Strain Fitness in Rahnella sp. WP5 around EX31_RS03630

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03625 and EX31_RS03630 overlap by 4 nucleotidesEX31_RS03630 and EX31_RS03635 overlap by 14 nucleotides EX31_RS03625: EX31_RS03625 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 220,754 to 222,115 _RS03625 EX31_RS03630: EX31_RS03630 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 222,112 to 223,599 _RS03630 EX31_RS03635: EX31_RS03635 - peptidoglycan glycosyltransferase FtsI, at 223,586 to 225,349 _RS03635 Position (kb) 222 223 224Strain fitness (log2 ratio) -1 0 1at 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strandat 223.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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223,626 - +0.5
223,626 - +0.9
223,626 - +0.1
223,626 - +0.3
223,626 - +0.2
223,626 - -0.0
223,626 - -0.3
223,626 - +0.6

Or see this region's nucleotide sequence