Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02610 and EX31_RS02615 are separated by 195 nucleotides EX31_RS02615 and EX31_RS25725 are separated by 319 nucleotides EX31_RS25725 and EX31_RS02625 are separated by 69 nucleotides
EX31_RS02610: EX31_RS02610 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 554,597 to 557,074
_RS02610
EX31_RS02615: EX31_RS02615 - lipase family protein, at 557,270 to 559,369
_RS02615
EX31_RS25725: EX31_RS25725 - hypothetical protein, at 559,689 to 560,123
_RS25725
EX31_RS02625: EX31_RS02625 - hypothetical protein, at 560,193 to 560,933
_RS02625
Position (kb) 557
558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.306 kb on + strand, within EX31_RS02610 at 556.345 kb on + strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.346 kb on - strand, within EX31_RS02610 at 556.399 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.418 kb on + strand, within EX31_RS02610 at 556.529 kb on - strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.550 kb on + strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.551 kb on - strand, within EX31_RS02610 at 556.864 kb on + strand at 556.878 kb on - strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.988 kb on + strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 556.989 kb on - strand at 557.039 kb on + strand at 557.040 kb on - strand at 557.040 kb on - strand at 557.072 kb on + strand at 557.073 kb on - strand at 557.079 kb on + strand at 557.080 kb on - strand at 557.148 kb on - strand at 557.148 kb on - strand at 557.192 kb on + strand at 557.193 kb on - strand at 557.193 kb on - strand at 557.196 kb on - strand at 557.230 kb on - strand at 557.320 kb on + strand at 557.320 kb on + strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.321 kb on - strand at 557.331 kb on - strand at 557.386 kb on + strand at 557.386 kb on + strand at 557.386 kb on + strand at 557.424 kb on - strand at 557.424 kb on - strand at 557.469 kb on - strand at 557.473 kb on + strand at 557.483 kb on + strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.504 kb on - strand, within EX31_RS02615 at 557.577 kb on + strand, within EX31_RS02615 at 557.577 kb on + strand, within EX31_RS02615 at 557.692 kb on + strand, within EX31_RS02615 at 557.712 kb on + strand, within EX31_RS02615 at 557.712 kb on + strand, within EX31_RS02615 at 557.713 kb on - strand, within EX31_RS02615 at 557.713 kb on - strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.740 kb on + strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.741 kb on - strand, within EX31_RS02615 at 557.750 kb on + strand, within EX31_RS02615 at 557.751 kb on - strand, within EX31_RS02615 at 557.863 kb on - strand, within EX31_RS02615 at 557.967 kb on + strand, within EX31_RS02615 at 558.019 kb on + strand, within EX31_RS02615 at 558.020 kb on - strand, within EX31_RS02615 at 558.111 kb on + strand, within EX31_RS02615 at 558.134 kb on + strand, within EX31_RS02615 at 558.153 kb on + strand, within EX31_RS02615 at 558.153 kb on + strand, within EX31_RS02615 at 558.154 kb on - strand, within EX31_RS02615 at 558.158 kb on - strand, within EX31_RS02615 at 558.222 kb on + strand, within EX31_RS02615 at 558.222 kb on + strand, within EX31_RS02615 at 558.222 kb on + strand, within EX31_RS02615 at 558.271 kb on + strand, within EX31_RS02615 at 558.271 kb on + strand, within EX31_RS02615 at 558.321 kb on + strand, within EX31_RS02615 at 558.322 kb on + strand, within EX31_RS02615 at 558.322 kb on + strand, within EX31_RS02615 at 558.322 kb on + strand, within EX31_RS02615 at 558.323 kb on - strand, within EX31_RS02615 at 558.348 kb on - strand, within EX31_RS02615 at 558.376 kb on + strand, within EX31_RS02615 at 558.376 kb on + strand, within EX31_RS02615 at 558.376 kb on + strand, within EX31_RS02615 at 558.377 kb on - strand, within EX31_RS02615 at 558.377 kb on - strand, within EX31_RS02615 at 558.378 kb on + strand, within EX31_RS02615 at 558.390 kb on + strand, within EX31_RS02615 at 558.391 kb on - strand, within EX31_RS02615 at 558.391 kb on - strand, within EX31_RS02615 at 558.391 kb on - strand, within EX31_RS02615 at 558.403 kb on - strand, within EX31_RS02615 at 558.474 kb on - strand, within EX31_RS02615 at 558.492 kb on - strand, within EX31_RS02615 at 558.492 kb on - strand, within EX31_RS02615 at 558.492 kb on - strand, within EX31_RS02615 at 558.492 kb on - strand, within EX31_RS02615 at 558.503 kb on - strand, within EX31_RS02615 at 558.510 kb on - strand, within EX31_RS02615 at 558.593 kb on - strand, within EX31_RS02615 at 558.631 kb on - strand, within EX31_RS02615 at 558.638 kb on - strand, within EX31_RS02615 at 558.638 kb on - strand, within EX31_RS02615 at 558.774 kb on - strand, within EX31_RS02615 at 558.822 kb on + strand, within EX31_RS02615 at 558.855 kb on + strand, within EX31_RS02615 at 558.856 kb on - strand, within EX31_RS02615 at 558.904 kb on + strand, within EX31_RS02615 at 558.904 kb on + strand, within EX31_RS02615 at 558.905 kb on - strand, within EX31_RS02615 at 558.907 kb on + strand, within EX31_RS02615 at 558.907 kb on + strand, within EX31_RS02615 at 558.908 kb on - strand, within EX31_RS02615 at 558.908 kb on - strand, within EX31_RS02615 at 559.039 kb on + strand, within EX31_RS02615 at 559.040 kb on - strand, within EX31_RS02615 at 559.040 kb on - strand, within EX31_RS02615 at 559.084 kb on + strand, within EX31_RS02615 at 559.084 kb on + strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.085 kb on - strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.106 kb on + strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.107 kb on - strand, within EX31_RS02615 at 559.108 kb on + strand, within EX31_RS02615 at 559.108 kb on + strand, within EX31_RS02615 at 559.109 kb on - strand, within EX31_RS02615 at 559.114 kb on + strand, within EX31_RS02615 at 559.115 kb on - strand, within EX31_RS02615 at 559.217 kb on - strand at 559.217 kb on - strand at 559.231 kb on - strand at 559.281 kb on + strand at 559.323 kb on + strand at 559.493 kb on + strand at 559.493 kb on + strand at 559.493 kb on + strand at 559.499 kb on - strand at 559.499 kb on - strand at 559.548 kb on + strand at 559.549 kb on - strand at 559.551 kb on - strand at 559.559 kb on + strand at 559.560 kb on - strand at 559.587 kb on - strand at 559.587 kb on - strand at 559.595 kb on + strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.596 kb on - strand at 559.650 kb on - strand at 559.683 kb on - strand at 559.683 kb on - strand at 559.987 kb on + strand, within EX31_RS25725 at 560.006 kb on - strand, within EX31_RS25725 at 560.009 kb on - strand, within EX31_RS25725 at 560.077 kb on + strand, within EX31_RS25725 at 560.077 kb on + strand, within EX31_RS25725 at 560.345 kb on + strand, within EX31_RS02625 at 560.361 kb on - strand, within EX31_RS02625
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 556,306 + EX31_RS02610 0.69 +0.3 556,345 + EX31_RS02610 0.71 -0.1 556,346 - EX31_RS02610 0.71 +0.4 556,346 - EX31_RS02610 0.71 -0.3 556,346 - EX31_RS02610 0.71 +0.4 556,399 + EX31_RS02610 0.73 +0.6 556,418 + EX31_RS02610 0.73 +0.0 556,418 + EX31_RS02610 0.73 +0.1 556,418 + EX31_RS02610 0.73 -1.1 556,418 + EX31_RS02610 0.73 +0.4 556,529 - EX31_RS02610 0.78 -1.0 556,550 + EX31_RS02610 0.79 -0.1 556,550 + EX31_RS02610 0.79 -1.8 556,550 + EX31_RS02610 0.79 +0.7 556,550 + EX31_RS02610 0.79 -0.6 556,550 + EX31_RS02610 0.79 +0.5 556,550 + EX31_RS02610 0.79 -2.7 556,550 + EX31_RS02610 0.79 +0.1 556,550 + EX31_RS02610 0.79 -0.3 556,550 + EX31_RS02610 0.79 +0.6 556,550 + EX31_RS02610 0.79 -0.0 556,551 - EX31_RS02610 0.79 +0.1 556,551 - EX31_RS02610 0.79 -0.6 556,551 - EX31_RS02610 0.79 -1.3 556,551 - EX31_RS02610 0.79 -0.5 556,551 - EX31_RS02610 0.79 +0.3 556,864 + -0.1 556,878 - -0.0 556,961 + -0.4 556,961 + +0.6 556,961 + -0.1 556,962 - -0.7 556,988 + +0.4 556,988 + +1.1 556,988 + -0.0 556,988 + -2.5 556,988 + +1.1 556,989 - +0.8 556,989 - -1.8 556,989 - +0.1 556,989 - -0.4 556,989 - +0.7 556,989 - +0.1 556,989 - -0.9 556,989 - -0.8 557,039 + +0.1 557,040 - -0.2 557,040 - -0.2 557,072 + +0.1 557,073 - +0.0 557,079 + -0.7 557,080 - -0.8 557,148 - +1.7 557,148 - +0.4 557,192 + +0.5 557,193 - +0.3 557,193 - -0.4 557,196 - -0.1 557,230 - +0.0 557,320 + +0.1 557,320 + +1.2 557,321 - +0.0 557,321 - +1.4 557,321 - -2.0 557,321 - +0.5 557,331 - -0.2 557,386 + -0.4 557,386 + +0.5 557,386 + -1.8 557,424 - -0.4 557,424 - +0.1 557,469 - +0.4 557,473 + -0.8 557,483 + EX31_RS02615 0.10 +0.4 557,504 - EX31_RS02615 0.11 +0.2 557,504 - EX31_RS02615 0.11 +1.3 557,504 - EX31_RS02615 0.11 -0.7 557,577 + EX31_RS02615 0.15 -0.9 557,577 + EX31_RS02615 0.15 +0.1 557,692 + EX31_RS02615 0.20 -0.8 557,712 + EX31_RS02615 0.21 -1.0 557,712 + EX31_RS02615 0.21 -2.1 557,713 - EX31_RS02615 0.21 -0.5 557,713 - EX31_RS02615 0.21 +0.1 557,740 + EX31_RS02615 0.22 +0.0 557,740 + EX31_RS02615 0.22 +0.7 557,740 + EX31_RS02615 0.22 -0.7 557,740 + EX31_RS02615 0.22 -2.0 557,741 - EX31_RS02615 0.22 -0.1 557,741 - EX31_RS02615 0.22 +0.3 557,741 - EX31_RS02615 0.22 +0.7 557,750 + EX31_RS02615 0.23 -0.4 557,751 - EX31_RS02615 0.23 +0.8 557,863 - EX31_RS02615 0.28 -1.0 557,967 + EX31_RS02615 0.33 -0.0 558,019 + EX31_RS02615 0.36 -2.1 558,020 - EX31_RS02615 0.36 -0.5 558,111 + EX31_RS02615 0.40 +0.1 558,134 + EX31_RS02615 0.41 +0.5 558,153 + EX31_RS02615 0.42 +0.3 558,153 + EX31_RS02615 0.42 +0.6 558,154 - EX31_RS02615 0.42 +1.1 558,158 - EX31_RS02615 0.42 -1.0 558,222 + EX31_RS02615 0.45 +0.5 558,222 + EX31_RS02615 0.45 -1.7 558,222 + EX31_RS02615 0.45 +0.6 558,271 + EX31_RS02615 0.48 +0.5 558,271 + EX31_RS02615 0.48 -1.7 558,321 + EX31_RS02615 0.50 +0.2 558,322 + EX31_RS02615 0.50 -0.7 558,322 + EX31_RS02615 0.50 -0.6 558,322 + EX31_RS02615 0.50 +0.3 558,323 - EX31_RS02615 0.50 -0.9 558,348 - EX31_RS02615 0.51 +1.1 558,376 + EX31_RS02615 0.53 -0.2 558,376 + EX31_RS02615 0.53 +0.9 558,376 + EX31_RS02615 0.53 -0.6 558,377 - EX31_RS02615 0.53 -0.6 558,377 - EX31_RS02615 0.53 +0.0 558,378 + EX31_RS02615 0.53 -0.7 558,390 + EX31_RS02615 0.53 -0.2 558,391 - EX31_RS02615 0.53 +0.2 558,391 - EX31_RS02615 0.53 -1.5 558,391 - EX31_RS02615 0.53 +0.2 558,403 - EX31_RS02615 0.54 -0.8 558,474 - EX31_RS02615 0.57 -0.3 558,492 - EX31_RS02615 0.58 -0.2 558,492 - EX31_RS02615 0.58 -0.6 558,492 - EX31_RS02615 0.58 +0.7 558,492 - EX31_RS02615 0.58 +2.1 558,503 - EX31_RS02615 0.59 -1.1 558,510 - EX31_RS02615 0.59 -1.6 558,593 - EX31_RS02615 0.63 +0.1 558,631 - EX31_RS02615 0.65 +0.3 558,638 - EX31_RS02615 0.65 +1.2 558,638 - EX31_RS02615 0.65 -0.2 558,774 - EX31_RS02615 0.72 -1.8 558,822 + EX31_RS02615 0.74 +0.2 558,855 + EX31_RS02615 0.75 -0.6 558,856 - EX31_RS02615 0.76 -0.8 558,904 + EX31_RS02615 0.78 -1.0 558,904 + EX31_RS02615 0.78 +0.2 558,905 - EX31_RS02615 0.78 -1.1 558,907 + EX31_RS02615 0.78 -1.2 558,907 + EX31_RS02615 0.78 -1.0 558,908 - EX31_RS02615 0.78 +0.4 558,908 - EX31_RS02615 0.78 -1.1 559,039 + EX31_RS02615 0.84 -0.5 559,040 - EX31_RS02615 0.84 +0.5 559,040 - EX31_RS02615 0.84 -0.8 559,084 + EX31_RS02615 0.86 -0.2 559,084 + EX31_RS02615 0.86 +0.5 559,085 - EX31_RS02615 0.86 -0.5 559,085 - EX31_RS02615 0.86 +0.2 559,085 - EX31_RS02615 0.86 -0.3 559,106 + EX31_RS02615 0.87 +0.6 559,106 + EX31_RS02615 0.87 +0.9 559,106 + EX31_RS02615 0.87 -0.4 559,106 + EX31_RS02615 0.87 -0.4 559,106 + EX31_RS02615 0.87 -0.1 559,106 + EX31_RS02615 0.87 -0.6 559,106 + EX31_RS02615 0.87 +0.2 559,106 + EX31_RS02615 0.87 -1.8 559,106 + EX31_RS02615 0.87 +0.5 559,106 + EX31_RS02615 0.87 +0.4 559,107 - EX31_RS02615 0.87 -0.2 559,107 - EX31_RS02615 0.87 +0.5 559,107 - EX31_RS02615 0.87 -0.1 559,107 - EX31_RS02615 0.87 -0.1 559,107 - EX31_RS02615 0.87 +0.4 559,107 - EX31_RS02615 0.87 +2.3 559,107 - EX31_RS02615 0.87 -0.0 559,107 - EX31_RS02615 0.87 +1.1 559,107 - EX31_RS02615 0.87 +0.5 559,107 - EX31_RS02615 0.87 -1.3 559,108 + EX31_RS02615 0.88 -0.9 559,108 + EX31_RS02615 0.88 +0.6 559,109 - EX31_RS02615 0.88 +0.1 559,114 + EX31_RS02615 0.88 +0.1 559,115 - EX31_RS02615 0.88 +0.1 559,217 - +0.7 559,217 - -1.8 559,231 - -0.3 559,281 + -1.6 559,323 + -0.1 559,493 + -0.6 559,493 + -0.4 559,493 + +0.5 559,499 - -0.5 559,499 - +1.1 559,548 + +0.6 559,549 - -1.6 559,551 - +0.0 559,559 + -0.4 559,560 - +0.0 559,587 - -0.9 559,587 - -0.3 559,595 + +0.2 559,596 - -1.4 559,596 - -0.8 559,596 - -1.6 559,596 - +0.2 559,650 - +0.4 559,683 - -0.8 559,683 - -0.1 559,987 + EX31_RS25725 0.69 +0.2 560,006 - EX31_RS25725 0.73 +0.5 560,009 - EX31_RS25725 0.74 -0.3 560,077 + EX31_RS25725 0.89 +0.5 560,077 + EX31_RS25725 0.89 -0.3 560,345 + EX31_RS02625 0.21 -0.3 560,361 - EX31_RS02625 0.23 -0.9
Or see this region's nucleotide sequence