RS05555 0.49 -0.0 266,482 + EX31_RS05555 0.49 -1.2 266,482 + EX31_RS05555 0.49 -0.7 266,483 - EX31_RS05555 0.49 +2.2 266,581 - EX31_RS05555 0.56 +0.2 266,581 - EX31_RS05555 0.56 -0.2 266,581 - EX31_RS05555 0.56 -0.5 266,581 - EX31_RS05555 0.56 -0.5 266,581 - EX31_RS05555 0.56 -0.2 266,581 - EX31_RS05555 0.56 +0.8 266,581 - EX31_RS05555 0.56 -0.5 266,704 + EX31_RS05555 0.65 -0.9 266,704 + EX31_RS05555 0.65 -0.1 266,704 + EX31_RS05555 0.65 +0.0 266,705 - EX31_RS05555 0.65 +0.6 266,705 - EX31_RS05555 0.65 -0.1 266,705 - EX31_RS05555 0.65 +0.7 266,705 - EX31_RS05555 0.65 -0.8 266,786 + EX31_RS05555 0.71 +0.1 266,786 + EX31_RS05555 0.71 -0.9 266,787 - EX31_RS05555 0.71 -0.1 266,887 - EX31_RS05555 0.78 -0.6 266,901 - EX31_RS05555 0.79 +1.2 266,901 - EX31_RS05555 0.79 -0.2 266,901 - EX31_RS05555 0.79 +0.3 266,901 - EX31_RS05555 0.79 +0.0 266,902 + EX31_RS05555 0.79 -0.1 266,903 - EX31_RS05555 0.79 -0.9 266,962 + EX31_RS05555 0.83 -0.2 266,963 - EX31_RS05555 0.83 +1.7 266,963 - EX31_RS05555 0.83 +1.0 266,963 - EX31_RS05555 0.83 -0.2 266,963 - EX31_RS05555 0.83 +0.5 266,985 + EX31_RS05555 0.85 -2.5 266,986 - EX31_RS05555 0.85 +0.0 266,986 - EX31_RS05555 0.85 -0.7 266,986 - EX31_RS05555 0.85 -0.7 267,135 + -0.3 267,144 + +0.1 267,269 + +0.1 267,269 + +0.3 267,270 - -0.3 267,270 - -0.5 267,270 - -0.5 267,270 - +0.2 267,270 - -0.2 267,270 - -0.8 267,273 + +0.5 267,273 + +0.1 267,273 + -0.3 267,273 + -0.2 267,273 + -0.4 267,274 - +0.8 267,288 - +0.1 267,345 + -0.2 267,346 - -0.4 267,355 + +0.1 267,379 + +0.0 267,413 + +0.5 267,413 + +0.2 267,414 - +0.3 267,421 + -0.2 267,421 + +0.2 267,422 - +0.6 267,422 - -1.1 267,446 - EX31_RS05560 0.19 -0.6 267,446 - EX31_RS05560 0.19 -0.3 267,446 - EX31_RS05560 0.19 -1.3 267,451 + EX31_RS05560 0.21 +0.1 267,451 + EX31_RS05560 0.21 +0.3 267,452 - EX31_RS05560 0.21 -0.6 267,452 - EX31_RS05560 0.21 -0.9 267,452 - EX31_RS05560 0.21 -0.3 267,551 + EX31_RS05560 0.63 +0.1 267,552 - EX31_RS05560 0.63 +0.4 267,552 - EX31_RS05560 0.63 -0.3 267,587 + EX31_RS05560 0.78 -1.1 267,588 - EX31_RS05560 0.78 -0.2 267,588 - EX31_RS05560 0.78 +0.1 267,599 - EX31_RS05560 0.83 -1.7 267,606 + EX31_RS05560 0.86 +0.3 267,606 + EX31_RS05560 0.86 -0.5 267,639 + -0.2 267,639 + +0.9 267,639 + -0.8 267,640 - EX31_RS05565 0.10 -1.4 267,640 - EX31_RS05565 0.10 -0.0 267,640 - EX31_RS05565 0.10 +0.3 267,640 - EX31_RS05565 0.10 -1.1 267,640 - EX31_RS05565 0.10 -0.8 267,725 + EX31_RS05565 0.36 -0.4 267,725 + EX31_RS05565 0.36 +0.3 267,725 + EX31_RS05565 0.36 -0.2 267,753 + EX31_RS05565 0.44 +0.2 267,753 + EX31_RS05565 0.44 -0.3 267,753 + EX31_RS05565 0.44 +0.2 267,753 + EX31_RS05565 0.44 +0.4 267,753 + EX31_RS05565 0.44 -0.2 267,754 - EX31_RS05565 0.45 +0.4 267,754 - EX31_RS05565 0.45 +0.4 267,772 + EX31_RS05565 0.50 +0.2 267,772 + EX31_RS05565 0.50 -0.3 267,773 - EX31_RS05565 0.50 -0.6 267,773 - EX31_RS05565 0.50 -1.3 267,786 + EX31_RS05565 0.54 +0.2 267,823 + EX31_RS05565 0.65 -0.2 267,823 + EX31_RS05565 0.65 +0.1 267,824 - EX31_RS05565 0.66 +0.9 267,824 - EX31_RS05565 0.66 -0.7 267,853 + EX31_RS05565 0.75 +0.8 267,853 + EX31_RS05565 0.75 -0.1 267,853 + EX31_RS05565 0.75 -0.3 267,853 + EX31_RS05565 0.75 +0.1 267,853 + EX31_RS05565 0.75 +0.2 267,854 - EX31_RS05565 0.75 -0.9 267,854 - EX31_RS05565 0.75 -1.4 267,854 - EX31_RS05565 0.75 -3.5 267,854 - EX31_RS05565 0.75 -0.6 267,854 - EX31_RS05565 0.75 +0.1 267,886 + EX31_RS05565 0.85 +1.1 267,887 - EX31_RS05565 0.85 +0.0 267,897 + EX31_RS05565 0.88 -0.0 267,898 - EX31_RS05565 0.88 -1.1 267,898 - EX31_RS05565 0.88 -0.2 267,934 + -0.3 267,972 + +0.5 267,994 + -0.3 267,994 + +0.5 267,994 + -0.4 267,994 + +0.3 267,994 + -0.5 267,994 + +1.3 267,994 + +0.6 267,995 - +1.0 267,995 - -0.2 268,004 + +0.4 268,005 - +0.2 268,018 - +1.2 268,018 - +0.0 268,018 - +0.4 268,018 - +0.2 268,018 - -0.6 268,018 - +0.1 268,018 - -0.2 268,018 - +0.5 268,018 - -0.5 268,034 + -0.2 268,174 - EX31_RS05570 0.45 +0.1 268,174 - EX31_RS05570 0.45 -0.1
Or see this region's nucleotide sequence