Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01690 and EX31_RS01695 are separated by 117 nucleotides EX31_RS01695 and EX31_RS01700 overlap by 10 nucleotides EX31_RS01700 and EX31_RS01705 are separated by 147 nucleotides EX31_RS01705 and EX31_RS01710 overlap by 4 nucleotides EX31_RS01710 and EX31_RS01715 overlap by 4 nucleotides
EX31_RS01690: EX31_RS01690 - KilA-N domain-containing protein, at 372,156 to 372,968
_RS01690
EX31_RS01695: EX31_RS01695 - RusA family crossover junction endodeoxyribonuclease, at 373,086 to 373,451
_RS01695
EX31_RS01700: EX31_RS01700 - chromosome partitioning protein ParB, at 373,442 to 373,795
_RS01700
EX31_RS01705: EX31_RS01705 - site-specific DNA-methyltransferase, at 373,943 to 375,067
_RS01705
EX31_RS01710: EX31_RS01710 - hypothetical protein, at 375,064 to 375,405
_RS01710
EX31_RS01715: EX31_RS01715 - DNA replication protein, at 375,402 to 376,106
_RS01715
Position (kb) 373
374
375
376 Strain fitness (log2 ratio) -2
-1
0
1 at 372.952 kb on - strand at 372.957 kb on + strand at 372.985 kb on + strand at 373.048 kb on + strand at 373.054 kb on + strand at 373.087 kb on + strand at 373.115 kb on + strand at 373.173 kb on + strand, within EX31_RS01695 at 373.333 kb on + strand, within EX31_RS01695 at 373.509 kb on + strand, within EX31_RS01700 at 373.630 kb on + strand, within EX31_RS01700 at 373.645 kb on + strand, within EX31_RS01700 at 373.645 kb on + strand, within EX31_RS01700 at 373.698 kb on + strand, within EX31_RS01700 at 373.761 kb on + strand at 373.778 kb on + strand at 373.778 kb on + strand at 373.862 kb on + strand at 374.104 kb on - strand, within EX31_RS01705 at 374.111 kb on + strand, within EX31_RS01705 at 374.111 kb on + strand, within EX31_RS01705 at 374.127 kb on + strand, within EX31_RS01705 at 374.168 kb on - strand, within EX31_RS01705 at 374.317 kb on - strand, within EX31_RS01705 at 374.419 kb on + strand, within EX31_RS01705 at 374.465 kb on + strand, within EX31_RS01705 at 374.466 kb on - strand, within EX31_RS01705 at 374.552 kb on - strand, within EX31_RS01705 at 374.552 kb on - strand, within EX31_RS01705 at 374.595 kb on - strand, within EX31_RS01705 at 374.623 kb on + strand, within EX31_RS01705 at 374.669 kb on + strand, within EX31_RS01705 at 374.670 kb on - strand, within EX31_RS01705 at 374.788 kb on - strand, within EX31_RS01705 at 374.831 kb on + strand, within EX31_RS01705 at 374.831 kb on + strand, within EX31_RS01705 at 374.831 kb on + strand, within EX31_RS01705 at 374.831 kb on + strand, within EX31_RS01705 at 374.831 kb on + strand, within EX31_RS01705 at 374.832 kb on - strand, within EX31_RS01705 at 374.832 kb on - strand, within EX31_RS01705 at 374.832 kb on - strand, within EX31_RS01705 at 374.832 kb on - strand, within EX31_RS01705 at 374.833 kb on + strand, within EX31_RS01705 at 374.834 kb on - strand, within EX31_RS01705 at 374.853 kb on + strand, within EX31_RS01705 at 374.853 kb on + strand, within EX31_RS01705 at 374.854 kb on - strand, within EX31_RS01705 at 374.857 kb on + strand, within EX31_RS01705 at 374.858 kb on - strand, within EX31_RS01705 at 374.858 kb on - strand, within EX31_RS01705 at 374.858 kb on - strand, within EX31_RS01705 at 374.896 kb on + strand, within EX31_RS01705 at 374.897 kb on - strand, within EX31_RS01705 at 375.061 kb on - strand at 375.061 kb on - strand at 375.089 kb on - strand at 375.089 kb on - strand at 375.206 kb on + strand, within EX31_RS01710 at 375.369 kb on + strand, within EX31_RS01710 at 375.369 kb on + strand, within EX31_RS01710 at 375.370 kb on - strand, within EX31_RS01710 at 375.382 kb on - strand at 375.385 kb on + strand at 375.386 kb on - strand at 375.442 kb on + strand at 375.442 kb on + strand at 375.545 kb on + strand, within EX31_RS01715 at 375.545 kb on + strand, within EX31_RS01715 at 375.590 kb on - strand, within EX31_RS01715 at 375.764 kb on + strand, within EX31_RS01715 at 375.765 kb on - strand, within EX31_RS01715 at 375.765 kb on - strand, within EX31_RS01715 at 375.765 kb on - strand, within EX31_RS01715 at 375.765 kb on - strand, within EX31_RS01715 at 376.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 372,952 - -0.5 372,957 + -0.7 372,985 + +0.0 373,048 + -0.3 373,054 + -1.3 373,087 + +0.4 373,115 + -0.9 373,173 + EX31_RS01695 0.24 -0.1 373,333 + EX31_RS01695 0.67 -0.3 373,509 + EX31_RS01700 0.19 -0.6 373,630 + EX31_RS01700 0.53 -0.6 373,645 + EX31_RS01700 0.57 -0.9 373,645 + EX31_RS01700 0.57 -0.2 373,698 + EX31_RS01700 0.72 +0.9 373,761 + -0.7 373,778 + -2.4 373,778 + -1.0 373,862 + -0.2 374,104 - EX31_RS01705 0.14 +0.0 374,111 + EX31_RS01705 0.15 +0.3 374,111 + EX31_RS01705 0.15 +0.2 374,127 + EX31_RS01705 0.16 +0.7 374,168 - EX31_RS01705 0.20 +1.3 374,317 - EX31_RS01705 0.33 -1.3 374,419 + EX31_RS01705 0.42 +1.5 374,465 + EX31_RS01705 0.46 -0.2 374,466 - EX31_RS01705 0.46 -0.1 374,552 - EX31_RS01705 0.54 +0.5 374,552 - EX31_RS01705 0.54 +0.9 374,595 - EX31_RS01705 0.58 +0.0 374,623 + EX31_RS01705 0.60 -0.9 374,669 + EX31_RS01705 0.65 +0.4 374,670 - EX31_RS01705 0.65 +0.9 374,788 - EX31_RS01705 0.75 +0.2 374,831 + EX31_RS01705 0.79 +0.1 374,831 + EX31_RS01705 0.79 +1.1 374,831 + EX31_RS01705 0.79 -0.6 374,831 + EX31_RS01705 0.79 -0.1 374,831 + EX31_RS01705 0.79 +0.7 374,832 - EX31_RS01705 0.79 +0.7 374,832 - EX31_RS01705 0.79 +1.4 374,832 - EX31_RS01705 0.79 +0.2 374,832 - EX31_RS01705 0.79 -0.1 374,833 + EX31_RS01705 0.79 -0.1 374,834 - EX31_RS01705 0.79 -0.8 374,853 + EX31_RS01705 0.81 +0.5 374,853 + EX31_RS01705 0.81 +0.4 374,854 - EX31_RS01705 0.81 +0.4 374,857 + EX31_RS01705 0.81 +0.6 374,858 - EX31_RS01705 0.81 -0.1 374,858 - EX31_RS01705 0.81 +0.3 374,858 - EX31_RS01705 0.81 +0.1 374,896 + EX31_RS01705 0.85 -0.6 374,897 - EX31_RS01705 0.85 +0.8 375,061 - -0.2 375,061 - -0.9 375,089 - +1.1 375,089 - +0.3 375,206 + EX31_RS01710 0.42 -1.2 375,369 + EX31_RS01710 0.89 +1.2 375,369 + EX31_RS01710 0.89 -0.2 375,370 - EX31_RS01710 0.89 +0.6 375,382 - +0.1 375,385 + +0.8 375,386 - +0.6 375,442 + -0.2 375,442 + -0.6 375,545 + EX31_RS01715 0.20 +0.0 375,545 + EX31_RS01715 0.20 -1.3 375,590 - EX31_RS01715 0.27 -0.7 375,764 + EX31_RS01715 0.51 -2.6 375,765 - EX31_RS01715 0.51 -0.4 375,765 - EX31_RS01715 0.51 +0.3 375,765 - EX31_RS01715 0.51 +0.5 375,765 - EX31_RS01715 0.51 -0.7 376,067 + -1.9
Or see this region's nucleotide sequence